Properties of neurodegenerative diseases.
Proteins and peptides are essential complex macromolecules of organisms and participate in actually every process within cells. Three dimensional structures of proteins play a critical role for biological functions. Therefore, they must be properly folded for performing these functions. Three dimensional structures are determined by composition of amino acid sequence. In addition to hydrophobic forces, covalent and weak interactions direct the formation of native protein conformation .
Proteins can be exposed to internal and external forces such as protein-protein interactions, various stresses, mutations etc. Since these forces alternates protein conformation, the biological activity of the protein decreases. However, newly synthesized proteins may not fold correctly, or properly folded proteins cannot spontaneously fold. In this case, proteins have a strong tendency to aggregate [1-3]. Especially, heat shock proteins (chaperones) play a key role in correcting protein folding and prevention of protein aggregation [1, 4, 5].
Protein aggregates has toxic effects when accumulated over a certain amount in the cell. The accumulation of abnormal proteins leads to progressive loss of structure and/or function of neurons, including the death of neurons. Many diseases associate with protein aggregation such as prion, Alzheimer’s (AD), Parkinson’s (PD), and Huntington’s diseases (HD). Thus, dysmnesia, mental retardation, and also cancer are seen in these diseases. Many of the neurodegenerative disorders likely occur due to environmental and genetic factors. Especially, probability of AD and PD occurrence rise with increasing age. Briefly, neurodegenerative diseases have similar pathogenesis and cellular mechanisms [6-10].
Nowadays, mechanisms of protein aggregations and generation of neurodegenerative diseases with misfolded proteins are not clear at the molecular level. Thus, protein aggregation is a bone to pick for biotechnology and pharmaceutical industries. The aim of this chapter is to bring a perspective to the role of misfolded proteins in neurodegenerative diseases in terms of molecular and cellular basis.
2. Overview of protein aggregation
Formation of neurodegenerative diseases has not been elucidated for many years. To date, a variety of mechanisms have been suggested for explaining protein misfolding and protein aggregation, however we cannot understand the mechanism clearly at the molecular and cellular basis.
Functional proteins must pass a quality control process in terms of folding to perform catalysis, cellular transport, signal transmission and regulation. However, variety of structural and environmental factors influence this process negatively [1-3]. In this section, we will focus on aggregation behavior of proteins and these factors.
2.1. Factors affecting protein aggregation in neurodegenerative diseases
2.1.1. Protein structures
The first critical factor is protein structure. Especially, primary and secondary structures of a protein are two of the most important factors for physical and chemical features.
Encoded information in amino acid sequence of a protein determines the three dimensional structure. Position and number of different characteristic amino acid residues in primary structure may lead to an increase or a decrease in aggregation behavior. Number of hydrophobic amino acids in proteins is proportional to tendency of aggregation .
Secondary structures of proteins involve in protein misfolding as well as stability. Proteins often fold locally into stable structures that include α-helix and β-sheet. Generally, some β-sheet-rich proteins (such as scrapie infected prion protein) associate with pathological states. During protein aggregation, the secondary structure is converted from α-helix to β-sheet. Thus, protein gets strictness and wide surface area [1, 11, 12].
Mutations play determinative role in protein aggregation and they may dramatically alter solubility, stability, and aggregation tendency of proteins .
Thermally stable proteins may change its stability even with a point mutation in its structure. For example, a human lysozyme I56T and D67H mutants greatly decreases the lysozyme stability and as a result the lysozyme aggregates easily upon heating. Further aggregation cause amyloid fibrils and these fibrils are deposited in tissues and are associated with neurodegenerative diseases .
Recently, scientists have been suggested a new protein for understanding of ALS (amyotrophic lateral sclerosis), AD, cystic fibrosis (CF) and frontotemporal lobar degeneration (FTLD) mechanisms. The transactive response DNA binding protein 43 (TDP-43) is expressed by all mammalian tissues, conformational changes in this protein cause aggregation and loss of function. TDP-43 has been shown to bind to DNA and mRNA and participate in regulation of transcription and translation. TDP-43 has a glycine rich C-terminal tail and mutation occurs from this region. Consequently, TDP-43 is converted to aggregated form which is accumulated in tissues .
2.1.3. Post-translational modifications
After a protein is synthesized, the posttranslational modifications (PTM) of amino acids may increase the diversity of proteins by additional functional groups (acetate, phosphate, various proteins etc.) and structural changes . In particular, phosphorylation plays a significant role in neurodegenerative diseases. It is also known that, occurrence of AD is associated with tauopathy due to aggregation of the tau protein. In brain, tau protein is found in neurons and it can be phosphorylated with kinase enzymes. Thus, aberrant tau aggregates are formed and they can be accumulated in neurons, thereby their toxic effects are caused neuronal loss and synaptic alteration [16, 17].
Glycosylation is an important PTM for protein stability and aggregation potential. Human prion protein has two potential
Hyperphosphorylation and hyperglycosylation are seemed to be required for protein aggregation and misfolding in neurodegenerative diseases. Moreover, the other PTMs such as glycation, nitration, truncation, polyamination etc. involve in protein misfolding diseases .
2.1.4. Oxidative stress
Oxidative stress leads to protein oxidation which is a biomarker for many neurodegenerative diseases. In particular, free radicals and ROS (reactive oxygen species) cause protein oxidation. A variety of oxidants can be occurred in normal aerobic metabolism . Also, lack of antioxidants, excess of oxygen and lipid and metal ions can generate free radicals.
The oxidation of proteins extremely depends on their amino acid compositions. Generally; lysine, histidine, arginine, methionine, cysteine, phenylalanine, tryptophan, threonine, glutamic acid, and proline residues incline oxidation. Some proteins have metal binding regions on its own structure. Metal ions such as copper, zinc, and iron, are capable of redox reactions and electrons are transferred from ions to oxidizing compounds. Therefore, toxic free radicals are formed and proteins can be converted into aggregation forms or proteins can be aggregated by conformational changes [20, 22].
2.1.5. Protein concentration
Protein concentration is an important parameter in protein aggregation. High protein concentration can increase the likelihood of aggregation. Protein-protein interactions and intermolecular interactions (especially interactions among hydrophobic amino acids) may generate abnormal protein structures. Some misfolded protein aggregates can be constituted neurodegenerative diseases above a certain concentration. Moreover, proteins are refolded at low concentrations spontaneously. For example, lysozyme and immunoglobulin G refold itself at low protein concentration however, refolding yield decreases with increasing protein concentration. Therefore, the optimum spontaneous protein concentration range is accepted as 10-50 µg/ml. [2, 23].
Environmental pH is to be critical for protein aggregation due to changes in net charge on protein. Protonation state of ionizable sites of protein and positive net charge are increased in acidic conditions. Especially, organization of salt bridges is changed in parallel with composed new secondary structures [2,20]. In prion diseases, acidic pH facilitates generation of PrPSc. At low pH, PrPc gains β-sheet structures and shows aggregation tendency . According to the Finl (2006), α-Syn incubated at different temperature and pH values, and the best formation conditions were determined as pH 7.4 and 37˚C . α-Syn can be lost its native structures and PD is accelerated in these conditions.
3. Neurodegenerative diseases
In the world, millions of elder people suffer from neurodegenerative diseases and diagnosis and treatment of these diseases costs millions of dollars per year. Unfortunately, the mechanisms of these diseases are still unclear and we don’t have effective treatment methods. Neurodegenerative diseases are identified as protein misfolding diseases, proteopathies and protein conformational disorders. All diseases (prion, AD, PD, and HD) show typical symptoms: loss and deterioration of neurons and synaptic alterations.
Protein misfolding leads to protein aggregation and accumulation of these aggregates is implicated as the main reason of neurodegenerative diseases. In brain, some native proteins (prion, tau, β-amyloid, α-synuclein, and huntington) undergo conformational changes via genetic and environmental factors. Therefore, secondary structures of protein convert from α-helix/random coil to β-sheet (Table 1.). Consequently, neurotoxic misfolded protein aggregates are deposited in central nervous systems and brain damage and neurodegenerative diseases are formed. In this section, we will analyse the most important four neurodegenerative diseases; prion diseases, AD, PD, and HD, on the basis of protein aggregation and its molecular and cellular mechanisms [6, 8-10].
|Prion Diseases||Prion||Protein aggregation||β-sheet||Spongiosis|
|Alzheimer’s Diseases||Tau β-amyloid||Protein aggregation||β-sheet||Neurofibrillary Tangles Senile Plaques|
|Parkinson’s Diseases||α-Synuclein||Protein aggregation||β-sheet||Lewy Bodies|
|Huntington’s Diseases||Huntington||Protein aggregation||β-sheet||Huntington Inclusion|
3.1. Prion diseases
The group of prion diseases, including Creutzfeldt-Jakob (CJD), fatal familial insomnia (FFI), Kuru, Gerstmann-Sträussler-Scheinker syndrome (GSS) are seen in humans, and in similar fashion scrapie, bovine spongiform encephalopathy (mad cow disease), chronic wasting diseases (CWD), transmissible mink encephalopathy (TME), feline spongiform encephalopathy (FSE) diseases are observed in animals. All of these diseases give similar neurological symptoms such as dysmnesia, depression, sense disturbances, and psychosis .
3.1.1. Structure of PrPc and PrPSc
In 1982, prion term coined by Stanley Prusiner and co-workers from “proteinaceous infectious particle”. Prion protein is found in two different forms: a cellular form of prion protein (PrPc) and scrapie isoform of prion protein (PrPSc). Properly folded form is denoted as PrPc while misfolded form is denoted as PrPSc .
The PrPc is an α-helix-rich glycoprotein that is approximately 250 amino acids in length. It is encoded by the
PrPc is highly conserved protein among mammals during evolution (Fig.1.). When we examine the primary structure of the protein, PrPc consist of a signal peptide (1-22), five octapeptide repeats (PHGGGWGQ) (51-91), a highly conserved hydrophobic domain (106-126), and a GPI (glyco-sylphosphatidylinositol) anchor. Furthermore, PrPc contains two N-linked glycosylation sites (181Asn-Ile-Thr and 197Asn-Phe-Thr). Thus, they get dynamic and flexible properties and the glycan covers prevent intermolecular and intramolecular interactions. His96 and His111 are found in metal binding domains of PrPc and they compose coordination sites with metal ions (Cu+2, Zn+2, Mn+2, Ni+2). A disulfide bond between Cys179 and Cys214 play a significant role for proper folding of PrPc [9, 18-20, 24, 27].
PrPSc can be defined as an infectious isoform of PrPc and causes fatal prion diseases. PrPSc is formed by misfolding of PrPc with a lost in α-helical content. PrPSc has same amino acid sequence with PrPc, but their secondary, tertiary, and quarternary structures are different. Approximately, PrPc includes 3% β-structure and 47% α-helix structure, but nonetheless PrPSc is composed of 43% β-structure and 30% α-helix structure [24, 29]. It becomes non-soluble and resists to proteolytic degradation with conformational changes, whereas PrPc is soluble and protease sensitive. This insoluble protein accumulates in brain and causes a variety of prion diseases in human and animals.
3.1.2. Molecular pathology of Prion diseases
Previous studies suggested a variety of mechanisms for explaining prion pathology. Oxidative stress and lipid peroxidation are the major factors in prion diseases [20, 30]. In central nervous systems, a variety of oxidative stresses including high level of oxygen and lipid, metal ions, and inadequate antioxidants produce free radicals. In PrPSc infected mice, superoxide anion (O2-) is extremely increased in brain. Therefore, high levels of heme oxygenase-1 and malondialdehyde are observed as oxidative stress markers in brain. Cytochrome c oxidase is a large transmembrane protein in mitochondria and it shows antioxidant activity in mitochondria [12, 31]. The level of lipid peroxidation is increased while Cytochrome c oxidase activities are reduced in scrapie infected animal models. Phospholipase D catalyzes the hydrolysis of phosphatidylcholine to generate choline and phosphatidic acid, and its expression level is induced by H2O2 . According to the studies, activity of phospholipase D is increased in the brains of scrapie infected animals. As a result, PrPc transforms into PrPSc because of the formation of these free radicals.
As we discussed the effect of metal ions on protein misfolding in section 2.1.4, the metal ions also play key roles in prion formation. Cu2+ions play a critical role in prion diseases. PrPc has five conserved octapeptide repeats (PHGGGWGQ) which have an affinity for Cu2+ ions. In contrast, affinity of other metal ions (Mg2+, Mn2+, Ni2+ etc.) is weak or nonexistent. The binding of Cu2+ provides formation of protease resistant form: PrPSc. It is also suggested that, PrPc protects cells from harmful redox activities. Especially, in copper-rich environment, PrPc acts as a “copper buffer” that means it inhibits toxic effects of Cu2+ ions for central nervous system and helps maintaining neurons in high level of cupper ions. Thus, redox damage of PrPc has been involved in prion diseases. In brief, copper can convert the cellular prion protein into a protease-resistant species with conformational changes [31-35].
Glycosylation is a stability-enhancing post translational modification in proteins. PrPc contains two potential glycosylation sites which are Asn181 and Asn197 in human PrPc . Generally, binding of carbohydrates can protect protein surface from proteases and undesired protein-protein interactions. Moreover, N-glycosylated prion protein is anchored to the lipid membranes via GPI [18, 19].
Interaction of PrPc with membrane lipid layers play a significant role in conversion of PrPc to PrPSc. PrPc is localized in cholesterol and sphingomyelin rich area on cell surface (known as lipid raft). PrPc is bound to lipid membranes through its GPI anchor. While leaving PrPc from the membranes by catalysis of phosphatidylinositol phospholipase C (PIPLC), PrPSc show resistance to PIPLC. When binding of PrPc to the lipid membranes, PrPc is degraded or converted into PrPSc form [37-40].
3.2. Alzheimer’s diseases
Alzheimer’s disease (AD) is the most frequent type of neurodegenerative disorder in the world. AD is composed of accumulation of aberrant folded tau protein and beta-amyloid protein (Aβ protein) in brain. In 1906, AD was first described by psychiatrist and pathologist Dr. Alois Alzheimer and then the disease was named with his surname [8-10].
To date, there are no effective treatment methods for AD, but some nuclear medicine applications (MRI and PET) are applied in diagnosis of AD. Dramatically, symptoms of AD rise with increasing age and the first sign is memory lapse. Cellular and molecular mechanisms of AD are not well understood yet. Researchers have been reported that AD is associated with genetic and environmental factors and life-style.
3.2.1. Structure of Tau gene and proteins
A microtubule associated protein, Tau, is a biggest component of AD. In 1975, tau proteins were first discovered by Marc Kirschner in Princeton University. Tau was derived from “
Tau protein has four main regions in its primary structures. Acidic region is located in the N-terminal part and it is encoded by exon 2 and exon 3. Prolin-rich region located in the middle of the protein, is encoded by exon 7 and exon 9 and contains several PXXP motifs which can interact with tyrosine kinase. Prolin-rich region works together with acidic region, therefore these two regions are called projection domain which interacts with neural plasma membrane and cytoskeletal elements [16, 17, 41-43].
Tau protein has three to four highly conserved repeats in the C-terminal part for binding to microtubules. Therefore, these repetitive regions are called microtubule binding domains (MBDs) which is encoded by exons 9-12. 275VQJINK280 and 306VQJVYK311are conserved hexapeptides which are located at the beginning of the second and third MBDs. These peptides involve in the generation of β-sheet structure during tauopathy .
3.2.2. Aggregation of Tau protein
Microtubules are major proteins of the cytoskeleton. They have hollow and cylindrical structure and participate in intracellular transport, protection cell structure, and continuity of cell viability. The main function of the tau protein is to stabilize microtubules with binding to microtubules and to other proteins [16, 41]. To perform these functions, tau proteins must be phosphorylated at normal level. However, if tau protein hyperphosphorylate, its biological activity can be lost. Moreover, hyperphosphorylation causes conformational changes and aggregation of tau proteins. Other post-translational modifications such as glycosylation, glycation, polyamination, and nitration may play essential roles in AD .
The longest isoform of tau protein (441 amino acids) has seventy nine Ser or Thr phosphorylation sites which are mainly found on prolin-rich regions. Also, Ser262, Ser293, Ser324, and Ser356 are located in KXGS motif of R1, R2, R3, and R4 domains. Many of kinases and phosphatases (glycogen synthase kinase-3β (GSK3β), mitogen activated protein kinase (MAPK), tau tubulin kinase 1-2 (TTBK1/2), cyclin dependent kinase 5 (CDK5), microtubule affinity regulating kinase (MARK), and stress activated protein kinase (SAP) are affected in tau phosphorylation [17, 45, 46].
Frontotemporal dementia with parkinsonism-17 (FTDP-17) is a progressive neurodegenerative disease which is caused by mutations in the tau gene. The tau gene is mutated in familial FTDP-17 and this mutation accelerates formation of neurofibrillary tangles (NFTs) in the brain. Furthermore, hyperphosphorylation is promoted by this mutation [47,49].
Excess of NFTs and senile plaques (SPs) are important markers in AD. NFTs are aggregates of hyperphosphorylated tau protein that are most commonly known as a primary marker of AD . NFTs are originated from abnormally hyperphosphorylated tau protein. Normally, tau is a microtubule binding protein that stabilizes and assembles microtubules. However, in AD, tau protein undergoes biochemical changes because it twists into pairs of helical filaments and they twist into tangles. Also, tau is generally located in axons, but in tauopathy, it is located in dendrites. Thus, neuron’s transport system may be disintegrated and microtubule cannot function correctly [16, 50].
3.2.3. Structure of Aβ protein and gene
Aβ is a relatively small peptide of 4 to 4.4 kDa that is the major component of amyloid deposits. Intracellular Aβ protein is widely found in neurons and it is associated with inflammatory and antioxidant activity, regulation of cholesterol transport, and activation of kinase enzyme. However, Aβ is one of the best known components in formation of neurodegenerative diseases including AD.
Aβ is approximately composed of 36-43 amino acids and it originates from amyloid precursor protein (APP). In human,
APP can be cleaved into fragments by α, β, and γ secretases and Aβ protein is formed by the action of the β and γ secretases. Aβ protein contains two important regions which play a major role in the formation insoluble amyloid fibrils. C-terminal regions (residues 32 to 42) and internal hydrophobic regions (residues 16 to 23) may enhance increasing β-sheet conformation and Aβ protein misfolding .
3.2.4. Aggregation mechanisms of Aβ protein
In normal brain, Aβ proteins contain mixture of β-sheet and random coil structures. However, a number of β-sheet structures are increased at high protein concentration. Aβ protein constitutes SPs which are important markers in AD. The formation of SPs is a problem of protein folding because of misfolded and aggregated form of Aβ accumulates and shows toxicity in brain .
Genetically, three genes:
3.3. Parkinson’s diseases
Parkinson’s disease (PD) is neurodegenerative movement disorder of the central nervous systems. In 1817, Dr. James Parkinson published “
3.3.1. Structure of α-synuclein
Natively unfolded α-syncline (α-Syn) is a 14 kDa and highly conserved protein that localize different regions of the brain. The name of protein was preferred as “α-synuclein” because of it shows
Natively, α-Syn is an unfolded protein, but obtains its conformation with biological interactions. In cytoplasm, α-Syn is a soluble and in an unfolded state, but it can be found in α-helical conformation for binding to lipid membranes. Also, α-Syn can be in the form of β-sheet for composing Lewy bodies as explained below [56-58].
α-Syn is encoded with
Central hydrophobic region contains non-amyloid beta component (NAC) sequences from residue 61 to 95. This region is highly hydrophobic, and it can promote formation of β-sheet structure. The less conserved C-terminal region consists of a large number of acidic amino acids and several prolines [56-60].
3.3.2. Structures of Lewy bodies
At present, biological role and pathogenic processes of Lewy bodies are still unclear. As far as we know, Lewy bodies are aberrant protein aggregates and their deposits cause PD. Lewy bodies are localized not only in PD brains, but also in other neurodegenerative disorders such as AD brains. According to the electron microscopy images, Lewy bodies are 8-30 µm which are consisted of approximately 10 nm amyloidogenic fibrils such as fibrillary α-Syn and neurofilaments. Lewy bodies contain a variety of proteins including α-Syn, neurofilaments, ubiquitinated proteins, and heat shock proteins (Hsp70 and Hsp90). Oxidative stress, mitochondrial dysfunction, inflammation, ubiquitin proteasome system, pH, protein concentration, and high temperature may be affected negatively by Lewy bodies. Therefore, these factors induce misfolding and aggregation of proteins in the Lewy bodies [57, 61].
3.3.3. Mechanisms of α-Syn misfolding and aggregation
α-Syn plays crucial role in PD because α-Syn is a major fibrillary component for Lewy bodies. There are many adjuvant and disincentive factors available in α-Synfibrillogenesis. Two mutations, A53T and A30P, in the α-Syn gene and overexpression of wild type α-Syn are increased misfolding processes and aggregation. Also, accumulation of abnormal form of α-Syn can inhibit proteasomal functions [9, 61, 62].
It is known that, α-Syn is natively unfolded as well as predominantly non-phosphorylated
As known, oxidative stress is one of the major factors in many diseases as well as the formation of PD [9, 20]. As a result of oxidation, formed free radicals react rapidly with proteins thus, misfolding and aggregation are generated inside the cells. Among twenty amino acids, methionine and cysteine are capable of being easily oxidized. α-Syn doesn’t have cysteine residues, but high content of methionine residues oxidize to methionine sulfoxide. Thus, due to methionine content of α-Syn, the protein is readily aggregates at oxidation conditions. On the other hand, α-Syn phosphorylation can be increased with oxidative stresses as well .
3.4. Huntington’s diseases
Huntington’s disease (HD) is a genetic neurodegenerative disorder and the disease is caused by autosomal dominant inheritance. In 1872, HD was first described as a genetic disease by Dr. George Huntington. Involuntary muscle contractions, movement, and mental disorders are progressed in HD. The disease is inherited as an autosomal dominant and effects brain and nervous systems. Huntington protein undergoes conformational changes with mutation and it shows aggregation tendency .
3.4.1. Structure of Huntington protein and genes
Huntington (Htt) is a large size protein of 350 kDa that is generally composed of 3144 amino acids. Normal protein is highly expressed in peripheral tissues and brain, and it is involved in endocytosis, cytosketal functions, vesicle trafficking, cellular signal transduction, and membrane recycling. In brains, Htt protein leads to cell damage and toxicity through deposition of misfolded aggregate form of Htt protein [8, 9].
The gene for HD is located on the tip of chromosome 4, and is called the
Htt proteins interact with a variety of peptides including huntington associated protein 1 (HAP1), huntington interacting protein 1 and 2 (HIP1 and HIP2) and huntington yeast partners A, B, and C (HYPA, HYPB, and HYPC). These peptides are functioned in cell signaling, transport, and transcription processes [67, 69].
3.4.2. Mechanisms of Huntington misfolding and aggregation
In HD, the neuropathology is characterized with accumulation of Htt protein aggregates. HD is caused by a number of CAG repeats in the gene. To date, many theories have been suggested in HD, but functions of CAG repeats and mechanisms of HD cannot be understood yet. However, common opinion is long CAG repeats (polyQ) are the most important promoter for toxicity of Htt protein aggregates. The polyQ region starts at residue 18 and the number of glutamine residues are the most important marker in HD. Surprisingly, 40 or more CAG repeats are always generated neuropathy, while 35 or fewer CAG repeats are never generated neuropathy. However, in childhood, CAG repeats from 27 to 35 can develop neuropathy [66, 70-72].
In 1994, Max Perutz put forward a “
4. Prevention of neurodegenerative diseases and molecular chaperones
Until this section, neurodegenerative diseases have been discussed on the basis of protein aggregation and misfolding. In healthy organisms, a variety of mechanisms work efficiently for prevention of preteopathies. Molecular chaperones are known to be critical for protein folding processes and neurodegenerative diseases. Heat shock proteins (Hsps) are well-known molecular chaperons in living organisms [1, 76-78].
4.1. The Hsp chaperons
Hsps are highly conserved proteins among living organisms. Hsps are an important class of molecular chaperons and they are located in different parts of the cells such as endoplasmic reticulum, cytosol, and mitochondria. Mainly, Hsps are related with formation of proper protein conformation, and also prevention protein aggregation, misfolding, and oligomerization. Proteins can be exposed a number of cellular and environmental factors including high temperature, inflammation, growth factors, oxidative stress etc. which can cause misfolding and protein aggregation. Overexpression of Hsps has been observed under these stress conditions. Several studies have focused on the neuroprotective role of Hsps. Therefore, the expression levels of Hsps are decreased and misfolded protein accumulation can be occurred in brain [1, 76-78].
Generally, Hsps are divided into six groups on the basis of molecular mass. In this section; Hsp40, Hsp60, Hsp70, Hsp90, Hsp100, and small Hsp (sHsp) have been examined and characterized for association with neurodegenerative diseases and protein folding processes .
Hsp70 is a highly conserved protein in all living organisms. It makes complex with unfolded or partially denatured proteins. Hsp70 has two functional domains: ATPase domain and substrate binding domain (SBD). The operation of these domains is controlled with hydrolysis of ATP. ATPase domain binds to ATP and hydrolyzes it to ADP. This energy drives the protein folding function of the Hsp70. Similarly, Hsp70 binding to misfolded peptides, increases the ATP hydrolysis. Also, Hsp70 interacts with Hsp40 and Hsp90 to perform protein folding process. Hsp70 serves a neuroprotective role in all of neurodegenerative diseases [79-81]. Auluck and co-workers indicated that, expression of Hsp70 reduced α-Syn aggregation, accumulation, and toxicity in PD animal models . In HD models, Hsp70 shows protective assignment in polyglutamine-induced toxicity . Also, Hsp70 is involved in the folding and functional maintenance of tau protein. In prion diseases, Hsp70 binds aggregate form of prion proteins and it mediates their degradation by the proteasome .
Hsp40 is expressed in variety of organisms in different isoforms. It associates with unfolded polypeptides and prevents protein aggregation. Hsp40 can be found in a cell in three different types. All types of Hsp40 contain highly conserved J domain which interacts with Hsp70 ATPase domain. Thus, ATPase activity of Hsp70 is regulated by this interaction. Hsp40 transmits substrate towards Hsp70 SBD domain with an appropriate conformation. Thus, Hsp70 help substrate peptide in its hydrophobic SBD region and assists the peptide to come to a state of proper three-dimensional structure [1, 84]. Hsp40 is extensively found in neurodegenerated brains due to it is association with Hsp70 as a co-chaperon .
Hsp100 participates in counteraction of protein aggregation with Hsp70 and Hsp40. This hexameric 100 kDa protein has substrate and ATP binding regions. Large protein aggregates are broken by Hsp100 and formed small aggregates are carried forward by Hsp70-Hsp40 complex. In yeast, overexpression of Hsp100 leads to disassemble of large prion aggregates and generate the small prion seeds for new rounds of prion propagation [1, 83].
Hsp90 is a highly expressed cellular molecular chaperon and also stabilizes certain proteins and aids protein degradation. Hsp90 is a dimeric protein which has a highly conserved N-terminal domain and a C-terminal domain. Hsp90 is one of the main cytosolic molecular chaperons which is activated with Hsp40 and Hsp70 [1, 85]. Uryu and co-workers demonstrated that expression of Hsp90 is increased in transgenic mouse model of PD. Inhibition of Hsp90 lead to generation of tauopathies because of protein hyperphosphorylation and abnormal neuronal activity can be increased in AD .
Hsp60 is a heptameric 60 kDa protein which is located particularly in mitochondria. Hsp60 works with Hsp70 coordinately for protein folding. Furthermore, it plays key roles in mitochondrial protein transport, replication and transmission of mitochondrial DNA, and apoptosis. For actin and tubulin, Hsp60 is a specific chaperon which is decreased in AD. In AD effected neurons, aggregated and misfolded tau protein is increased in contrast with expression of Hsp60 is decreased [1, 83].
sHsp has a molecular mass between 12 and 30 kDa . As a molecular chaperone, sHsp are located at different compartments in the cell and they can protect protein structures and activities. Also, overexpression of sHsp have reported in many studies [87-90]. In HD, the expression level of Hsp27 is increased and it prevents polyglutamine induced toxicity in neurons. Furthermore, Hsp27 reduces α-syn-induced toxicity in PD patient brain [82, 88]. The other sHsps including Hsp10, Hsp12, Hsp20, Hsp26 are associated with protein folding diseases .
More than 600 diseases such as Alzheimer's disease, Huntington's disease, prion diseases, Parkinson's disease, multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS) and others are characterized by progressive nervous system dysfunction. In the world, millions of people are affected from these diseases. For example, five million people suffer from Alzheimer's disease, one million people from Parkinson’s disease and 30.000 people from Huntington’s diseases in USA. US government spends approximately 50-100 billions of dollars for diagnosis and therapies . Today, we are using effective methods (PET, MRI, SPECT etc.) for diagnosis of neurodegenerative diseases, but we cannot treat the diseases easily as we diagnose them.
All of neurodegenerative diseases are related with protein misfolding and aggregation. Different native proteins lead to formation of diseases, but practically same factors involve in these diseases. Structurally, β-sheet conformation plays a key role in neuropathies. Furthermore, oxidative stress, pH, mutations, post translational modifications etc. lead to protein folding diseases.
New innovations in biochemical and medicinal fields lead to development of a number of mechanisms for protein aggregation and neurodegenerative diseases. Moreover, a variety of analytical techniques such as IR (infrared spectroscopy), NMR (nuclear magnetic resonance), CD (circular dichroism), calorimeters, and electron microscopy have been used for detection of aggregation process. Nevertheless, we cannot identified cellular mechanisms of protein misfolding and related diseases clearly yet. In the future, scientists will concentrate on design of practical and fast methods for detection of protein aggregation in cells.
This work was funded through a seed grant from the Turkish National Academy of Sciences (TUBA GEBIP 2008-29 for YT).
Tutar L, Tutar Y. Heat shock proteins: An overview. Current Pharmaceutical Biotechnology 2010; 11(2):216-222.
Wang W. Protein aggregation and its inhibition biopharmaceutics. International Journal of Pharmaceutics 2005; 289: 1-30.
Stefani M. Protein misfolding and aggregation: new examples in medicine and biology of the dark side of the protein world. BiochimiaetBiophysicaActa 2004; 1739: 5-25.
Chaudhuri TK, Paul S. Protein-misfoldingdiseases and chaperone-based therapeutic approaches. FEBS Journal 2006; 1331-1349.
Adachi H, Katsuno M, Waza M, Minamiyama M, Tanaka F, Sobue G. Heat shock protins in neurodegenerative diseases: Pathogenic roles and therapeutic implications. International Journal of Hyperthermia 2009; 25(8): 647-654.
Soto C, Estrada, LD. Protein misfolding and neurodegeneration. Arch Neurol2008; 65(2): 184-189.
Lee SJ, Lim HS, Masliah E, Lee HJ. Protein aggregate spreading in neurodegenerative diseases: Problems and perspectives. Neuroscience Research 2011; 70: 339-348.
Shastry BS. Neurodegenerative disorders of protein aggregation. Neurochemistry International 2003; 43: 1-7.
Trzesniewska K, Brzyska M, Elbaum D. Neurodegenerative aspects of protein aggregation. ActaNeurobiolExp 2004; 64: 41-52.
Ross CA, Poirier MA. Protein aggregation and neurodegenerative diseases. Nature Medicine 2004; DOI: 10.1038/nm1066.
Philo JS, Arakawa T. Mechanisms of protein aggregation. Current Pharmaceutical Biotechnology 2009; 10: 348-351.
Hur K, Kim JI, Choi SI, Choi EK, Carp RI, Kim YS. The pathogenic mechanisms of prion protein. Mechanisms of Ageing and Development 2002; 123: 1637-1647.
Lee C, Y MH. Protein folding and diseases. Journal of Biochemistry and Molecular Biology 2005; 38(3): 275-280.
Wilson AC, Dugger BN, Dickson DW, Wang DS. TDP-43 in aging and Alzheimer’s disease – a review. Int J ClinExpPathol 2011;4(2):147-155.
Karve TM, Cheema AK. Small changes huge impact: The role of protein posttranslational modiﬁcations in cellular homeostasis and disease. Journal of Amino Acids 2011; DOI:10.4061/2011/207691
Buee L, Bussiere T, Buee-Scherrer V, Delacourte A, Hof PR. Tau protein isoforms, phosphorylation and role in neurodegenerative disorders. Brain Research Reviews 2000; 33: 95-130.
Martin L, Latypova X, Terro F. Post-translational modifications of tau protein: Implications for Alzheimer’s disease. Neurochemistry International 2011; 58: 458-471.
Rudd PM, Merry AH, Wormald MR, Dwek RA. Glycosylation and prion protein. Current Opinion in Structural Biology 2002; 12: 578-586.
Rudd PM, Wormald MR, Wing DR, Prusiner SB, Dwek RA. Prion glycoprotein: Structure, dynamics, and roles for the sugar. Biochemistry 2001; 40(13): 3759-3766.
Guest WC, Plotkin SS, Cashman NR. Toward a mechanisms of prion misfolding and structural models of PrPSc: Current knowledge and future directions. Journal of Toxicology and Environmental Health, Part A 2011; 74: 154-160.
Pogocki D. Alzheimer’s β-amyloid peptide as a source of neurotoxic free radicals: the role of structural effects. ActaNeurobiolExp 2003; 63: 131-145.
Moulton PV, Yang W. Air pollution, oxidative stress, and Alzheimer’s Disease. Journal of Environmental and Public Health 2012; DOI:10.1155/2012/472751.
Treuheit MJ, Kosky AA, Brems DN. Inverse relationship of protein concentration and aggregation. Pharmaceutical Research 2002; 19(4): 511-516.
DeMArco ML, Daggett V. Local environmental effects on the structure of the prion protein. C R Biologies 2005; 328: 847-862.
Finl AL. The aggregation and fibrillation of α-synuclein. AccChem Res 2006; 39: 628-634.
Wadsworth JDF, Collinge J. Update on human prion diseases. BiochimiaetBiophysicaActa 2007; 1772: 598-609.
Mehrpour M, Codogno P. Prion protein: From physiology to cancer biology. Cancer Letters 2010; 290: 1-23.
Hu W, Kieseier B, Frohman E, Eagar TN, Rosenberg RN, Hartung HP, Stüve O. Prion protein: Physiological functions and role in neurological disorders. Journal of Neurological Sciences 2008; 264: 1-8.
Cohen FE. Protein misfolding and prion diseases. Journal of Molecular Biology 1999; 293: 131-320.
Milhavet O, McMahon HEM, Rachidi W, Nishida N, Katamine S, Mange A, Arlotto M, Casanova D, Riondel J, Favier A, Lehmann S. Prion infection impairs the cellular response to oxidative stress. PNAS 2000; 97(25): 13937-13942.
Westergard L, Christensen HM, Harris DA. The cellular prion protein (PrPC): Its physiological function and role in disease. BiochimicaetBiophysicaActa 2007; 1772: 629-644.
Garnett AP, Viles JH. Copper Binding to the octarepeats of the prion protein. Journal of Biological Chemistry 2003; 278(9): 6795-6802.
MilhauserGL. Copper binding in the prion protein. AccChem Res 2004; 37(2): 79-85.
Viles JH, Cohen FD, Prusiner SB, Goodin DB, Wright PE, Dyson HJ. Copper binding to the prion protein: Structural implications of four identical cooperative binding sites. ProcNatlAcadSci 1999; 96: 2042-2047.
Calabrese MF, Miranker AD. Metal binding sheds light on mechanisms of amyloid assembly. Prion 2009; 3(1): 1-4.
Daggett V. Structure-function aspects of prion proteins. Current Opinion in Biotechnology 1998; 9: 359-365.
Taylor DR, Hooper NM. The prion protein and lipid rafts. Molecular Membrane Biology 2006; 23(1) 89-99.
Wang F, Yang F, Hu Y, Wang X, Wang X, Jin C, Ma J. Lipid interaction converts prion protein to a PrPSc-like proteinase K-resistant conformation under physiological conditions. Biochemistry 2007; 46: 7045-7053.
Critchley P, Kazlauskaite J, Eason R, Pinheiro TJT. Binding of prion proteins to lipid membranes. Biochemical and Biophysical Research Communications 2004; 313: 559-567.
Rushworth JV, Hooper NM. Lipid Rafts: Linking Alzheimer’s amyloid-β production, aggregation, and toxicity at neuronal membranes. International Journal of Alzheimer’s Disease 2011; DOI:10.4061/2011/603052.
Kolarova M, Garcia-Sierra F, Bartos A, Ricny J, Ripova D. Structure and pathology of tau protein in Alzheimer Disease. International Journal of Alzheimer’s Disease 2012; DOI:10.1155/2012/731526.
Bulic B, Pickharth M, Mandelkow EM, Mandelkow E. Tau protein and tau aggregation inhibitors. Neuropharmacy 2010; 59: 276-289.
Li L, Bergen MV, Mandelkow EM, Mandelkow E. Structure, Stability, and Aggregation of paired helical filaments from tau protein and FTDP-17 mutants probed by tryptophan scanning mutagenesis. Journal of Biological Chemistry 2002; 277(44): 41390-41400.
Bergen MV, Friedhoff P, Biernat J, Heberle J, Maldelkox EM, Maldelkow E. Assembly of t protein into Alzheimer paired helicalfilaments depends on a local sequence motif (306VQIVYK311) forming β structure. Biochemistry 2000; 97(10): 5129-5134.
Avila J. Tau phosphorylation and aggregation in Alzheimer’s diseases pathology. FEBS Letters 2006; 580: 2922-2927.
Du JT, Li YM, Ma QF, Qiang W, Zhao YF, Abe H, Kanazawa K, Qin XR, Aoyagi R, Ishizuka Y, Nemoto T, Nakanishi H. Synthesis and conformational properties of phosphopeptides related to the human tau protein. Regulatory Peptides 2005; 130: 48-56.
Connell JW, Gibb GM, Betts JC, Blacstock WP, Gallo JM, Lovestone S, Hutton M, Anderton BH. E¡ects of FTDP-17 mutations on the in vitro phosphorylation of tau byglycogen synthase kinase 3 βidentified by mass spectrometry demonstrate certain mutations exert long-range conformational changes. FEBS Letters 2001; 493: 40-44.
Bunker JM, Kamath K, Wilson L, Jordan MA, Feinstein SC. FTDP-17 Mutations compromise the abilityoftautoregulatemicrotubuledynamicsincells. JBC Papers 2006; DOI: 10.1074/jbc.M509420200.
Goedert M. Tau protein and neurodegeneration. Seminars in Cell&Developmental Biology 2004; 15: 45-49.
Dimakopoulos AC. Protein aggregation in Alzheimer’s diseases and other neuropathological disorders. Current Alzheimer Research 2005; 2: 19-28.
Baumketner A, Bernstein SL, Wyttenbach T, Lazo ND, Teplow DB, Bowers MT, Shea JE. Structure of the 21-30 fragment of amyloid β-protein. Protein Science 2006; 15: 1239-1247.
Crescenzi O, Tomaselli S, Guerrini R, Salvadori S, D’Ursi AM, Temussi PA, Picone D. Solution structure of the Alzheimer amyloid β-peptide (1-42) in an apolar microenvironment. Eur J Biochem 2002; 269: 5642-5648.
Estrada LD, Soto C. Disrupting β-amyloid aggregation for Alzheimer diseases treatment. Current Topics in Medicinal Chemistry 2007; 7: 115-126.
Li M, Chen L, Lee DHS, Yu LC, Zhang Y. The role of intracellular amyloid β in Alzheimer’s diseases. Progress in Neurobiology 2007; 83: 131-139.
Dauer W, Przedborski S. Parkinson’s diseases: Mechanisms and Models. Neuron 2003; 39: 889-909.
Ma QL, Chan P, Yoshii M, Ueda K. α-Synuclein aggregation and neurodegenerative diseases. Journal of Alzheimer’s Diseases 2003; 5: 139-148.
McNaught KSP, Olanow CW. Protein aggregation in the pathogenesis of familial and sporadic Parkinson’s diseases. Neurobiology of Aging 2006; 27: 530-545.
Valtierra S. α-Synuclein phosphorylation and nitration in Parkinson’s disease. Eukaryon 2008; 4: 90-94.
Khandelwal PJ, Dumanis SB, Feng LR, Maguire-Zeiss K, Rebeck GW, Lashuel HA, Moussa CEH. Parkinson-related parkin reduces α-Synuclein phosphorylation in a gene transfer model. Molecular Neurodegeneration 2010; 5(47): 1-13.
Mizuna Y, Hattori N, Mori H. Genetics of Parkinson’s diseases. Biomed &Pharmacother 1999; 53: 109-116.
Licker V, Kövari E, Hochstrasser DF, Burkhard PR. Proteomics in human Parkinson’s diseases research. Journal of Proteomics 2009; 73: 10-29.
Gitler AD, Chesi A, Geddie ML, Strathearn KE, Hamamichi S, Hill KJ, Caldwell GA, Cooper AA, Rochet JC, Lindquist S. α-Synuclein is part of a diverse and highly conserved interaction network that includes PARK9 and manganese toxicity. Nature Genetics 2009; 41(3): 308-315.
Carla M, Tome L, Tyson T, Rey NL, Grathwohl S, Britscgi M, Brundin P. Inflammati on and α-Synuclein ’s prion-like behavior in Parkinson's disease—Is there a link? MolNeurobiol 2012; DOI 10.1007/s12035-012-8267-8.
Kim EJ, Sung JY, Lee HJ, Rhim Y, Hasegawa M, Iwatsubo T, Min DS, Kim J, Paik SR, Chung, KC. Dyrk1A phosphorylates α-synuclein and enhances intracellular inclusion formation. The Journal of Biological Chemistry 2006; 281(44): 33250-33257.
Uverski VN, Yamin G, Souillac PO, Goers J, Glaser CB, Fink AL. Methionine oxidation inhibits fibrillation of human alphasynuclein in vitro. FEBS Letters 2002; 517: 239-244.
Ross RAC. Huntington ’s disease: A clinical review. Journal of Rare Diseases 2010; 5(40): 1-8.
Gusella JF, MacDonald ME. Huntington: A single bait hooks many species. Current Opinion in Neurobiology 1998; 8: 425-430.
Ramaswamy S, Shannon KM, Kordower JH. Huntington ’s disease: Pathological mechanisms and therapeutic strategies. Cell Transplantation 2007; 16: 1-100.
Margolis RL, Rudnicki DD, Holmes SE. Huntington’s disease like-2: Review and update. ActaNeurol Taiwan 2005; 14: 1-8.
Walker FO. Huntington’s diseases. Lancet 2007; 369: 218-228.
Perez De-La Cruz V, Santamaria A. Integrative hypothesis for Huntington’s disease: A brief review of experimental evidence. Physiol Res 2007; 56: 513-526.
Gudesblatt M, Tarsy D. Huntington’s diseases: A clinical review. Neurobiology Reviews 2011.
Perutz M. Polar zippers: Their role in human disease. Protein Science 1994; 3: 1629-1637.
Hoffner G, Djan P. Transglutamine and diseases of the central nervous system. Frontiers in Bioscience 2005; 10: 3078-3092.
Newcomer ME. Trading places. Nature 2001; 8(4): 282-284.
Bukau B, Weissman J, Horwich A. Molecular chaperons and protein quality control. Cell 2006; 125: 443-451.
Mayer MP. Gymnastics of molecular chaperones. Cell 2010; DOI:10.1016/j.molcel.2010.07.012
Dou F, Netzer WJ, Takashima A, Xu H. Heat shock proteins reduce aggregation and facilitate degradation of tau protein. International Congress Series 2003; 1252: 383-393.
Fan CY, Lee S, Douglas MC. Mechanisms for regulation of Hsp70 function by Hsp40. Cell Stress & Chaperones 2003; 8(4): 309-316.
Mapa K, Sikor M, Kudryavtsev V, Waegemann K, Kalinin S, Seidel CAM, Neupert W, Lamb DC, Mokranjac D. The conformational dynamics of the mitochondrial Hsp70 chaperone. Cell 2010; 38: 89-100.
Turturici G, Sconzo G, Geraci F. Hsp70 and its molecular role in nervous system diseases. Biochemistry Research International 2011; DOI: 10.1155/2011/618127.
Luo GR, Chen S, Le WD. Are heat shock proteins therapeutic target for Parkinson’s diseases? International Journal of Biological Sciences 2007; 3(1): 20-26.
Söti C, Csermely P. Chaperons and aging: Role in neurodegeneration and in other civilization diseases. Neurochemistry International 2002; 41: 383-389.
Li J, Bingdon SHA. Structure-based mutagenesis studies of the peptide substrate binding fragment of type I heat-shock protein 40. Biochem J 2005; 386: 453-460.
Faou P, Hoogenraad NJ, Tom34: A cytosolic cochaperone of the Hsp90/Hsp70 protein complex involved in mitochondrial protein import. BiochimiaetBiophysicaActa 2012; 1823: 348-357.
Luo W, Sun W, Taldone T, Rodina A, Chiosis G. Heat shock protein 90 in neurodegenerative diseases. Molecular Neurodegeneratin 2010; 5(24): 1-8.
Sun Y, MacRae TH. The small heat shock proteins and their role in human diseases. FEBS Journal 2005; 272: 2613-2627.
Outeiro TF, Klucken J, Strathearn KE, Liu F, Nguyen P, Rochet JC, Hyman BT, McLean PJ. Small heat shock proteins protect against α-synuclein-induced toxicity and aggregation. Biochemical and Biophysical Research Communications 2006; 351: 631-638.
Wilhelmus MMM, Boelens WC, Otte-Höller I, Kamps B, De Wall RMW, VErbeek MM. Small heat shock proteins inhibit amyloid-β protein aggregation and cerebrovascular amyloid-β protein toxicity. Brain Research 2006; 1089: 67-78.
Jiao W, Li P, Zhang J, Zhang H, Chang Z. Small heat-shock proteins function in the insoluble protein complex. Biochemical and Biophysical Research Communications 2005; 335: 227-231.