hiPSC studies modeling cardiovascular diseases.
1. Introduction
For past several decades, laboratory animal models have been the prevailing paradigm for studying human diseases. A classic approach is to study the impact of specific genes through the use of gain- or loss-of-function mutant animals. While the animal models have greatly contributed to our understanding of the etiology and mechanisms of disease, they often fall short of fully recapitulating human pathophysiology and translating to clinical applications due to interspecies physiologic differences. In a review of preclinical studies of animal models published in high-impact scientific journals, approximately one-third translated to the level of human randomized trials and only one-tenth were subsequently approved clinically for patient use [1]. This attrition rate would have been even higher if less frequently cited animal research had been included. These unresolved issues with animal models have set the stage for the emergence of human embryonic stem cell (hESC) and human induced pluripotent stem cell (hiPSC) for modeling human diseases.
Laid out in this chapter, we will discuss the development of various stem cell paradigms including mESC, hESC, and hiPSC (Figure 1); examine the utilization of these models via studies of cardiac diseases; assess the current limitations and future challenges; and finally conclude with the prospective outlook and viability of the field holistically in the scope of disease modeling.
2. Human cardiovascular diseases
According to the American Heart Association, cardiovascular diseases (CVD) remains the leading cause of deaths in United States, accounting for 32.8% of all deaths or roughly one of every three deaths [2]. To put into perspective, that is an average of 1 death every 39 seconds. CVD is a generic term that encompasses conditions that affect the circulatory system, including myocardial infarction, angina pectoris, heart failure, stroke, and congenital cardiovascular defects. Both genetic and environmental factors are implicated in the pathogenesis of CVDs. While some risk factors such as lifestyle habits and family history have been identified for CVDs, much more remains to be learned about the pathophysiology, optimal management, and proper prevention. Moreover, genetic predispositions like abnormalities in specific ion channels and sarcomere proteins pose special diagnostic and therapeutic challenges. In fact, for most heritable forms of heart diseases, current treatment options leave much to be desired.
3. Stem cell disease modeling
Despite much progress in the past couple decades in the discovery of the molecular and genetic causes of many heart diseases, a detailed mechanic understanding of failing heart at the cellular level remains rudimentary. The main reason for this situation is the lack of access to live human tissues and unproven human cardiomyocyte cell culture models. Postpartum, cardiomyocytes become terminally differentiated and cease to proliferate, thus making isolation and culture of human myocardial cells extremely challenging. One surrogate for human cardiomyocyte culture is the use of rat neonatal cardiomyocytes, which has been shown to yield 8.4x106 cells per heart [3]. However, with both human and rat neonatal cardiomyocytes, the inability to continuously passage cells and scarcity of resource make them unsustainable candidates for disease modeling.
Furthermore, special considerations must be taken into account for critical differences between animal and human cardiomyocytes, in terms of cell biological, mechanical and electrophysiological properties. The lack of appropriate human heart disease models have hindered development of rational therapies, and the prospects for new therapies to treat heart diseases remain dim despite tremendous advances in various animal models. An alternative human biology based approach for heart disease modeling is to use human stem cells as a renewable source of cells for cardiomyocytes. In the following section, we will discuss the various stem cell platforms (mESC, hESC, & hiPSC) for disease modeling, with specific focus on cardiovascular diseases (Figure 2).
3.1. mESC paradigm
In 1981, the first pluripotent mouse embryonic stem cells (mESCs) were isolated
While the general use of mESCs was promising, inherent problems with using animal models remained in the context of studying disease pathogenesis and pathophysiology. One of the crucial points of divergence is the shear difference in size and complexity between humans and mice both macroscopically and genomically [7]. Consequently, disease susceptibility may vary drastically. For instance, a mouse heart is ten thousand times smaller but beats roughly seven times faster than that of a human. The two organisms also differ in their expression of myosin heavy chain (MHC) isoforms. βMHC is the predominant isoform in fetal mouse hearts, whereas mainly αMHC is expressed in adults; conversely, the vice versa is true for humans [8]. Furthermore, mice are resistant to the development of coronary atherosclerosis even on a high-fat, high-cholesterol diet, because they lack cholesteryl ester transfer protein (CETP), an enzyme responsible for the transfer of cholesterol from high-density lipoprotein to low-density lipoprotein [9].
3.2. hESC paradigm
Building on the initial discovery of mESC technologies, increased research focus has been directed towards developing a human-based stem cell approach in anticipation of creating a more accurate disease model. It would be another seventeen years before human embryonic stem cells (hESCs) derived from the inner cell mass of the human blastocyst (stage 4-5 days post-fertilization) were isolated by Thomson
In a study in 2009, Lu et al. evaluated long-term safety and function of retinal pigment epithelium (RPE) as preclinical models of macular degeneration using hESCs [10]. When hESC-induced RPE were subsequently transplanted into mutant mice, they demonstrated long-term functional rescue, though progressively deteriorating function was noted due to the immunogenic response elicited by the xenografts. The initial data showed promise for future elucidation of macular degenerative disease pathophysiology. However, there were important obstacles to widespread clinical translation. First, transplantation of hESC requires immunosuppression, since the cells are allogeneic. In addition, a well known risk of this technology is the formation of teratomas, tumor-like formations containing tissues belonging to all three germ layers, if some undifferentiated pluripotent cells are transplanted [12]. Finally, perhaps the biggest obstacle to a widespread acceptance of human ESC transplantation is ethical and religious, as derivation of human ESCs typically involves the consumption of a human embryo.
3.3. hiPSC paradigm
Given these obstacles to a widespread use of the human ESCs, a new stem cell technology, human induced pluripotent stem cells (hiPSCs), has rapidly overtaken hESC research. Introduced in 2006 by Takahashi and Yamanaka, hiPSCs have been hailed as “the molecular equivalent of the discovery of antibiotics or vaccines in the last century [13].” The technology revolutionized the stem cell field, and for his achievement, Yamanaka received the 2012 Nobel Prize in Medicine.” In a span of just six years, the field has rapidly expanded the repertoire of reprogrammable terminally differentiated tissue into hiPSC (keratinocytes [14, 15], hepatocytes [16], adipose-derived stem cells [17, 18], neural stem cells [19], astrocytes [20], cord blood [21, 22], amniotic cells [23], peripheral blood [24, 25], mesenchymal stromal cells [26], oral mucosa fibroblasts [27], and T-cells [28]). Most recently, the ability to generate hiPSC from Epstein-Barr virus (EBV)-immortalized B cell lines (lymphoblastoid B-cell lines) provides the opportunity to obtain samples from disease cohort repositories such as the Coriell Institute for Medical Research or the UK Biobank [29, 30].
In parallel, tremendous progress has been made towards the directing differentiation of these hiPSCs into various cell fates (neural progenitors [31], [32] motor neurons [33] [34], dopaminergic neurons [35], retinal cells [36], hepatocytes [37], blood cells [25, 38], adipocytes [39], endothelial cells [37, 38], fibroblasts [40, 41], and cardiomyocytes [42]). In theory, these patient-derived hiPSCs should be capable of differentiating into all of the >210 adult cell lineages. Nonetheless, our current growing repertoire sets the stage for studying various disease mechanisms in the laboratory, with the caveat that monogenic diseases such as long-QT syndrome will be much easier to model than complex diseases like Parkinson’s.
As alluded to above, the somatic cell reprogramming offers several distinct advantages over embryonic stem cells. In the U.S. particularly, funding may be scarce at times due to the government’s political stance regarding stem cell research. Importantly, somatic cells can be obtained from individual patients, enabling the development of truly personalized diagnostics and therapeutics.
4. Modeling cardiovascular diseases
While there is a wide array of cardiovascular diseases, we chose to focus on several with well-defined clinical presentation, strong genetic component, and significant research progress (Long QT syndrome types 1 and 2, Timothy syndrome, LEOPARD syndrome, & dilated cardiomyopathy; see Table 1). As discussed below, the paradigm of using stem cells to model inherited cardiovascular diseases is rapidly being established and validated. Moreover, these advances with the rare inherited conditions may lead to new paradigms to study the much more prevalent acquired heart and vascular diseases at the cellular and molecular levels.
|
|
|
Long QT syndrome Type 1 | ||
Moretti et al. (2010) [48] |
|
marked prolonged action potentials; dominant negative trafficking defect associated with a 70 to 80% reduction in Iks current; altered channel activation and deactivation properties; increased susceptibility to catecholamine-induced tachyarrhythmia attenuated by β-blockage |
Long QT syndrome Type 2 | ||
Lahti et al. (2012) [83] |
|
prolonged action potential; reduced Ikr density; more sensitive to potentially arrhythmogenic drugs; more pronounced inverse correlation between the beating rate and repolarization time |
Itzhaki et al. (2011) [50] |
|
significant reduction of potassium current IKr; marked arrhythmogenecity; evaluated potency of existing & novel pharmacological agents |
Matsa et al. (2011) [84] |
|
prolonged field/action potential duration; Ikr blocker & isoprenaline induced arrhythmias presenting as early after depolarizations; attenuated by β-blockers propranolol & nadolol |
Timothy syndrome | ||
Yazawa et al. (2011) [52] |
|
irregular contraction; excess Ca2+ influx; prolonged action potentials; irregular electrical activity; abnormal calcium transients in ventricular-like cells; roscovitine restored electrical and Ca2+ signaling properties |
LEOPARD syndrome | ||
Carvajal-Vergara et al. (2010) [57] |
|
hypertrophic cardiomyopathy; higher degree of sarcomeric organization; preferential localization of NFATC4 in the nucleus |
Dilated cardiomyopathy | ||
Sun et al. (2012) [67] |
|
altered regulation of Ca2+; decreased contractility; abnormal distribution of sarcomeric α-actinin; β-drenergic agonist induced cellular stress; β-adrenergic blockers or overexpression of Serca2a improved function |
4.1. Long QT syndrome
Long-QT syndrome (LQTS) is a rare congenital channelopathy disease that is characterized by an abnormally prolonged ventricular repolarization phase, inherited primarily in an autosomal dominant manner but sometimes autosomal recessively. It was first described in 1957 in a family with normal parents and two healthy children but also in which three children experienced recurrent syncope and sudden death [43]. Electrocardiography (EKG) studies showed prolonged QT interval due to increased ventricular action potential, hence the name of the disease (Figure 3). The prevalence of LQTS in the U.S. is approximately 1 in 7,000 individuals, causing 2,000 to 3,000 sudden deaths annually in children or adolescents [44]. This abnormality can lead to an increased risk of such reported incidence of sudden death, usually triggered by the resulting ventricular fibrillation or torsade de pointes (polymorphic ventricular tachycardia). Depending on the specific gene mutation, long-QT syndrome can be classified into 12 genetic subtypes [45]. Together, LQT1, LQT2, and LQT3 genotypes account for 97% of the mutations identified to date [46].
Our current understanding of how mutations in ion channels cause disease can only be extrapolated from, at best, mammalian cell lines such as immortalized human embryonic kidney 293 cells or
4.1.1. Long QT syndrome type 1
The most common type LQT1, accounting for roughly 45% of genotyped patients, results from mutations of the alpha subunit of the slow delayed rectifier potassium channel KvLQT1, encoded by gene KCNQ1 on chromosome 11 [48]. In a recent study aimed at recapitulating disease phenotype using patient-derived iPSCs, Moretti et al. initially screened a family affected by LQTS type 1 through genotyping and electrophysiology studies, identifying an autosomal dominant missense mutation R190Q of KCNQ1 [48]. Then, they reprogrammed skin fibroblast from two affected family members into iPSCs and directed cardiac induction to yield spontaneously beating cardiomyocytes. Finally, they characterized these heart cells through whole-cell patch clamp, observing reduced Iks, a slow delayed rectifier potassium current, by 70-80%, altered Iks activation and deactivation properties, and an abnormal response to catecholamine stimulation.
Not only were Moretti et al. able to capture characteristics of LQTS type 1
4.1.2. Long QT syndrome type 2
Similar to LQTS type 1, LQTS type 2 is another mutation arising from the alpha subunit of a potassium channel, but one with different properties: a KCNH2 (also known as hERG)-encoded rapid delayed rectifier potassium channel [50]. A diagnostic finding in patients is the onset of clinical symptoms such as syncope triggered by sudden loud noises [45].
In a study by Itzhaki et al., A614V missense mutation was identified in the KCNH2 gene in a 28 year old patient with clinically diagnosed type 2 LQTS [50]. Dermal fibroblast samples were obtained, reprogrammed to generate patient-specific human iPSCs, and through retroviral transduction, differentiated into embryoid bodies of spontaneously beating cardiomyocytes. Through the use of these iPSC-generated heart cells, they were able to conduct electrophysiology studies and test the effects of pharmacological intervention. Itzhaki et al. found marked prolonged action potential duration and significantly reduced peak amplitudes of IKr activation and tail currents in the cells derived from the LQTS patient compared to those generated from a healthy individual, both hallmark signatures of LQTS. They also reported observing early-after depolarizations in 66% of the iPSC-CMs on both cellular and multicellular levels, a key finding suggestive of arrhythmogenicity that explains sudden death in LQTS patients clinically. With the amount of clinical evidence extracted from these patient-derived cardiomocytes, this novel technology can serve as an excellent
4.2. Timothy syndrome
In contrast to the previously detailed potassium channel defects that lead to LQTS, Timothy syndrome is a form of LQTS caused by a missense mutation in the L-type calcium channel Cav1.2, encoded by the CACNA1C gene. This is the predominant L-type channel in the mammalian heart, which is essential for normal heart development and excitation-contraction coupling [51]. Mutations in this Ca2+ channel cause delayed channel closing and consequently, increased cellular excitability.
Concurrent with Itzhaki et al.’s publication LQTS type 2, Yazawa et al. reported their findings on Timothy syndrome using a patient-derived iPSC-CM disease model [52]. To summarize, using a similar cardiac induction protocol, they successfully reproduced
One of the key findings in their study was the functional difference between Timothy syndrome and LQTS type 1 cardiomyocytes. Unlike the latter where both ventricular- and atrial-like cells had prolonged action potentials, only ventricular Timothy syndrome cardiomyocytes exhibited this phenotype. Additionally, drug-induced triggering of arrhythmias and delayed depolarizations in LQTS type 1 cells were not necessary, because they were observed spontaneously in Timothy syndrome cells. While a direct correlation has yet to be established to the clinical outcomes (i.e. torsades de points and ventricular fibrillation), this study is another proof-of-concept that iPSC-CMs are invaluable for examining detailed pathogenesis of human diseases.
4.3. LEOPARD syndrome
LEOPARD syndrome is an autosomal-dominant developmental disorder with clinical manifestations described by its acronym: lentigines, electrocardiographic abnormalities, ocular hypertelorism, pulmonary valve stenosis, abnormal genitalia, retardation of growth, and deafness [53]. It is caused by a mutation in the PTPN11 gene, which impairs the catalytic region of the encoded SHP2 phosphatase [54]. Currently, drosophila [55] and zebrafish [56] models of LEOPARD syndrome have been described in literature, but the molecular basis of pathogenesis remains to be addressed.
In 2010, Carvajal-Vergara et al. successfully demonstrated the use of iPSC technology to characterize LEOPARD syndrome
4.4. Dilated cardiomyopathy
As previously mentioned, cardiovascular disease is the leading cause of morbidity and mortality worldwide, projected to represent 30% of all deaths in 2015 [59]. In the United States alone, heart disease accounts for roughly one-third of all deaths [60]. Of those, dilated cardiomyopathy (DCM) is one of the leading causes of heart failure and is associated with substantial mortality [61]. It leads to progressive cardiac remodeling, characterized by ventricular dilatation, hypertrophy, and systolic dysfunction [62]. In an estimated 20% to 48% of cases depending on the study, DCM is identified as a familial disorder with strong heritability [63]. Mutations in over 30 genes have been shown to be disease causing or disease associated [64].
One of the more common genetic defects causing DCM is a mutation in the cardiac troponin T gene (TNNT2) [65]. Mouse models have already provided invaluable insight to the disease mechanism. For instance, mice still displayed normal phenotype after knockout of one TNNT2 allele, because they only lead to a mild deficit in transcript but not protein [66]. Furthermore, the severity of DCM depends on the ratio of mutant to wild-type TNNT2 transcript, since mutant protein is associated with cardiomyocyte Ca2+ desensitization [66]. However, given the differences in electrophysiological and developmental properties,
In Sun et al.’s study published in 2012, they characterized iPSC-CMs from a family carrying a point mutation (R173W) in the TNNT2 gene by comparing to healthy individuals in the same cohort [67]. These patient-specific cardiomyocytes from diseased individuals exhibited dysregulated calcium handling, decreased contractility, and abnormal heterogenous distribution of sarcomeric α-actinin. The overexpression of Serca2a, a gene therapy treatment for heart failure currently in clinical trials [68], significantly improved the contractility force generated by iPSC-CMs derived from DCM patients [67]. Much like the use of hiPSC technology for other cardiovascular diseases discussed previously, it appears to be a robust system for describing pathogenesis of disease that has yielded preliminary positive results.
5. Stem cell disease modeling challenges
In the framework of disease modeling, both hESC and hiPSC technologies still have unresolved issues to address. For instance, hESCs display chromosomal instability with long-term
In the near future, the hiPSC model faces several main challenges. One of the concerns is developing a robust and efficient methodology for yielding large quantities of differentiated and functional cells of a designated lineage. Depending on the protocol and cell lines used, efficiencies can range anywhere from <0.0001% to >50%. Specifically in the case of cardiac induction, the hiPSC-induced cardiomyocytes resemble immature fetal cardiomyocytes in their gene expression profile (key marker is β-tubulin) as well as electrophysiologic and structural properties [72]. Resolving this hindrance will also have great impact on facilitating
The practicality of studying disease pathogenesis
Finally, not all diseases can be readily modeled using hiPSCs. For example, patients with Fanconi anemia have a defective DNA repair mechanism, and therefore cannot be reprogrammed without antecedent gene correction [74]. For other conditions, some may exhibit low penetrance or do not follow a simple Mendelian form of inheritance and are affected by a multitude of factors ranging from the environment to epigenetics. The latter in diseased state may become an inevitable confounding factor working with iPSCs, because of its contribution to the low efficiency of reprogramming and its stochastic nature. In a study by Meissner et al., sub-clone lineages transfected with an Oct4-GFP reporter were obtained from early appearing iPSC colonies and displayed temporally different expression patterns of GFP, some never expressing it at all [75]. Because of the sensitivity to epigenetic events, the use of histone deacetylase (HDAC) inhibitors may help promote self-renewal and/or directed differentiation of stem cells [76].
6. Future outlook & research direction
The intent of stem cell technology was to recapitulate, as closely as possible, disease phenotype in the human body for three primary outcomes: disease modeling, drug discovery & development, and regenerative medicine. The first of which will provide the initial platform from which drugs and therapeutic applications can be derived. In some cases, a treatment could be discovered before the underlying disease mechanism is understood, because patient-derived hiPSCs can be differentiated without any genetic modifications
In the context of patient-derived cardiomyocytes, while not a perfect
Building on the gradual advancement from mESC to hESC to the current hiPSC technology, one of the technical goals remains to be removing all extrinsic factors with the goal of mimicking
Furthermore, mESC and hESC-directed differentiation formed embryoid bodies (EBs), which are spheroids with an inner layer of ectoderm and a single outer layer of endoderm. These EBs differentiate to derivatives of all 3 primary germ layers, leaving a very low yield of spontaneously contracting cardiomyocytes. While this was sufficient for initial studies, larger quantities of pure cardiomyocytes are necessary to establish a scalable system for disease modeling and drug development. In 2007, Laflamme et al. reported the use of a monolayer cardiac induction system based on activin A and BMP4 with a 30-fold higher yield of pure cardiomyocytes than through the formation of EBs [80]. Most recently, Lian et al. of the Wisconsin stem cell group identified temporal modulation of canonical Wnt signaling as a key step for robust cardiomyocyte differentiation reporting efficient yields of up to 98% [81]. Further studies are needed to evaluate the optimal cardiac induction protocol. Once a robust, universal, and scalable system for directed differentiation of iPSCs into cardiomyocytes is established, we can provide an inexhaustible supply of patient-derived cells for research and therapeutic purposes.
6.1. Zinc finger nucleases
With some host-specific modifications, currently available technologies such as zinc finger nucleases can be applied as the next step in disease modeling after understanding the pathogenesis, developing a cure. Zinc finger nucleases are enzymes that manipulate specific sites of the host genome, generating transgenic lines via knocking-in and knocking-out of genes. The homologous recombination pathway, naturally occurring at DNA replication forks and repairing double stranded breaks, can be exploited to selectively target a locus for modification while leaving the rest of the genome in tact [82]. Through this method, we have been able to identify new gene function in mouse and other homologous mammalian models. The same concept can be applied to gene therapy for humans. For example, with patient-specific cardiomyocytes, constructs can be created and tested
6.2. High-throughput screening
High-throughput screening is another means of advancing disease therapy, but it hinges on its scalability; in other words, whether or not cells of the disease model can be mass-produced. With current protocols for directed cardiac differentiation, every round of experiments would take at least 2 weeks [81]. If hiPSC-derived cardiomyocytes could be consistently generated in 96-well plates, then these high-throughput screenings that could propel translational research from a cellular and molecular level of disease directly to therapeutic applications.
7. Conclusion
In the new era of personalized medicine, the stem cell platform for disease modeling appears very viable, especially given the rapid advancements in the field over the past several decades. We have thoroughly discussed the advantages and disadvantages of using mESC, hESC, and hiPSC, all of which have the common end goal of best recapitulating disease phenotype
Acknowledgments
CCH was funded by the Veterans Affairs VA Merit Award BX000771, NIH grants 5U01HL100398 and 1R01HL104040. CCS was funded by NIH NRSA 5T35HL090555.References
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