β-Lactam resistance determinants in
Abstract
Antibiotic resistance in non-lactose fermenting pathogens such as Pseudomonas aeruginosa (P. aeruginosa) is increasing, making these clinical pathogens more difficult to treat. Multiple resistance mechanisms exist within P. aeruginosa that affect all classes of antibiotics used in the clinic. New strategies and treatment targets within these MDR pathogens must be exploited. One heretofore untapped target is the family of cell wall enzymes known as lytic transglycosylases (Lts). Lts work in concert with penicillin binding proteins (PBPs) and other cell wall proteins such as amidases and peptidoglycan hydrolases to affect normal cell division, and during stress and programmed cell death. Lts are inhibited by natural products called bulgecins, produced by non-pathogenic Paraburkholderia and Burkholderia spp. New research describing the ability of Lt inhibition to restore susceptibility to β-lactams in MDR P. aeruginosa, as well as the structural biologic basis for the activity of bulgecins will be reviewed. Other targets and applications of bulgecins will also be discussed.
Keywords
- antibiotic resistance
- Pseudomonas aeruginosa
- metallo-β-lactamase
- penicillin binding protein
- lytic transglycosylase
- bulgecin A
1. Introduction
This chapter will review our current state of the art knowledge about bulgecins, natural inhibitors of lytic transgylcosylase cell wall enzymes, and their activity as β-lactam enhancers to inhibit growth of
2. β-Lactam resistance mechanisms in Pseudomonas aeruginosa
Resistance determinant | Antibiotics affected | |
---|---|---|
OprD loss | Carbapenems, some cephalosporins, penicillins | |
Efflux pumps (e.g., MexA-B/OprM) | Meropenem, some cephalosporins, penicillins | |
Chromosomal Amp C of | Anti | |
Acquired ESBLs (TEM, SHV,OXA, GES, VEB, CTX-M, PER) | anti | |
Acquired carbapenemases (KPC, OXA, metallo-β-lactamases like NDM, VIM, IMP, SPM types) | anti |
Table 1.
OprD, outer membrane porin D; Mex-multidrug efflux; TEM, class A β-lactamase of
Currently, in the clinical microbiology laboratory, susceptibilities are reported to particular antibiotics depending on the specific sample submitted, e.g., urine, blood, sterile body fluids (pleural, joint, cerebrospinal fluid). At least initially, genotypic testing to determine the presence of specific antibiotic resistance determinants is not performed, and it is left to the clinical infectious diseases expert to reason out the most likely resistance mechanisms based on susceptibility patterns, and to select the most appropriate antibiotic(s) for treatment.
2.1 Outer membrane porin loss (OprD)
The structure, function and regulation of
In the clinical setting, OprD porin loss is often associated with a resistance phenotype in which one observes resistance to carbapenems including imipenem, but
2.2 Efflux pumps in P. aeruginosa
As with porins,
2.3 Hyperproduction of PDC β-lactamases
As in other organisms, of which
2.4 Acquired β-lactamases in P. aeruginosa
β-lactamases from all four Ambler classes have been described in
2.5 Penicillin binding proteins (PBPs) of P. aeruginosa
PBPs of
2.6 Current therapeutic strategies to treat infections with resistant P. aeruginosa
Given that 15–33% of
3. Lytic transglycosylases of P. aeruginosa
Recently, lytic transglycosylases of
Lts in general catalyze a cleavage reaction that breaks the glycosidic bond between the peptidoglycan building blocks, MurNAc and GlcNAc (Figure 1).

Figure 1.
Lt reaction in cell wall remodeling in
This reaction does not involve a water molecule but rather, an active site Glu or Asp residue functions as a general acid, donating a proton to the oxygen in the β-1,4 glycosidic linkage. Then the deprotonated active site residue acts a general base as a nucleophile to break the glycosidic bond. The result is a 1,6-anhydroMurNAc containing final peptide product. This unique cap on the muramyl peptide is a signal and a way for the cell wall peptidoglycan cleavage products to be trafficked for recycling [26]. The reaction shown in Figure 1 is within the strand or “endolytic”. Some Lts also catalyze an end of strand or “exolytic” cleavage.
Lts are classified according to amino acid motifs and function, into 6 distinct families. Even within a family, there is little sequence homology; however, the proteins in families do appear to share distinct folds (Figure 2). Lts are also divided into membrane (designated M in their nomenclature) and soluble (S) forms. It is hypothesized that these proteins are associated with numerous other cell wall proteins such as PBPs so that even the soluble Lts might be physically associated with the inner membrane of bacteria. Some Lts are also associated with the outer membrane, e.g., RlpA (see below) and likely have distinctive roles [29].

Figure 2.
(A) Slt70 of
Lts serve many cellular functions including cell wall recycling, cellular division, insertion into cell wall of important structures like secretion systems and flagellar apparati. Lt redundancy is similar to that of the PBPs, and studies looking at gene knockouts of these proteins show that in
Recently significant research has been conducted on the Lts of
3.1 Kinetic studies of P. aeruginosa lytic transglycosylases
As previously indicated,
In a tour-de-force of biochemical characterization, including synthesis, purification and characterization of the reaction of soluble forms of all 11
Using the simplest synthetic substrate, NAG-NAM(pentapeptide)-NAG-NAM(pentapeptide), Lee et al. found that only MltB and the SltB1–3 Lts could recognize this substrate. A second substrate, a NAG-NAM(tetrapeptide)-NAG-anhydroNAM(tetrapeptide), incorporated the anhydroNAM that is likely recognized better by the exolytic Lts. For this substrate, MltA as well as MltB and the SltB1–3 Lts were able to react to convert 100% of the substrate to NAG-anhdroNAMtetrapeptide product. The soluble Lts, SltB1–3 of
3.2 Structural studies of the soluble Lts, Slt, SLtB1 and SltB3 of P. aeruginosa
X-ray crystal structures of Slt in its apo form as well as in complex with various synthetic PG substrates and reaction products demonstrated that this Lt has both exolytic and endolytic activity [23]. It is a donut shaped protein like Slt of
SltB1 [22] and SltB3 [24] have also been studied using x-ray crystallography. SLtB1 protein structures suggest that the protein forms a so-called “catenane” homodimeric structure in which the active sites face one another and are thus completely occluded. It is speculated that this soluble dimer may represent a form of activity regulation [22]. SltB3 is an exolytic enzyme with four distinct enzymatic domains within the donut shaped annular protein [24]. SltB3 can recognize PG substrates that are 4–20 sugars in length. These PG chains thread through the annular structure during catalysis.
3.3 Structural studies of the endolytic Lt, MltF
X-ray crystal structures of a solubilized MltF [21] show that this Lt binds a tetrapeptide stem of the substrate in an allosteric domain. Binding causes a large conformational change that leads to enzyme activation. In the kinetic studies, this solubilized membrane had very low activity with any of the 4 synthetic substrates or the
4. Bulgecins as Lt inhibitors
Bulgecins were first described by Imato et al. in the 1980s [30, 31]. These natural analogs of GlcNAC-MurNAC are produced by various bacterial species including

Figure 3.
Bulgecin A, the most active of the bulgecins of
Early research by Takeda Pharmaceuticals Japan led to the natural product isolation and purification of the bulgecins [30, 31]. It was discovered that when Bulgecin A was paired with a third generation cephalosporin, cefmenoxime, which targets PBP 3 of Enterobacteriaceae, large bulges were formed in the bacterial cell wall leading to osmotic lysis of the bacteria [30, 31]. Subsequently, investigators discovered the soluble Lt of
Since the original discovery of the bulgecins and Slt in
A recent publication shows that while
5. Microbiological effects of Bulgecin A
Bulgecin A in combination with cefmenoxime and other β-lactams has been studied against Enterobacteriaceae and reported in the original studies by Takeda Pharamceuticals [30, 31]. Later investigators studied Bulgecin A in combination with ampicillin in mouse models of
Other investigators examined the effect of Bulgecin A as a metallo-β-lactamase inhibitor using L1 MBL of

Figure 4.
L1 MBL (left) of
Our group tested the Bulgecin A extracts from
6. Slt, MltD and MltG are the main targets of Bulgecin A inhibition and potentiation of β-lactams that inhibit PBP2 and 3 in P. aeruginosa
Previously it was demonstrated that bulgecin A potentiated the bulge formation and lysis of
The soluble forms of five of the Lt enzymes were purified and bulgecin A binding constants measured: Slt Kd = 8.5 ± 1.1 μM; MltD Kd = 1.4 ± 0.3 μM; MltG Kd = 24 ± 5 μM, SltB1 Kd = 160 ± 20 μM; RlpA Kd = 1200 ± 280 μM.
Dik et al. [27] also demonstrated via scanning electron microscopy that cell wall failure within the bulge is responsible for cell lysis, in the presence of β-lactams and Bulgecin A. Withdrawal of the β-lactam antibiotic leads to delayed recovery of cell morphology in the presence of Bulgecin A alone, suggesting further, the cooperative nature of the Lt and PBP functions in cell wall maintenance.
7. Future prospects for antibiotic enhancers to treat P. aeruginosa infections
Now that the syntheses of the bulgecins A, B and C have been accomplished and purified Lt enzymes of many bacteria are available with simple commercial high throughput assays such as ENZCHEK lysozyme™ (substrate is a fluorescein labelled sacculus from
8. Conclusions
Antibiotic resistance in
Acknowledgments
The author would like to acknowledge her affiliation and employment with the U.S. Department of Veteran Affairs.
Conflict of interest
The author is an employee of the U.S. Department of Veterans Affairs. The opinions expressed in this review are her own and do not reflect those of her employer.
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