\\n\\n
IntechOpen Book Series will also publish a program of research-driven Thematic Edited Volumes that focus on specific areas and allow for a more in-depth overview of a particular subject.
\\n\\nIntechOpen Book Series will be launching regularly to offer our authors and editors exciting opportunities to publish their research Open Access. We will begin by relaunching some of our existing Book Series in this innovative book format, and will expand in 2022 into rapidly growing research fields that are driving and advancing society.
\\n\\nLaunching 2021
\\n\\nArtificial Intelligence, ISSN 2633-1403
\\n\\nVeterinary Medicine and Science, ISSN 2632-0517
\\n\\nBiochemistry, ISSN 2632-0983
\\n\\nBiomedical Engineering, ISSN 2631-5343
\\n\\nInfectious Diseases, ISSN 2631-6188
\\n\\nPhysiology (Coming Soon)
\\n\\nDentistry (Coming Soon)
\\n\\nWe invite you to explore our IntechOpen Book Series, find the right publishing program for you and reach your desired audience in record time.
\\n\\nNote: Edited in October 2021
\\n"}]',published:!0,mainMedia:{caption:"",originalUrl:"/media/original/132"}},components:[{type:"htmlEditorComponent",content:'With the desire to make book publishing more relevant for the digital age and offer innovative Open Access publishing options, we are thrilled to announce the launch of our new publishing format: IntechOpen Book Series.
\n\nDesigned to cover fast-moving research fields in rapidly expanding areas, our Book Series feature a Topic structure allowing us to present the most relevant sub-disciplines. Book Series are headed by Series Editors, and a team of Topic Editors supported by international Editorial Board members. Topics are always open for submissions, with an Annual Volume published each calendar year.
\n\nAfter a robust peer-review process, accepted works are published quickly, thanks to Online First, ensuring research is made available to the scientific community without delay.
\n\nOur innovative Book Series format brings you:
\n\nIntechOpen Book Series will also publish a program of research-driven Thematic Edited Volumes that focus on specific areas and allow for a more in-depth overview of a particular subject.
\n\nIntechOpen Book Series will be launching regularly to offer our authors and editors exciting opportunities to publish their research Open Access. We will begin by relaunching some of our existing Book Series in this innovative book format, and will expand in 2022 into rapidly growing research fields that are driving and advancing society.
\n\nLaunching 2021
\n\nArtificial Intelligence, ISSN 2633-1403
\n\nVeterinary Medicine and Science, ISSN 2632-0517
\n\nBiochemistry, ISSN 2632-0983
\n\nBiomedical Engineering, ISSN 2631-5343
\n\nInfectious Diseases, ISSN 2631-6188
\n\nPhysiology (Coming Soon)
\n\nDentistry (Coming Soon)
\n\nWe invite you to explore our IntechOpen Book Series, find the right publishing program for you and reach your desired audience in record time.
\n\nNote: Edited in October 2021
\n'}],latestNews:[{slug:"webinar-introduction-to-open-science-wednesday-18-may-1-pm-cest-20220518",title:"Webinar: Introduction to Open Science | Wednesday 18 May, 1 PM CEST"},{slug:"step-in-the-right-direction-intechopen-launches-a-portfolio-of-open-science-journals-20220414",title:"Step in the Right Direction: IntechOpen Launches a Portfolio of Open Science Journals"},{slug:"let-s-meet-at-london-book-fair-5-7-april-2022-olympia-london-20220321",title:"Let’s meet at London Book Fair, 5-7 April 2022, Olympia London"},{slug:"50-books-published-as-part-of-intechopen-and-knowledge-unlatched-ku-collaboration-20220316",title:"50 Books published as part of IntechOpen and Knowledge Unlatched (KU) Collaboration"},{slug:"intechopen-joins-the-united-nations-sustainable-development-goals-publishers-compact-20221702",title:"IntechOpen joins the United Nations Sustainable Development Goals Publishers Compact"},{slug:"intechopen-signs-exclusive-representation-agreement-with-lsr-libros-servicios-y-representaciones-s-a-de-c-v-20211123",title:"IntechOpen Signs Exclusive Representation Agreement with LSR Libros Servicios y Representaciones S.A. de C.V"},{slug:"intechopen-expands-partnership-with-research4life-20211110",title:"IntechOpen Expands Partnership with Research4Life"},{slug:"introducing-intechopen-book-series-a-new-publishing-format-for-oa-books-20210915",title:"Introducing IntechOpen Book Series - A New Publishing Format for OA Books"}]},book:{item:{type:"book",id:"8262",leadTitle:null,fullTitle:"The New Forms of Social Exclusion",title:"The New Forms of Social Exclusion",subtitle:null,reviewType:"peer-reviewed",abstract:'This is the first book that broadly delves into the theme of social exclusion and how it has changed through culture and society. It represents a very important, innovative, and current attempt to describe new forms of social exclusion in society and takes into account the contribution of different disciplines with different points of view. The authors offer a very interesting and novel contribution to the field of new forms of social exclusion, reporting their theoretical perspectives, the original results of their research, and their discussions. "Exclusion is always dangerous. Inclusion is the only safety if we are to have a peaceful world." Pearl S. Buck',isbn:"978-1-83880-609-5",printIsbn:"978-1-83880-608-8",pdfIsbn:"978-1-78985-507-4",doi:"10.5772/intechopen.78246",price:100,priceEur:109,priceUsd:129,slug:"the-new-forms-of-social-exclusion",numberOfPages:86,isOpenForSubmission:!1,isInWos:null,isInBkci:!1,hash:"29bf235aa7659d3651183fe9ea49dc0d",bookSignature:"Rosalba Morese and Sara Palermo",publishedDate:"June 5th 2019",coverURL:"https://cdn.intechopen.com/books/images_new/8262.jpg",numberOfDownloads:4396,numberOfWosCitations:5,numberOfCrossrefCitations:12,numberOfCrossrefCitationsByBook:0,numberOfDimensionsCitations:17,numberOfDimensionsCitationsByBook:0,hasAltmetrics:0,numberOfTotalCitations:34,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"May 3rd 2018",dateEndSecondStepPublish:"May 24th 2018",dateEndThirdStepPublish:"July 23rd 2018",dateEndFourthStepPublish:"October 11th 2018",dateEndFifthStepPublish:"December 10th 2018",currentStepOfPublishingProcess:5,indexedIn:"1,2,3,4,5,6",editedByType:"Edited by",kuFlag:!1,featuredMarkup:null,editors:[{id:"214435",title:"Dr.",name:"Rosalba",middleName:null,surname:"Morese",slug:"rosalba-morese",fullName:"Rosalba Morese",profilePictureURL:"https://mts.intechopen.com/storage/users/214435/images/system/214435.jpg",biography:"Rosalba Morese, born in Italy, holds a bachelor\\'s degree in psychology at the University of Parma and a Ph.D. in neuroscience at the University of Turin. She aims to develop new techniques and approaches in cognitive science and social neuroscience. She is an expert in experimental neuroscience, neuroeconomics, psychophysiology, and cognitive and social neuroscience. She performs neuroimaging studies in social contexts in order to investigate neural correlates involved during social interactions, such as, social exclusion, social support, empathy, communicative intention, social decision-making, in-group and out-group settings, etc. She currently works at Università della Svizzera italiana, Lugano, Switzerland.\n\nFor more information: http://usi.to/xuj",institutionString:"Faculty of Biomedical Sciences",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"8",totalChapterViews:"0",totalEditedBooks:"4",institution:{name:"Universita della Svizzera Italiana",institutionURL:null,country:{name:"Switzerland"}}}],equalEditorOne:null,equalEditorTwo:null,equalEditorThree:null,coeditorOne:{id:"233998",title:"Ph.D.",name:"Sara",middleName:null,surname:"Palermo",slug:"sara-palermo",fullName:"Sara Palermo",profilePictureURL:"https://mts.intechopen.com/storage/users/233998/images/system/233998.png",biography:"Sara Palermo has an MSc in clinical psychology and a PhD in experimental neuroscience. She is specialty chief editor of Frontiers in Psychology, Neuropsychology, and scientific director of the Italian National Institute of Philanthropy, Filantropolis. She is a member of the Italian Society of Neuropsychology, the Italian Association of Psychogeriatrics, the Italian Society of Neurology for Dementia, and the Society for Interdisciplinary Placebo Studies. She was a member of the European Innovation Partnership on Active and Healthy Ageing (EIP AHA), for which she was involved in Action Group A3: Action for Prevention of Functional Decline and Frailty. 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In this chapter, it is defined as a possible ability of an individual or a group to face, manage, and anticipate a possible problem. This concept of vulnerability is associated with that of risk factor for social isolation, and therefore to situations that can also lead to illness and lack of mental and physical health. It can have its roots in poverty, in social exclusion, in ethnicity, in disability or simply in disease or specific developmental phases in life. All these aspects reflect very important vulnerability factors among biological, psychological, social, and behavioral variables. To date, no one has highlighted together two critical moments in life in which this brain area undergoes important variations: adolescence, in which its development occurs, and old age, in which this area goes into cognitive decline with the relative loss of many higher cognitive functions. This knowledge can help to better understand the forms of exclusion due to vulnerability in order to develop new forms of social inclusion.",signatures:"Rosalba Morese, Sara Palermo, Matteo Defedele, Juri Nervo and Alberto Borraccino",downloadPdfUrl:"/chapter/pdf-download/66422",previewPdfUrl:"/chapter/pdf-preview/66422",authors:[{id:"214435",title:"Dr.",name:"Rosalba",surname:"Morese",slug:"rosalba-morese",fullName:"Rosalba Morese"},{id:"233998",title:"Ph.D.",name:"Sara",surname:"Palermo",slug:"sara-palermo",fullName:"Sara Palermo"},{id:"218983",title:"BSc.",name:"Juri",surname:"Nervo",slug:"juri-nervo",fullName:"Juri Nervo"},{id:"218984",title:"MSc.",name:"Matteo",surname:"Defedele",slug:"matteo-defedele",fullName:"Matteo Defedele"},{id:"266453",title:"Prof.",name:"Alberto",surname:"Borraccino",slug:"alberto-borraccino",fullName:"Alberto Borraccino"}],corrections:null},{id:"63833",title:"Living in Italy in an Anti-Immigrant Scenario: New Challenges for Muslim Second Generations",doi:"10.5772/intechopen.81280",slug:"living-in-italy-in-an-anti-immigrant-scenario-new-challenges-for-muslim-second-generations",totalDownloads:844,totalCrossrefCites:0,totalDimensionsCites:0,hasAltmetrics:0,abstract:"Analysing whether and how the transition from the first to the second generation transforms adherence to Islam in Italy, a Catholic country which is undergoing a Lively immigration and Muslim-welcoming debate, is extremely interesting. The growing presence of Muslims in Italy stresses relations with ‘diversity’, especially in those areas where the incidence of migrants coming from Maghreb is higher and where there is an Arabic presence visible through ethnic shops, women wearing the chador and men wearing long robes. In these areas, the issues of control and safety have been on the agenda for many years. On the other hand, according to Muslim organizations there is a common interest in presenting a ‘moderate Islam’. There is a specific will and interest of the youngest Muslim generations to demonstrate their propensity to promote integration, using both old (debates, meetings, etc.) and new (websites, blog, etc.) policy tools.",signatures:"Roberta Ricucci",downloadPdfUrl:"/chapter/pdf-download/63833",previewPdfUrl:"/chapter/pdf-preview/63833",authors:[{id:"258433",title:"Associate Prof.",name:"Roberta",surname:"Ricucci",slug:"roberta-ricucci",fullName:"Roberta Ricucci"}],corrections:null},{id:"63724",title:"Social Exclusion and Territorial Dispossession: A Reflection on Mining Activity in Peru and Mexico",doi:"10.5772/intechopen.80689",slug:"social-exclusion-and-territorial-dispossession-a-reflection-on-mining-activity-in-peru-and-mexico",totalDownloads:742,totalCrossrefCites:0,totalDimensionsCites:2,hasAltmetrics:0,abstract:"From the social struggles that are found all over the globe, it is important to try to analyze the territorial dispossession suffered by the peasant communities, by the transnational mining companies. For this, we rely on categories such as accumulation through elimination in order to know if social exclusion is an event in the development of capitalism or responds to an abrupt struggle between labor and capital. In this sense, we are interested in focusing our study on two cases that are found in Peru and Mexico. In such regions, social mobilization has not only developed as a generalized form of rejection of mining but also accounts for the contradictions of the mining industry.",signatures:"John Kenny Acuña Villavicencio",downloadPdfUrl:"/chapter/pdf-download/63724",previewPdfUrl:"/chapter/pdf-preview/63724",authors:[{id:"259795",title:"Dr.",name:"J. Kenny",surname:"Acuña Villavicencio",slug:"j.-kenny-acuna-villavicencio",fullName:"J. 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However, one applies words related to the spirit level, while another adapts words related to the physical level. The female or male desirability can be expressed by using metaphor. 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These infections are not only restricted to humans, they are also predominant in animal health. Just a few years ago infectious diseases caused by parasites were classified as an issue of the past. Due to the elevating level of drug resistance of these pathogens against the current chemotherapeutics, the need for new drugs became even more important. In particular parasitic diseases such as malaria, leishmaniasis, trypanosomiasis, amoebiasis, trichomoniasis, soil-transmitted helminthiasis, filariasis and schistosomiasis are major health problems, especially in “developing” areas (Renslo and McKerrow, 2006; Pal and Bandyopadhyay, 2012). A variety of these parasitic diseases, which comprises the so called neglected diseases Chagas disease, leishmaniasis, sleeping sickness, schistosomiasis, lymphatic filariasis, onchocerciasis and of course malaria (Chatelain and Ioset, 2011), are transmitted by vectors and therefore attempts to combat transmission became prominent. In contrast to the treatment of bacterial infections with antibiotics there are no “general” antiparasitic drugs. The use of a specific drug is dependent on the parasitic organism and therefore has to be individually chosen (Khaw et al., 1995).
Reactive oxygen species (ROS) and oxidative stress are the inevitable consequences of aerobic metabolism, with partially reduced and highly reactive metabolites of O2 being formed in the mitochondria (Andreyev et al., 2005) or as by-products of other cellular sources such as the cytoplasm, the endoplasmatic reticulum, the plasma membrane and peroxisomes. Furthermore, environmental agents such as ionizing and UV radiation or xenobiotic exposure can generate intracellular ROS. O2 metabolites include superoxide anion (O2-) and hydrogen peroxide (H2O2), formed by one- and two electron reductions of O2 or the highly reactive hydroxyl radical (‧OH) which is formed in the presence of metal ions via Fenton and/or Haber-Weiss reactions (Massimine et al., 2006). At physiologically low levels, ROS can function as second messenger in redox signaling, with H2O2 best providing the specificity in its interaction with effectors in signaling processes (Forman et al., 2010). Balancing the generation and elimination of ROS maintains the proper function of redox-sensitive signalling proteins. However, severe increases of ROS induce oxidative modifications in the cellular macromolecules DNA, proteins and lipids, this leading to a disruption of redox homeostasis and irreversible oxidative damage (Trachootham et al., 2008). Depending on the cellular context, the levels of ROS and the redox state of the cells, alterations of the delicate redox balance can promote cell proliferation and survival or induce cell death.
To maintain redox homeostasis and eliminate ROS, aerobes are equipped with enzymatic/nonenzymatic antioxidants and metal sequestering proteins to either prevent or intercept the formation of pro-oxidants. Furthermore, protective mechanisms are put in place to repair and replace damaged macromolecules. Two central thiol/disulfide couples are involved in controlling the redox state of the cell: glutathione/glutathione disulfide (GSH/GSSG) is the major redox couple that determines the antioxidative capacity of cells, other redox couples include the active site dithiol/disulfide of thioredoxins (Trxred/Trxox) interacting with a different subset of proteins and thus forming a distinct but complementary redox system (Jones and Go, 2010).
Enzymatic antioxidants can be categorized into primary or secondary antioxidants, the first reacting directly with pro-oxidants (e.g. catalase, superoxide dismutase), the latter are involved in the regeneration of low molecular weight antioxidant species (Halliwell, 1999). Here, the reduced state of GSSG and Trx-enzymes is restored by the glutathione reductase (GSR) and the Trx reductase using electrons obtained from NADPH. Additionally glutaredoxins (Glrx) utilize GSH for the reduction of intracellular disulfides (Fernandes and Holmgren, 2004). While Trx, Trx reductase and Trx peroxidase (peroxiredoxin, Prx) constitute the Trx-system, the versatile GSH-system includes enzymes required for GSH synthesis and recycling, for its use in metabolism, in defense against ROS-induced damage and in a multitude of detoxification processes. Furthermore, for normal GSH turnover and disposition of GSH-conjugated metabolites and xenobiotics, export from the cell is required that is carried out by GSH efflux transporters and pumps (Sies, 1999) (Fig. 1).
In spite of the diversity of parasites, all are faced with similar biological problems that are related to their lifestyle. Besides coping with ROS levels generated from intrinsic sources, all have to deal with the oxidative stress imposed by the host´s immune response. Furthermore, parasites are faced with ROS that are produced during the epithelial innate immune response of their vector, by vector-resident gut bacteria (Cirimotich et al., 2011) or during melanotic encapsulation processes (Kumar et al., 2003).
Since the redox system plays such a fundamental and indispensable role for parasite survival within their host (Massimine et al., 2006), drugs that either promote ROS generation or inhibit cellular antioxidant systems will lead to redox imbalance by pushing ROS levels above a certain threshold level that will ultimately lead to parasite death (Müller et al., 2003). In general, drugs that target vital redox reactions or promote oxidative stress are named redox-active antiparasitic drugs (Seeber et al., 2005) on which we will mainly focus within this chapter.
Leishmaniasis is caused by the protozoan flagellate
Despite the fact that antimonials were already identified in 1921, they still remain the first-line treatment, although the precise mode of action is not known. But it is generally accepted that pentavalent antimonials (SbV) represent a pro-drug which is converted to trivalent antimonials (SbIII) for antileishmanial activity. Recently it has been indicated that thiols act as reducing agents in this conversion. Furthermore, the participation of a unique parasite-specific trimeric glutathione transferase TDR1 in the activation of antimonial prodrugs has been suggested (Fyfe et al., 2012).
Treatment with antimonials requires parenteral administration and is accompanied by toxic side effects such as cardiac arrhythmia and acute pancreatitis (Sundar and Rai, 2002). Some studies have been carried out to investigate the activity mechanism of antimonials which correlates with an interference with the antioxidant defence system of the parasite: Trivalent antimonials decrease the thiol-reducing capacity of
Amphotericin B (Fig. 2), a polyene macrolide, has been employed in the treatment of
Miltefosine (hexadecylphosphocholine) is the first and currently the only, orally administered antileishmanial drug (Fig. 2). However, despite cure rates of up to 98% (Roberts, 2006), the drug reveals serious side effects such as vomiting, diarrhea and can cause abnormal physiological development of the foetus. Furthermore, the drug has a relatively long half-life of about 150 hours (Seifert et al., 2007; Maltezou, 2010) which could lead to the development of rapid resistance. Related to its structure, the drug possibly interferes with membranes and membrane-linked enzymes. Currently no verified implications of the drug within the redox biology of the parasite have been found (Rakotomanga et al., 2004; Saint-Pierre-Chazalet et al., 2009).
Malaria is a devastating and quite often a deadly parasitic disease, which causes important public health problems in the tropics. The population in more than 90 countries, with more than 2000 million citizens, is exposed to the infection. Malaria infection is responsible for an estimated 500 million clinical cases per annum, causing more than one million deaths; most of these are children in Africa. The malaria parasite
In general,
The GSH-system plays an important role in the maintenance of the redox status in
The GST is one of the most abundant proteins expressed in
Another promising antimalarial drug target is the
For many years it was thought that the malaria parasite had no need for an endogenous SOD and simply adopted the host´s enzyme for its purpose. However, in 2002, an iron-dependent SOD was described in
Besides the attacks of the immune systems of the respective host, where ROS are deployed to kill invading pathogens, the parasite faces another even bigger challenge:
Schematic illustration of the glutathione (GSH) system. GSH homeostasis involves intra- and extracellular mechanisms. GSH is synthesized from amino acids (AA) by the action of γ-glutamylcysteine synthetase (γ-GCS) and glutathione synthase (GSH-S), both requiring ATP. As antioxidant, GSH participates in the reduction of peroxides, catalysed by glutathione peroxidase (GPx), in the reduction of protein-disulfides, catalysed by glutaredoxins (Grx) and in conjugation reactions with electrophils (eg. xenobiotics, X), catalysed by glutathione transferases (GSTs). The glutathione conjugates (GS-X) and GSSG are transported out of the cell via GS-X/GSSG pumps. The NADPH-dependent GSH reductase (GR) is responsible for the intracellular recycling of GSH, while extracellular GSH gets sequentially hydrolysed by γ-glutamyl transpeptidase (γ-GT) and dipeptidase (DPD), with glutamate, cysteine and glycine being recycled for GSH synthesis (γ-glutamyl cycle).
A number of drugs have been identified that act as inhibitors of the hemozoin formation by binding to heme. This leads to an accumulation of free heme, causes high levels of oxidative stress and ends in the death of the parasite (Meunier et al., 2010). Quinoline-containing derivatives such as amopyroquine, amodiaquine, tebuquine, halofantrine, pyronaridine, quinine, mepacrine, epiquinine, quinidine, bisquinoline chloroquine (see figure 2) are highly potent antimalarials that inhibit hemozoin formation at EC50-values in the low nano-molar range (Egan et al., 2000; Kotecka et al., 1997; O’Neill et al., 2003; Vennerstrom et al., 1992). Azole derivatives are also inhibitors of the hemozoin formation and reveal efficacy against chloroquine sensitive as well as resistant plasmodial strains (Banerjee et al., 2009; Rodrigues et al., 2011). Another novel class, which has been identified to interact with heme and thereby prevent the hemozoin formation, are xanthones (Docampo et al., 1990; Ignatushchenko et al., 1997; Xu Kelly et al., 2001). Moreover, a variety of isonitrile derivatives gain their antimalarial activity from inhibition of the hemozoin synthesis (Kumar et al., 2007; Wright et al., 2001) resulting in EC50-values in the low nano-molar range (Badyopadhyay et al., 2001; Singh et al., 2002; Kumar et al., 2007). Benzylmenadione derivatives do not show any cytotoxicity against two human cell lines while they are effective against the chloroquine resistant
Helminths are parasitic worms that encompass nematodes (roundworms), cestodes and trematodes (flatworms) and affect humans in all areas of the world, with more than one-third of humans harbouring these parasites that cause chronic, debilitating morbidity. Furthermore, co-endemicity and polyparasitism increase the burden of millions (Hotez et al., 2008). In the absence of vaccines, control relies on pharmacotherapy and pharmacoprophylaxis to easy symptoms and reduce transmission. Helminthosis are treated with a limited number of anthelmintics by chemotherapy of symptomatic individuals or, more general, by control programmes that rely on mass drug administration (MDA) and require annual or biannual treatment of at-risk populations over prolonged period of time (Prichard et al., 2012). A major problem, however, is the development of resistance or tolerance by the parasites to these common antiparasitic drugs (Vercruysse et al., 2011). It is therefore essential to understand the underlying mechanisms of drug resistance and find new drugs to circumvent it.
Praziquantel has been used for over 20 years to treat a variety of human trematode infections. Its precise mechanism of action has not been fully elucidated, however, there is experimental evidence that praziquantel acts by increasing the permeability of cell membranes towards calcium ions and/or by interfering with adenosine uptake (Jeziorski and Greenberg, 2006; Angelucci et al., 2007). Furthermore, it has been suggested that praziquantel reduces GSH concentrations, making the parasite more susceptible to the host immune response (Ribeiro et al., 1998). Interestingly, exposure to sub-lethal concentrations of praziquantel shows that schistosomes undergo a transcriptomic response similar to that observed during oxidative stress (Aragon et al., 2009).
Molecular structures of chemotherapeutics which are used to treat infectious disease by generating directly or indirectly high levels reactive oxygen species.
Reliance on a single drug for mass treatment is risky. Therefore, anti-schistosomiasis drug development is on the way to identify new compounds with different modes of action. Recently it was demonstrated that artemisinin-based compounds (e.g. artemether, figure 2) are active against immature stages of schistosomes. Although a number of potential drug targets have been proposed, the mode of action remains ambiguous (O´Neill et al., 2010). It is thought that the primary activator of the drug is an iron source. Therefore, interaction with heme in the worm gut has been suggested, leading to the formation of an unstable species that generates ROS and thus kills the worm (Utzinger et al., 2001). Since artemisinins are critically important for malaria chemotherapy, they are not available for MDA.
Schistosomes seem to be poorly adapted to cope with oxidative stress. This is surprising, since they have to deal with host-immune and self-generated ROS and, furthermore, with ROS generated during the consumption of host haemoglobin (Huang et al., 2012).The highly restricted antioxidant network has been widely accepted as an excellent drug target for schistosomes and other platyhelminths, since it is unique and differs significantly from the human host. Interestingly, the parasites have merged the Trx- and GSH-system using a hybrid enzyme, the thioredoxin-glutathione reductase (TGR) (Salinas et al., 2004, Huang et al., 2012). Using RNA interference, the TGR was found to be essential for parasite survival (Kuntz et al., 2007). TGR was indicated to be the main target of schistosomicidal drugs used in the past (antimonyl potassium tartrate and oltipraz) and of the anti-arthritic drug auranofin (Fig. 2), with a significant worm reduction observed in infected mice (Kuntz et al., 2007; Angelucci et al., 2009). A quantitative high-throughput screen identified highly potent lead compounds against the Schistosoma TGR (Simeonov et al., 2008), with low inhibitory constants being found with derivatives of phosphinic amides, isoxazolones and the oxadiazole-2-oxide chemotype (Furoxan) (Fig. 2) (Huang et al., 2012).
Preventive chemotherapy is the mainstay in the control of human soil-transmitted helminthiasis (STH). STH is primarily caused by the nematodes
Filarial parasites are classified according to the habitat of the adult worms in the vertebral host, with the cutaneous (
Diethylcarbamazine (DEC) is still the mainstay for the treatment of lymphatic filariasis and first choice of therapy of loiasis. Surprisingly, its molecular mechanism of action is still not completely understood. Since pharmacologically relevant concentrations of DEC do not have an effect on microfilariae in culture, its mode of action must involve both the worm and its host. A possible involvement of host arachidonate- and NO-dependent pathways was observed (McGarry et al., 2005). Currently no verification of an influence on the redox biology of helminths is available.
It has been postulated that antioxidant enzymes, that defend against host-generated ROS, are of particular importance for long-lived tissue-dwelling parasites that are involved in chronic infections. Here, surface or secreted antioxidant enzymes are of great importance since they can directly neutralize ROS that pose real danger, thereby protecting surface membranes against peroxides. Secreted filarial antioxidant enzymes include SOD, GPx and Prx (Henkle-Dührsen and Kampkötter, 2001). Additionally to their antioxidant role, the Prx have recently been shown to contribute to the development of Th2-responses by altering the function of macrophages (Donnelly et al., 2008). Interestingly, GSH-dependent proteins have been observed that are capable of modifying the local environment via modulation of the immune response. Here the secretory GSTs from
As outlined above, GSH-dependent detoxification pathways defend against current drugs and also play a role in mediating resistance to anthelmintics. The antioxidant pathways also provide the parasite with a means to protect against ROS-attack by its host and/or vector. In the model nematode
The current bottle-neck for the treatment of parasitic diseases with chemotherapeutics is the increasing drug resistance which forces the continuous discovery and development of new antiparasitic drugs. There is an urgent need for novel chemotherapeutic targets. New drugs should be generated to specifically target the parasite with minimal (or no) toxicity to the human host. Therefore, good drug targets should be distinctly different from processes in the host, or ideally be absent in the latter. Targeting the peculiarities - which are absent in the host - is proposed as such a strategy. In this sense, the parasite-specific biosyntheses represent ideal drug targets; similar to the already exploited antifolate interference with the parasite’s dihydrofolate (vitamin B9) biosynthesis. There are a variety of reports about reactive compounds that have antiparasitic activity; however, not all of these are therapeutically viable drug-like molecules due to various limitations such as toxicity, low bioavailability, rapid inactivation under
In this chapter we have tried to give an outline of the present situation of redox-active antiparasitic molecules that target human infectious diseases. In future the mechanisms, evolutionarily developed by the parasite to circumvent the crucial presence of ROS, will open new avenues for the development of novel antiparasitic drugs that combat resistant human pathogens effectively.
The authors would like to thank FAPESP (Fundação de Amparo à Pesquisa do Estado de São Paulo) for financial support (Project No. 2009/54325-2 to CW). The support of the DFG (Deutsche Forschungsgemeinschaft, grant LI 793/5-0 to EL) is acknowledged.
Mankind has been exploiting wildlife since times immemorial for basic needs, but the recent commercialization of wildlife trade has decimated some of the species to the verge of extinction [1]. Illegal wildlife trade is one of the biggest threats to the environment and biodiversity. The growing volume of illegal trade in wildlife jeopardizes all the conservation efforts across the globe. Many species have become extinct due to the illegal wildlife trade and many have reached the verge of extinction. According to some estimates, the monetary values of illegal wildlife trade are estimated at around 53 billion USD, and it is globally the third largest illegal trade after illegal trade in narcotics and firearms [2, 3]. Further, some of the wildlife crime and trade have also been linked with other organized forms like funding of terrorist activities, according to the United States Senate Foreign Relations Committee 2009. Studies have revealed that exploitation of wildlife by hunting for trade and pet collection is the second greatest drivers, surpassed only by habitat destruction for the decline in the population of many endangered species, and is impacting mammals (33%), birds (30%) and amphibians (6%) [4]. This has raised a global concern to check illegal trade for conserving wildlife for the future generations of the world and to maintain the delicate ecological balance of the nature.
In this scenario, it becomes the need of the hour to develop wildlife forensics with the changing paradigms of wildlife crime. Some of the important techniques that have made a strong impact in the field of wildlife forensics are microscopy, DNA analysis and elemental analysis, especially the study of isotopes. The aspects of these techniques are discussed in the proceeding sections.
The spectrum of types of physical evidence in wildlife forensics is very wide and so are the techniques. Microscopy is one of the most useful tools in wildlife forensics, especially while dealing with hair evidence. Hair is one of the important physical evidence found in wildlife crime cases about mammals. Mammals form one of the largest groups of poached species and a large number of wildlife crime cases require identification of species from hair. The history of examination of hair for species identification can be traced back to the nineteenth century, but the first significant contributions in this field were the works of Hausman [5, 6, 7] in America. Numerous studies related to species characterization from hair reported in the first half of the last century [5, 6, 7, 8, 9, 10].
Microscopic hair characteristics have also been widely used in biological sciences for studying food habits, prey, predator relationships and mammals inhabiting a den or a tree [11, 12, 13]. In 1938, Mathiak produced a key to the identification of hairs of mammals of Southern Michigan [11]. In the same year, Williams produced a key to the identification of hairs of moles and shrews [14].
A key for the identification of Californian mammals from hair characteristics was published by Mayer [12]. The entire key was based on a consideration of dorsal guard hairs that had been taken from one small area of the pelage. In all, around 392 species and subspecies were considered. Thoroughly descriptive guides on microscopic hair characteristics of some important mammalian species in certain geographic regions have been worked out by several prominent workers. Guide on hair structure of some selected mammals of Ontario was provided by Adorjan and Kolenosky [15]. Similarly, a guide for species identification from the hair of some selected mammals of Australia was provided by Brunner and Coman [16]. Moore et al. [17] provided a guide for the identification of hair of some mammals of North America (Wyoming). Later guides on species identification from hair were provided by Appleyard [18] and Teerink [19]. Statistical evaluation of quantifiable hair characteristics was also reported. Sato et al. performed a statistical comparison of dog and cat guard hair using numerical morphology [20]. They were able to distinguish between species based on discriminant function analysis. Similarly, Sahajpal et al. used discriminant function analysis to characterize hair from four mongoose species of India, based on the banding pattern of the hair [21]. Sahajpal et al. further reported the guard hair characteristics of four Indian bear species and bovid species listed under Schedule I of Wildlife (Protection) Act 1972 of India [22, 23].
Scanning electron microscopy (SEM) also finds great use in the study of surface morphology of hair and has also been used by several investigators. Rollins and Phan et al. used SEM for the studies of scale patterns in the wool hairs of Ibex, Cashmere/Pashmina and Shahtoosh/Tibetan antelope wool [24, 25]. They were able to show the usefulness of scale patterns of wool fibers for species characterization. A scanning electron microscopy (SEM) study on the cuticular pattern of guard hair of Tibetan antelope (
It is apparent from the aforesaid facts that examination of hair can provide valuable information on species identification in wildlife forensics. For species characterization of hair, the following aspects are necessary to understand.
The general shape or profile of the hair has pertinent value in species identification from hair. The hair can be divided into root and shaft. Most of the mammal species have guard hair that flattens toward the distal (away from the skin) end. This flattened region is often referred to as the shield.
The outer layer of the mammalian hair is made up of scales and is called the cuticle. The layer is very thin and almost transparent. This layer can be considered analogous to the paint on the surface of a pencil. There are three parameters for describing the cuticle:
Shape of scale margin
Distance between external margins of scales
Scale pattern
There are further subclassifications that are beyond the scope of this chapter.
The thick solid layer under the cuticle is called the cortex of the hair. The thickness of the cortex varies across species, and for simple understanding, it can be considered as analogous to the wooden part of the pencil. The cortex is made up of dead cornified cells, packed on to a rigid and homogenous hyaline mass [8]. The pigments that impart a color to the hair are present in the cortex region. Though the cortical region does not have much importance in species identification, the pigment granules present in the cortex do find use in species characterization from hair.
The innermost core of the hair is called the medulla. It can be considered analogous to the graphite lead of the pencil. Medullae have been classified into four basic groups, unbroken, broken, ladder and miscellaneous, based on the general shape, arrangement of cells and air spaces [16, 27]. These four major groups can be further divided into more descriptive categories that cannot be covered in the current chapter.
As discussed in the Section 2.1, hair shows a significant variation in shape across its length. This variation gets very clearly revealed by the outline of their cross-sections. A cross-section of hair shall essentially be circular if the hair has a cylindrical shape. However, for complex shapes, the cross-sections are of very distinct shapes. The cross-section shape and their dimensions are of significance in species identification. For calculating the ratio of medulla and cortex concerning hair thickness, cross-sections are best suited. Cross-sections from the widest portion of the shield are most informative for species identification [19].
The microscopic hair examination also made use of certain indices that have a significant value in species characterization. The indices find valuable use in statistical analysis. Three indices are commonly used and they are defined as follows:
Scale Index: Ratio of the free proximo-distal length of the scale to the diameter of the hair shaft
Scale Count Index: Number of scales per unit (1 mm) length of the hair shaft
Medullary Index: Ratio of the medullary thickness to the hair thickness (diameter)
Hair samples need to be initially examined for their color, texture, thickness, etc. before microscopic examination. The thickness can be measured in microns using a oculometer on a light microscope.
The almost transparent and very thin layer of the cuticle cannot be appreciated under a transmitted light microscope by using a whole mount of hair. Only the cortex and medulla are visible in the whole mount. Therefore, to view the cuticular structure of hair, a “cast” of hair has to be made and viewed under a microscope. The suitable method is to prepare a cast of the hair. In the case of the hair “scale cast” method, a hair is placed on the surface of a suitable material such that the surface structure of the hair gets reproduced as a three-dimensional cast. This cast can be viewed under a light microscope to observe the cuticular structure of the hair. About 10–20% solution of gelatin in distilled water or 50% solution of polyvinyl acetate in distilled water is used for the preparation of scale casts [28]. A fine and uniform film of the casting media is made on a clean microscopic glass slide with the help of a glass rod or a flat brush in a single stroke along the length of the slide surface. The slide is then placed on a horizontal surface and hair samples are placed one by one on the slide with the help of tweezers. The casting media is allowed to dry for about 20–30 minutes and the hair are removed by plucking gently, leaving behind the three-dimensional cast of the hair surface, which can be used to study the scale patterns, margins and shapes. The cast is viewed under the microscope at a magnification of 100× to 400× depending upon the thickness of the hair. Figure 1 depicts the scale pattern of the Indian Bison (
The cuticle of Indian bison (
Scanning electron microscopy (SEM) is also a recommended method to study the cuticle of hair as it offers resolution much higher than light microscopy. In this method, the hair samples are initially coated with a thin film of gold or palladium under a very low pressure (10–6 Torr) to make the surface conducting. These hair samples coated with a very fine film of gold or palladium are then viewed under an electron microscope, with the help of an electron beam. The method also has added advantage of studying the elemental profile of the hair if the SEM is coupled with energy dispersive X-ray analysis (SEM-EDXA) or wavelength dispersive X-ray analysis (SEM-WDXA).
Medulla can be visualized in the whole mount of hair. However, it is not usually possible to observe the fine structural details of the medulla because of the air filled in vacuoles of the medulla. Hence, it appears as a dark central region when viewed under a microscope. For a proper appreciation of the fine structure of the medulla, the air vacuoles need to be infiltrated with a solvent like xylene. To achieve this, the hair samples are cut into small pieces (0.5 cm to 1.0 cm in length) with a razor blade and immersed in xylene (preferably overnight). These hairpieces after overnight treatment with xylene can be mounted directly on a glass slide in DPX or Canada balsam and viewed under a light microscope. Figure 2 depicts the Medulla of Serow (
Medulla of Serow (
The following four observations can be made:
The medulla type
Medulla pattern
Medulla thickness in microns (using oculometer)
Medullary index
The cross-sections of hair can be prepared by using a microtome. In case of nonavailability of microtome, a simple yet reliable method may be used [21]. This method requires a straw pipe, mounting wax and a razor blade for preparing cross-sections. Few hairs were inserted into a straw pipe, keeping them as straight as possible. Maintaining the vertical position of the hair, molten wax is slowly and carefully sucked into the straw. Once the molten wax rises past the hair samples, the straw pipe is constricted to prevent the molten wax from running down. The wax is allowed to solidify and the straw pipe is cut open to remove the wax stubs with embedded hair. These stubs with hair embedded in a vertical plane can be used for cutting fine cross-sections with a razor blade. The cut cross-sections are placed in a microscopic glass slide and a drop of xylene is added to remove the wax. These can be viewed under a light microscope at a magnification of 100× to 1000× depending upon the thickness of the hair. Figure 3 depicts the cross-section of the hair takin (
Cross-section of hair of takin (
The following parameters may be observed:
Cross-section outline
Medulla outline and configuration
Pigment distribution in the cortex
Examination of hair by considering these parameters usually helps to narrow down up to genus and species level. In some species like Tibetan antelope (
The cuticle of Tibetan antelope (
Sometimes, hair samples may not be in good shape, or may not be in an appropriate number, or may not be available at all. In such cases, it is worthwhile to use DNA-based techniques for species identification. The DNA-based methods are discussed in the next section.
In the past 2–3 decades, conservation genetics has evolved as an important tool to resolve problems faced in species conservation. It has wide applications in molecular ecology, population genetics, molecular phylogenetics, taxonomy and phylogeography [29].
A recognized field of conservation genetics, now drawing growing attention, is the advancement of analytical methods to offer strong DNA-based evidence to support conservation law enforcement, which is commonly known as “wildlife DNA forensics.” Wildlife forensics is related to the identification of confiscated material to ascertain the species, individual identity or relationship, and source population of the sample. However, wildlife forensics has its challenges. Despite the implementation of national and international laws to protect degrading habitat, protect biological species diversity and secure long-term survival of species, DNA forensics has become a main probing tool to curb wildlife crime [30].
In the past decades, molecular techniques have evolved rapidly allowing forensic researchers to extract genomic DNA from small remains or quantity of biological samples left at the scene of a crime and to establish a connection with the wildlife species and the offender. Forensic scientists have utilized this methodology to monitor the illegal trade of ivory [31, 32, 33] and to detect the source population of whale meat confiscated from Japanese markets [34] and Bengal tiger body parts [35]. Wildlife DNA forensics has been proven to be powerful especially in remote wild areas and the marine environment where poaching of protected or threatened species is tough to detect [36]. This portion of the chapter introduces different methods used in wildlife DNA forensics.
The genetic-based analysis is commonly used in wildlife forensics to identify the species from a confiscated item. Species identification is useful in illegal poaching cases to examine the trace amount of evidence from the possession of a suspect or scene of crime [37]. It has also been proven useful in detecting species from shark fins [38, 39], products generally used in wildlife trades such as traditional Chinese medicines (TCMs [40, 41, 42], hair [43] decorative items such as ivory idol [44] and burnt samples [45] where morphological identification is not possible or reliable.
Species identification is based on genetic markers that exhibit variation in DNA sequence among species, but are highly conserved or similar within a species [30]. Mitochondrial DNA (mtDNA) is generally preferred as a genetic marker over nuclear DNA (nDNA) for species identification as it is easier to extract from highly degraded and processed tissues or samples. This is because of the presence of multiple copies of mtDNA per cell compared to a single copy of nuclear DNA [46, 47]. Besides, universal mtDNA primers can be utilized to amplify the informative sequence of mtDNA across taxa that are less time-consuming in method development [48]. Polymerase chain reaction (PCR) is especially used for gene amplification [49].
In animals, mitochondrial cytochrome b (Cyt b) and cytochrome oxidase 1 (CO1) genes are commonly used as universal mtDNA markers for species identification [50, 51, 52, 53, 54, 55, 56, 57, 58]. The Cyt b gene is a useful mtDNA marker for the identification of several vertebrate species from illegal trade items including seals [59], snakes [60], tigers [32, 56, 61, 62, 63, 64], sharks [52], turtles [64] and birds [65].
Sequencing of a fragment (600 bp) of the CO1 gene is highly informative and has been recommended as the inexpensive, fast and efficient approach to characterize species. Researchers around the world are making efforts to utilize the CO1 gene to catalog the entire vertebrate biodiversity on earth (www.barcodinglife.org) [47]. Furthermore, pyrosequencing is another method of DNA sequencing based on “sequencing by synthesis” that facilitates further rapid screening of DNA samples compared to methods used in conventional DNA sequencing [61]. Pyrosequencing can sequence only short fragments (50–500 bp) of DNA, which can restrict its use in DNA forensics unless we target very informative and highly variable regions of a gene [61]. Pyrosequencing has been used to identify twenty-eight European mammal species using very short fragments of 12S rRNA (17–18 bases) and 16S rRNA (15–25 bases) gene regions of mtDNA [66].
However, DNA nucleotide sequencing is a key method followed by comparing sequenced DNA fragments with reference DNA sequences of different species. The similarity or sequence homology between the unknown and reference sequences facilitates to ascertain the species of origin. Moreover, the International Society for Forensic Genetics (ISFG) has approved and validated the use of the DNA sequencing method [67, 68] and validated this method as a method for application in the detection of forensic casework [69]. Furthermore, the important advantage of DNA sequencing is that universal PCR primers can be used to amplify the DNA from unknown or random forensic case samples [56].
Species of unknown samples is assigned by analyzing and calculating the sequence homology with the reference DNA sequences [50, 70] available on DDBJ/EMBL-EBI/NCBI database collaboration (The International Nucleotide Sequence Database Collaboration, www.insdc.org) and the Barcode of Life Data system (BOLD, boldsystems.org), which is the cloud-based data storage and analysis platform and the part of the CBOL (Consortium for the Barcoding of Life, www.barcodinglife.com).
Another method for identifying species is the construction of a phylogenetic tree. Such tree analysis helps understand the evolutionary relationship between unknown and the reference DNA sequences [56, 71, 72]. Phylogenetic trees allow identifying the reference species as likely source species if it is located closest to the unknown sample. Trees can be constructed using different methods such as neighbor-joining, maximum likelihood, Bayesian and maximum parsimony [73] and in wildlife forensics, there is no consensus over which method to use [74, 75].
Although methods that target single nucleotide polymorphisms (SNPs) other than whole DNA sequences confine their capacity to detect species, it enables researchers to analyze samples that contain multiple species, opposite to DNA sequencing using universal primers [30]. Identification of endangered species from traditional Chinese medicines that may contain plant and animal products has been successfully performed using allele-specific PCR primers and probes [63, 76, 77]. DNA sequencing–based species identification and SNP typing–based ability to examine mixed DNA of multiple species can be mixed [30]. Species-specific primers are used to sequence target species from mixed-species samples like TCMs. This tool has been used to ascertain the body parts of shark [39] and bear bile in TCMs [42].
The great concern to wildlife conservation is to ascertain the geographic origin of confiscated items to curtail illegal poaching within the country’s boundary and cross-border trafficking of wildlife derivates. In addition to species identification, it is necessary to trace the source population of individual forensic samples to implement wildlife protection laws and CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) regulations. Given this, genetic studies have been widely conducted to infer the source of origin of the poached items and can be used to identify marine stocks harvested illegally. However, few published studies are using these methods in forensic investigations.
Ascertaining geographic origin or source population is based on the ability to assign an unknown or a confiscated sample to its population of origin, counting on the availability of population genetic data from several areas and requiring an adequate genetic differentiation of the source population from other populations. Despite these restrictions, a large number of recent conservation researchers are now emphasizing the urgent need for enforcement methods to efficiently ascertain the geographic origin of samples [30].
In divergent populations, phylogeographic analyses can determine the geographic distribution of the genealogical lineages in which unique haplotypes of mtDNA are correlated with large geographic areas [30, 71]. Generally, the D-loop or hypervariable control region of mtDNA is applied as a genetic marker in ascertaining geographic origin based on haplotypes (individual sequence types of the control region) related to specific populations [30]. This method has been successfully applied to identify the large geographic origins of the Chinese sika deer (
Furthermore, populations with a subtle genetic variation or with insufficient variation in mtDNA can be identified using population assignment methods by employing nuclear genetic markers that exhibit differences among regions more efficiently than phylogeographic analyses. Population assignment methods are useful in assigning individuals to their source population after testing with all populations within a large geographic area or landscape complex [35]. Therefore, a strategy to first test individuals with mtDNA haplotypes to identify the wide geographic origin and to second detect a particular source population in its large geographic area where other populations exist can be followed [35].
The frequency of the alleles at hypervariable nuclear DNA (nDNA) genetic marker observed in a natural population can be utilized to characterize population genetic structure and to estimate the probability of an individual or a sample belonging to its putative population of origin. Similarly, a forensic sample is assigned to its probable source population or geographic area [30, 35, 80, 81, 82, 83]. The most commonly used hypervariable nDNA genetic markers for population assignment are microsatellites (Box 1) and AFLPs (Box 1) [47].
Commonly used techniques in wildlife DNA forensic [30].
1. DNA sequencing
DNA sequencing detects each nucleotide base within a target region of a specific genetic DNA marker. For species identification, DNA sequencing of a fragment (nearly 500 bases) is most commonly utilized to offer species-specific DNA sequence. DNA sequencing facilitates the development of single nucleotide polymorphisms (SNPs), Indels and microsatellites with specific regions of DNA sequence variation.
2. SNP typing
Generally, single bp variations in the DNA sequence at a genetic marker causes differences among species, termed as single nucleotide polymorphisms (SNPs). SNP typing, also known as genotyping, investigates the specific regions with variation in the DNA sequence. SNP typing facilitates cheaper and faster tests that do not need long segments of high- or good-quality DNA but provides less information compared to conventional DNA sequencing. Three most commonly used SNP typing methods in forensics are given below:
2.1 PCR-RFLP
PCR-RFLP (Restriction Fragment Length Polymorphism) utilizes restriction endonuclease enzymes that recognize specific cleavage sites to cut DNA. The resulting nicked fragments are analyzed using agarose gel electrophoresis.
2.2 Allele-specific PCR
PCR primers, employed in the amplification of genetic markers, can be designed for highly conserved DNA regions or fragments (universal primers) or areas where highly variable DNA sequences occur between any species or populations (allele-specific primer).
2.3 Allele-specific probes
In this approach, a combination of universal primers and a specific probe that attaches to a specific variant of DNA sequence is used. Such probes allow detecting the base situated at SNP site.
3. Microsatellite DNA genotyping
Microsatellites or short tandem repeats (STRs) or simple sequence repeats (SSRs) are tandem stretches of 1-6 bp long-short nucleotide sequence motifs (e.g., ATATATAT) that occur randomly and are widely distributed in all eukaryotic genomes [84, 85, 86]. Variations in the number of repeat units lead to the difference in the size of both DNA fragments (alleles) that can be resolved and visualized on gel electrophoresis [86, 87]. These polymorphic loci are generally used in genetics and forensics studies. These are codominant markers.
4. AFLP (Amplified Fragment Length Polymorphism)
AFLPs are dominant DNA markers in which an allele is present or absent in an individual. AFLP locus cannot determine the heterozygosity of any individual. Therefore, in contrast to the codominant microsatellite DNA markers, AFLPs have less resolving power to assign an individual to its population of origin [88]; generally, at least 50 AFLP loci and 8 microsatellite loci are recommended to conduct population assignment tests [89]. Furthermore, in comparison to microsatellites, high-quality DNA requirement and greater genotyping errors of AFLPs have proven them to be less versatile [88, 90].
Generally, a panel of highly polymorphic microsatellite loci is first selected and used to generate the genetic profile of a test sample or forensic specimen [91, 92]. This profile is assigned to a particular population by matching and comparing its observed alleles with the observed allele frequency in the population. There are several analytical methods available to perform assignment tests [83] and freely available statistical software packages [93]. Population assignment tests are highly meticulous when the genetic database of all candidate populations has been developed, population or species boundaries are distinct, sampling is random and all population represents Hardy–Weinberg equilibrium (random mating, no inbreeding, the balance between mutation and genetic drift). Conversely, these assumptions are not feasible for several populations, for instance, when population boundaries are not evident or the genetic variations between populations are minimal or low, and populations are small [94]. Where populations are genetically widely distributed, stable isotopes (nongenetic substitutes) may be more appropriate to ascertain the origin of the samples [95].
For the last three decades, individual identification of forensic specimens based on a unique DNA profile has revolutionized human forensic studies [30]. This technique can be employed to detect the number of individuals used in the commercial market or trade, even from highly processed or powdered products [47]. Baker et al. [96] used a partial fragment of the mtDNA control region (464 bp) and 8 microsatellite loci to identify the minimum number of individual North Pacific minke whales (
Highly polymorphic SNP or microsatellite markers are used to generate a DNA profile with a series of gene variants or alleles (Box 1). The inclusion of more number of loci or markers reduces the chance that two different individuals will have the same DNA profile. Samples are identified to be from the same or different individuals based on the same or different DNA profiles, respectively. It is important to calculate the probability of identity that two individuals may share the same DNA profile [30].
In Canada, a database of DNA profiles has been established and is commonly used to support forensic investigations of the poaching cases of black bear (
Furthermore, the ability to validate familial relatedness is also a major application of wildlife DNA forensics. In a forensic investigation, the focus of establishing levels of relatedness lies predominantly on the discrimination of wild-caught animals from captive-bred [30]. Genetic or DNA markers are inherited from both parents from one generation to the next that allows using DNA profiles to validate parent–offspring relationships. Microsatellite loci–based DNA profile database is used in Australia and Europe to authenticate captive bird breeding, whereas parentage DNA analysis is applied to verify caviar of captive sturgeon (
Apart from species identification from unknown wildlife sample, quite often it also becomes imperative to identify the geographic origin of the sample. In addition to the DNA-based methods for ascertaining the possible geographical origin of samples, the study of the elemental profiles of samples is also a reliable means for predicting the geographic origin of the samples. This also becomes important when a particular species is protected in one area and not in another, and further when animals from the wild are captured and traded as captive-bred [98]. Among the elemental analysis techniques, a comparison of the ratios of different isotopes using methods such as inductively coupled plasma mass spectrometry (ICP-MS) and isotope ratio mass spectrometry (IRMS) is an established method for predicting the geographic origin of wildlife samples. Variations in the concentration of elements and ratios of the isotopes have been used widely to ascertain the geographical origins of the African Rhinoceros horn [99, 100, 101]. Further, Amin et al. used mass spectrometry to study carbon and nitrogen isotopes and laser ablation–inductively coupled plasma–mass spectrometry (LA-ICP-MS) to measure the relative abundance of isotopes of various elements to ascertain the geographic origin of African Rhinoceros horns [102]. Recently, Alexander et al. used stable isotope analyses to monitor illegally traded African gray parrots [103].
Isotopes are atoms of the same element that have a different number of neutrons in their nucleus; hence, they have the same atomic number but their atomic mass is different. Isotopes can be two types, that is, radioactive isotopes or stable isotopes.
Radioactive isotopes have an unstable nucleus that tends to attain a stable form by emitting radiation. Hence, these isotopes are called radioactive isotopes. The process is also radioactive decay, and during the process, particles and photons are emitted. Carbon-14 (14c), which is widely used in the dating of archeological samples and is a good example of a radioactive isotope. It has a nucleus with six protons and eight neutrons. With time, it decays into the nonradioactive nitrogen-14.
Stable isotopes have stable nuclei and hence do not exhibit radioactivity; that is, they do not undergo radioactive decay. Any element that has isotopes will have a lighter isotope (with a lesser number of neutrons) and a heavier isotope (with a higher number of neutrons). Further, the relative abundance of these isotopes with respect to each other varies significantly with geographical location. Hence, for an unknown sample, if the relative abundance of isotopes of a particular element is determined, it becomes possible to predict the geographical origin of a sample, based on the relative abundance of the isotopes. The elements and isotopes thereof enter the food chain and hence get incorporated into the tissues of living organisms. Further, the elements along with their isotopes remain in the remains of the organisms. As species are distributed according to ecozones and geography, their elemental profile including the relative abundance of stable isotopes is bound to vary with the geographical origins. This is used in wildlife forensics for predicting the geographical origins of wildlife samples with analysis of stable isotopes and elemental profiles. The isotopes most commonly used in forensic science for this purpose are generally H, C, N and O [98, 104].
Inductively coupled plasma mass spectrometry (ICP-MS) is a highly sensitive technique of elemental analysis with a capability to detect metals and nonmetals and very low concentrations. Further, it has the capability of detecting isotopes of an element in a given sample.
Isotope-ratio mass spectrometry (IRMS) is a specialization form of mass spectrometry, in which mass spectrometric methods are used to determine the relative abundance of isotopes in a sample.
Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) is a highly sensitive elemental and isotopic analysis method in which analysis can be directly performed on solid samples. It used a process called laser ablation in which a laser beam is focused on the surface to generate fine particles. These particles are then transported to an ICP-MS for digestion and ionization and subsequent detection of elements and isotopes.
Elaboration of these techniques shall be beyond the scope of this chapter. The usefulness of the technique has been demonstrated by several workers in this field and the technology has great potential in identifying the geographic origin of wildlife samples.
As discussed earlier, the spectrum of wildlife forensics is very wide, and to address different queries of investigation, the use of different techniques may be required. Some of these techniques, even though readily available, still may require standardization with respect to wildlife crime samples. The matters get further complicated when the evidence material is very limited; hence, it becomes imperative to have a precise idea of what technique(s) should be employed for the purpose. In this chapter, we have covered some important techniques that may be useful for dealing with wildlife crime cases. However, to get a more refined and working knowledge of the techniques, referring to detailed texts is advised.
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