RT-PCR amplification primers.
\r\n\t
",isbn:"978-1-83969-663-3",printIsbn:"978-1-83969-662-6",pdfIsbn:"978-1-83969-664-0",doi:null,price:0,priceEur:0,priceUsd:0,slug:null,numberOfPages:0,isOpenForSubmission:!0,hash:"a62aa90a2efdd776add46a44462341e2",bookSignature:"MSc. Angello Retamal-Díaz",publishedDate:null,coverURL:"https://cdn.intechopen.com/books/images_new/11017.jpg",keywords:"MicroRNA, Primary Infection, Latency, Reactivation, Innate Immunity, Adaptive Immunity, CNS Inflammation, Vaccine, Drug Rational Design, Antiviral Resistant Viruses, HSV-1 Vectors, Gene Therapy",numberOfDownloads:null,numberOfWosCitations:0,numberOfCrossrefCitations:null,numberOfDimensionsCitations:null,numberOfTotalCitations:null,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"March 9th 2021",dateEndSecondStepPublish:"April 6th 2021",dateEndThirdStepPublish:"June 5th 2021",dateEndFourthStepPublish:"August 24th 2021",dateEndFifthStepPublish:"October 23rd 2021",remainingDaysToSecondStep:"13 days",secondStepPassed:!0,currentStepOfPublishingProcess:3,editedByType:null,kuFlag:!1,biosketch:"Dr. Retamal-Díaz is a young scientist working in the field of virus-host interaction and has received the Best Doctoral Thesis Award 2019 at the Chilean Society for Microbiology (SOMICH) about Herpes simplex virus and Dendritic cells. He is an activist for scientific outreach and technology assessment of public policies. He is a member of the American Society for Microbiology.",coeditorOneBiosketch:null,coeditorTwoBiosketch:null,coeditorThreeBiosketch:null,coeditorFourBiosketch:null,coeditorFiveBiosketch:null,editors:[{id:"183530",title:"MSc.",name:"Angello",middleName:null,surname:"Retamal-Díaz",slug:"angello-retamal-diaz",fullName:"Angello Retamal-Díaz",profilePictureURL:"https://mts.intechopen.com/storage/users/183530/images/system/183530.jpg",biography:'Dr. Angello Retamal-Díaz is a Biochemist from the Universidad de Concepción, Chile, and a Ph.D. in Molecular Genetics and Microbiology from the Pontificia Universidad Católica de Chile. After his PhD, he performed post-doctorate, at the Millennium Institute on Immunology and Immunotherapy (Federation of Clinical Immunology Societies, FOCiS Center of Excellence) in association with the Health Command of the Chilean Army.\nHe is currently Associated Professor in the Department of Biotechnology, Faculty of Ocean Sciences and Biological Sources, Universidad de Antofagasta, Chile. Dr. Retamal is a young researcher, he has won the prize for the best doctoral thesis at the Chilean Society for Microbiology. He has also been awarded by several prestigious institutions in Chile, as the Ministry of Economy, Chilean Government, and Daily “El Sur” gave him the award to "Leaders 2009: 50 Young people for the bicentennial". \nHis research focuses on the host-pathogen interaction, particularly at molecular level, in the immune response against infectious agents, as well as vaccine and antiviral design. He has published articles in the Microbiology, Virology and Immunology fields and has contributed to the community has given numerous outreach conferences and has published the first Technology Assessment document from the Millennium Scientific Initiative to the Chilean Congress.',institutionString:"University of Antofagasta",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"1",totalChapterViews:"0",totalEditedBooks:"0",institution:{name:"University of Antofagasta",institutionURL:null,country:{name:"Chile"}}}],coeditorOne:null,coeditorTwo:null,coeditorThree:null,coeditorFour:null,coeditorFive:null,topics:[{id:"13",title:"Immunology and Microbiology",slug:"immunology-and-microbiology"}],chapters:null,productType:{id:"1",title:"Edited Volume",chapterContentType:"chapter",authoredCaption:"Edited by"},personalPublishingAssistant:{id:"297737",firstName:"Mateo",lastName:"Pulko",middleName:null,title:"Mr.",imageUrl:"https://mts.intechopen.com/storage/users/297737/images/8492_n.png",email:"mateo.p@intechopen.com",biography:"As an Author Service Manager my responsibilities include monitoring and facilitating all publishing activities for authors and editors. From chapter submission and review, to approval and revision, copyediting and design, until final publication, I work closely with authors and editors to ensure a simple and easy publishing process. I maintain constant and effective communication with authors, editors and reviewers, which allows for a level of personal support that enables contributors to fully commit and concentrate on the chapters they are writing, editing, or reviewing. I assist authors in the preparation of their full chapter submissions and track important deadlines and ensure they are met. I help to coordinate internal processes such as linguistic review, and monitor the technical aspects of the process. As an ASM I am also involved in the acquisition of editors. Whether that be identifying an exceptional author and proposing an editorship collaboration, or contacting researchers who would like the opportunity to work with IntechOpen, I establish and help manage author and editor acquisition and contact."}},relatedBooks:[{type:"book",id:"1591",title:"Infrared Spectroscopy",subtitle:"Materials Science, Engineering and Technology",isOpenForSubmission:!1,hash:"99b4b7b71a8caeb693ed762b40b017f4",slug:"infrared-spectroscopy-materials-science-engineering-and-technology",bookSignature:"Theophile Theophanides",coverURL:"https://cdn.intechopen.com/books/images_new/1591.jpg",editedByType:"Edited by",editors:[{id:"37194",title:"Dr.",name:"Theophanides",surname:"Theophile",slug:"theophanides-theophile",fullName:"Theophanides Theophile"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"3161",title:"Frontiers in Guided Wave Optics and Optoelectronics",subtitle:null,isOpenForSubmission:!1,hash:"deb44e9c99f82bbce1083abea743146c",slug:"frontiers-in-guided-wave-optics-and-optoelectronics",bookSignature:"Bishnu Pal",coverURL:"https://cdn.intechopen.com/books/images_new/3161.jpg",editedByType:"Edited by",editors:[{id:"4782",title:"Prof.",name:"Bishnu",surname:"Pal",slug:"bishnu-pal",fullName:"Bishnu Pal"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"3092",title:"Anopheles mosquitoes",subtitle:"New insights into malaria vectors",isOpenForSubmission:!1,hash:"c9e622485316d5e296288bf24d2b0d64",slug:"anopheles-mosquitoes-new-insights-into-malaria-vectors",bookSignature:"Sylvie Manguin",coverURL:"https://cdn.intechopen.com/books/images_new/3092.jpg",editedByType:"Edited by",editors:[{id:"50017",title:"Prof.",name:"Sylvie",surname:"Manguin",slug:"sylvie-manguin",fullName:"Sylvie Manguin"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"371",title:"Abiotic Stress in Plants",subtitle:"Mechanisms and Adaptations",isOpenForSubmission:!1,hash:"588466f487e307619849d72389178a74",slug:"abiotic-stress-in-plants-mechanisms-and-adaptations",bookSignature:"Arun Shanker and B. Venkateswarlu",coverURL:"https://cdn.intechopen.com/books/images_new/371.jpg",editedByType:"Edited by",editors:[{id:"58592",title:"Dr.",name:"Arun",surname:"Shanker",slug:"arun-shanker",fullName:"Arun Shanker"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"72",title:"Ionic Liquids",subtitle:"Theory, Properties, New Approaches",isOpenForSubmission:!1,hash:"d94ffa3cfa10505e3b1d676d46fcd3f5",slug:"ionic-liquids-theory-properties-new-approaches",bookSignature:"Alexander Kokorin",coverURL:"https://cdn.intechopen.com/books/images_new/72.jpg",editedByType:"Edited by",editors:[{id:"19816",title:"Prof.",name:"Alexander",surname:"Kokorin",slug:"alexander-kokorin",fullName:"Alexander Kokorin"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"314",title:"Regenerative Medicine and Tissue Engineering",subtitle:"Cells and Biomaterials",isOpenForSubmission:!1,hash:"bb67e80e480c86bb8315458012d65686",slug:"regenerative-medicine-and-tissue-engineering-cells-and-biomaterials",bookSignature:"Daniel Eberli",coverURL:"https://cdn.intechopen.com/books/images_new/314.jpg",editedByType:"Edited by",editors:[{id:"6495",title:"Dr.",name:"Daniel",surname:"Eberli",slug:"daniel-eberli",fullName:"Daniel Eberli"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"57",title:"Physics and Applications of Graphene",subtitle:"Experiments",isOpenForSubmission:!1,hash:"0e6622a71cf4f02f45bfdd5691e1189a",slug:"physics-and-applications-of-graphene-experiments",bookSignature:"Sergey Mikhailov",coverURL:"https://cdn.intechopen.com/books/images_new/57.jpg",editedByType:"Edited by",editors:[{id:"16042",title:"Dr.",name:"Sergey",surname:"Mikhailov",slug:"sergey-mikhailov",fullName:"Sergey Mikhailov"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"1373",title:"Ionic Liquids",subtitle:"Applications and Perspectives",isOpenForSubmission:!1,hash:"5e9ae5ae9167cde4b344e499a792c41c",slug:"ionic-liquids-applications-and-perspectives",bookSignature:"Alexander Kokorin",coverURL:"https://cdn.intechopen.com/books/images_new/1373.jpg",editedByType:"Edited by",editors:[{id:"19816",title:"Prof.",name:"Alexander",surname:"Kokorin",slug:"alexander-kokorin",fullName:"Alexander Kokorin"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"2270",title:"Fourier Transform",subtitle:"Materials Analysis",isOpenForSubmission:!1,hash:"5e094b066da527193e878e160b4772af",slug:"fourier-transform-materials-analysis",bookSignature:"Salih Mohammed Salih",coverURL:"https://cdn.intechopen.com/books/images_new/2270.jpg",editedByType:"Edited by",editors:[{id:"111691",title:"Dr.Ing.",name:"Salih",surname:"Salih",slug:"salih-salih",fullName:"Salih Salih"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}},{type:"book",id:"872",title:"Organic Pollutants Ten Years After the Stockholm Convention",subtitle:"Environmental and Analytical Update",isOpenForSubmission:!1,hash:"f01dc7077e1d23f3d8f5454985cafa0a",slug:"organic-pollutants-ten-years-after-the-stockholm-convention-environmental-and-analytical-update",bookSignature:"Tomasz Puzyn and Aleksandra Mostrag-Szlichtyng",coverURL:"https://cdn.intechopen.com/books/images_new/872.jpg",editedByType:"Edited by",editors:[{id:"84887",title:"Dr.",name:"Tomasz",surname:"Puzyn",slug:"tomasz-puzyn",fullName:"Tomasz Puzyn"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}}]},chapter:{item:{type:"chapter",id:"64481",title:"Influence of Sewage Sludge Biochar on the Microbial Environment, Chinese Cabbage Growth, and Heavy Metals Availability of Soil",doi:"10.5772/intechopen.82091",slug:"influence-of-sewage-sludge-biochar-on-the-microbial-environment-chinese-cabbage-growth-and-heavy-met",body:'\nBecause of rapid economic development, more than 30 million tons of wet sewage sludge (SS) are produced in China every year [1]. SS contains lots of organic pollutants, microorganisms, eggs of parasitic organisms, and heavy metals (HMs), which makes it an obvious threat to ecological environment [2]. Conventional disposal technologies such as landfill, incineration, and agricultural application encounter many environmental problems; so, they cannot be widely used [3]. Especially, the direct application of SS in agricultural production is strictly banned due to the problem of pathogens and contaminants [4].
\nThe pyrolysis of SS is a technology in which SS is heated under zero or low-oxygen condition to produce sewage sludge biochar (SSB) and pyrolysis oil and gas. After conversion into SSB, all the pathogens and organic pollutants in SS are eliminated and the volume of SS is significantly reduced [5]. Also, the oil and gas produced by pyrolysis can save the input of external energy as supplemental fuel [6]. Apart from the applications mentioned above, SSB has numerous special advantages in improving soil quality and crop growth. First of all, biochar possesses a porous structure that can influence the soil’s structure, porosity, particle size distribution, and density, which contributes to increasing the soil water-holding capacity and microbial activity [7]. Furthermore, biochar is alkaline and can improve the pH of soil [8]. Finally, biochar is rich in plenty of nutrients such as nitrogen, phosphorus, potassium, etc., exhibiting a positive effect on plant growth [9]. Song et al. [10] studied the influence of pyrolysis temperature and proportion of SSB on garlic yield and HMs accumulation and found that the SSB produced at 450°C and its addition at 25% could improve the yield of garlic well and inhibit HMs accumulation in garlic. Khan et al. [4] investigated the effects of SSB on rice yield, HMs bioaccumulation, and greenhouse gas emission and found that SSB amendments increased the pH, total nitrogen, organic carbon, and available nutrients of soil and crop yield, and decreased HMs bioavailability and N2O emission. In addition, there are a large amount of studies on the influence of SSB on plant growth and HMs migration that have proved the positive effects of biochar addition [11, 12, 13].
\nBased on the pilot-scale plant on pyrolysis of SS with capacity 30 t/d in Xiamen, and our previous studies, it was found that the HMs in SS were converted into a more stable state after hydrothermal pretreatment combined with pyrolysis and the obtained SSB could be used to prepare ceramsite [14, 15, 16]. However, the study of the influence of SSB from the pyrolysis of hydrothermally treated SS on the microbial environment of soil during planting is still indispensable. On the one hand, the soil microorganisms are involved in many biochemical processes, including the degradation and conversion of organic matter, the mineralization and immobilization of nutrients, and the formation and stabilization of soil aggregates [17]. On the other hand, the soil microorganisms are also a repository of soil nutrients and an important nutrition source for plant growth [18]. In this study, we chose the common and easy-to-grow Chinese cabbage as the planting crop to investigate the influence of SSB from the pyrolysis of hydrothermally treated SS on the physical and chemical properties and microbial environment of soil before and after planting. Furthermore, the growth status of Chinese cabbage and HMs availability were also studied.
\nThe used soil was collected from a farmland near an abandoned mine in Longyan, Fujian Province, China. The soil was sieved and homogenized after collection. SS was obtained from a wastewater treatment plant in Xiamen, China. Then, the SS was disposed via hydrothermal treatment at 160°C for 1 hour, and followed by filtration and pyrolysis by a rotary furnace at 500°C for 3 hours to obtain SSB in the pilot-scale plant in Xiamen, Fujian Province [19]. The high-quality and early raping NO.5 seed of Chinese cabbage was chosen as the testing plant.
\nThe Chinese cabbage pot experiment was carried out in a greenhouse located in Xiamen, Fujian province, China (24.36 N–118.3 E) and the height and diameter of the polyethylene pot were 15 and 20 cm, respectively. To investigate the influence of SSB on the properties of soil, Chinese cabbage growth, and HMs availability, SSB was added with an SSB-to-soil mass ratio of 1:9 (10% SSB) in pot and the pure soil served as a control group. The total weight of soil or treated soil in each pot was 5.0 kg. Every pot experiment was assessed by four replicates. After seeding, each pot was treated with watering regularly and thinned out to ensure that only one Chinese cabbage grows. When the pot experiment finished (about 55 days), the soil and Chinese cabbage were collected to conduct relative tests, respectively.
\nThe pH was measured according to the agricultural trade standard of China (NY/T 1377-2007) and the solution was analyzed with a UB-7 pH meter (Ultra Basic, US). Electrical conductivity (EC) was measured according to the national environmental protection standard of China (HJ 802-2016) and the solution was analyzed with a Cond 3110 conductometer (Teltracon 325, Germany). Surface area was calculated by the Brunauer-Emmett-Teller (BET) method after testing using nitrogen adsorption/desorption isotherms with an apparatus (TriStar II 3020 V1.01, USA). Elemental analysis was conducted by an elemental analyzer (Vario MAX, Germany). The concentrations of nutrient elements were analyzed by digestion in an acid mixture [15] and the solution was determined by ICP-OES (Optima 7000DV, USA). The concentrations of available HMs in the sample were measured by the DTPA extraction method [20] and the solution was determined by ICP-MS (Agilent 7500cx, USA). The surface functional group of SSB was analyzed by FTIR spectrometry (iS10, Thermo, USA) and the morphology of SSB was analyzed by scanning electron microscopy (SEM, S-4800, Hitachi, Japan).
\nThe dehydrogenase (DHA) activity in soil was measured by the triphenyltetrazolium chloride (TTC) spectrophotometric method [21]. The urease activity was measured by Nesslerization [22]. The molecular target genes of bacteria, fungi, ammonia-oxidizing archaea (AOA), and ammonia-oxidizing bacteria (AOB) were measured by quantitative real-time polymerase chain reaction (RT-PCR) analysis [23] and the information of primers is shown in Table 1. A standard curve was obtained by tenfold dilution of recombinant plasmid acquired in each molecular target gene of the above microorganisms and each sample was repeated three times. The SYBR® Premix Ex Taq™ kit from Bao Biological Engineering (Dalian, China) Co. Ltd. was used for analysis at Roche Lightcycler® 480 PCR. The quantitative PCR reaction system was 20 μL, including 1 μL of tenfold diluted DNA template, 10 μL of SYBR® Premix Ex Taq™, 0.2 μL (20 μM) of forward and reverse primers respectively, and 8.6 μL of sterilized distilled water. The procedure of PCR consisted of denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 55°C for 45 min, and extension at 72°C for 1 min, followed by 40 cycles of denaturation, annealing, and extension at 72°C for 10 min.
\nTarget gene | \nPrimer name | \nPrimer sequence (5′–3′) | \n
---|---|---|
Bacteria 16S rRNA | \n58F | \nCCTACGGGAGGCAGCAG ATTCCGCGGCTGCTGGCA | \n
517R | \n||
Fungi 18S iRNA | \nITS3 | \nGCATCGATGAAGAACGCAGC TCCTCCGCTTATTGATATGC | \n
ITS4 | \n||
AOA amoA | \nArch-amoAF | \nSTAATGGTCTGGCTTAGACG GCGGCCATCCATCTGTATGT | \n
Arch-amoAR | \n||
AOB amoA | \namoA-1F | \nGGGGTTTCTACTGGTGGT CCCCTCKGSAAAGCCTTCTTC | \n
amoA-2R | \n
RT-PCR amplification primers.
The physical and chemical properties of the original soil and SSB are listed in Table 2. SSB has higher pH, EC, and BET surface area compared with the soil, which shows that the addition of SSB can improve the physicochemical properties of soil, such as pH, salinity content, water retention, the adsorption of nutrient, and microbial population [24]. In particular, the change of pH in soil indicates the occurrence of some chemical and biological reactions. The contents of C, H, N, and S in biochar depend on the feedstock and pyrolysis condition. The H/C and C/N ratios represent the aromaticity of biochar and the capacity for organics to release inorganic N [10, 25]. In this study, the H/C ratio of SSB is lower (<0.1) than that of the soil, which suggests that SSB has higher aromaticity and can exist in the soil for many years [25]. However, the higher C/N ratio of SSB inhibits the release of inorganic N compared with the original soil. In addition, SSB contains higher concentrations of K, Na, P, and Ca compared with the soil, which indicates that the addition of SSB can increase the fertility of soil.
\nParameters | \nSoil | \nSSB | \n
---|---|---|
pH | \n5.32 ± 0.03 | \n10.00 ± 0.04 | \n
EC (μS/cm) | \n203.67 ± 2.22 | \n871.33 ± 3.78 | \n
Moisture (%) | \n0.26 ± 0.00 | \nNDa | \n
BET surface area (m2/g) | \n0.51 | \n13.05 | \n
Carbon (%) | \n3.08 ± 0.02 | \n7.84 ± 0.02 | \n
Hydrogen (%) | \n1.04 ± 0.03 | \n0.63 ± 0.03 | \n
Nitrogen (%) | \n0.26 ± 0.00 | \n0.34 ± 0.00 | \n
Sulfur (%) | \n3.96 ± 0.04 | \n3.82 ± 0.08 | \n
K (mg/g) | \n8.37 ± 0.05 | \n20.33 ± 0.06 | \n
Na (mg/g) | \n0.86 ± 0.01 | \n10.57 ± 0.05 | \n
P (mg/g) | \n1.51 ± 0.02 | \n7.28 ± 0.05 | \n
Ca (mg/g) | \n0.03 ± 0.00 | \n39.66 ± 0.11 | \n
Physical and chemical properties of soil and SSB.
ND, not detected.
The FTIR spectra of SSB is shown in Figure 1a. The identified bands are assigned to the stretching vibrations of hydroxyl functionalities (3446 cm−1), amide bond stretching (1637 cm−1), bending vibration of methyl group (1385 cm−1), carbon-oxygen single bond in phenol (1186 cm−1), and carbon-oxygen double bond (1050 cm−1) [10, 25, 26]. In addition, the stretching vibrations between 600 and 800 cm−1 can be related to the aromatic and heteroaromatic compounds, and the bands below 600 cm−1 can be attributed to the organic and inorganic halogen compounds [25]. The SEM micrograph of SSB is shown in Figure 1b. There are lots of lumps and holes in the SSB, and the size of holes is very large. These results indicate that the SSB with abundant functional groups and pore structure can also change the physical and chemical properties of soil and provide a survival shelter for microorganism [27].
\n(a) FTIR spectra and (b) SEM micrograph of SSB.
The effects of SSB addition on the pH and EC of soil are shown in Figure 2. The pH of the control soil increased remarkably after planting, which indicated that the acid organic matter in soil was decomposed during Chinese cabbage planting [28]. Also, the addition of SSB adjusted the pH of soil from acidic to neutral and the pH increased from 7.12 to 7.49 after planting. Figure 2b shows that the EC of the control soil increased slightly after cabbage planting, but it is just 382 μS/cm and close to the EC of the soil added with 10% SSB before planting. The EC of the soil with 10% SSB addition increased from 364 to 644 μS/cm after planting and the increase rate was 76.92%. When EC is lower than 500 μS/cm or higher than 2000 μS/cm, the phenomenon of lacking nutrient or seedling burning will occur during planting [29]. Therefore, adding SSB in soil could adjust the EC to a suitable range (500–2000 μS/cm) for plant growth. The above results are because a number of alkaline ions such as hydrocarbon anion, bicarbonate, carbonate, and phosphate in SSB were released during planting and increased the pH and EC of soil effectively [30, 31].
\nEffects of SSB addition on the pH (a) and EC (b) of soil.
DHA plays a key role in the decomposition process of organic matter and can be used as an indicator for the evaluation of total cell oxidation activity [32]. Therefore, DHA activity is used to characterize the intensity of microbial activity. Urease can convert urea into ammonia and carbon dioxide or ammonium carbonate, and it reflects the intensity of nitrogen relevant reactions in the soil system [33]. The effects of SSB addition on the concentrations of DHA and urease in soil are shown in Figure 3. The addition of SSB increased the concentrations of DHA and urease in soil before planting, which rose from 3.83 μg IPTF/(g h) and 16.53 μg NH3-N/(g h) to 14.33 μg IPTF/(g h) and 32.00 μg NH3-N/(g h), respectively. Whether SSB is added or not, the concentrations of DHA and urease in soil increased after planting, and the concentrations of the DHA and urease in the soil added with 10% SSB reached 3.60 and 1.67 times as high as those of the control soil. These results implied that adding SSB could improve the activities of DHA and urease in soil, promote anaerobic microbial growth and synthesis of enzymes, and enhance microbial activity. This is because SSB influenced enzyme activity with the changes of physiochemical properties (especially pH) in soil, and the adsorption of enzymes and soil organic matter on SSB also changed the kinetic properties of enzyme activity [17].
\nEffects of SSB addition on the concentrations of DHA (a) and urease (b) in soil.
In the planting process, bacteria play an important role in the transformation of organic and inorganic matter in soil, while fungi have significant effects on the carbon and energy cycle in soil [18]. The bacteria and fungi counts are important indicators of microbial activity intensity, and effectively reflect whether the environment of soil is suitable for crop growth or not. The effects of SSB addition on the concentrations of bacteria and fungi in soil are shown in Figure 4. The addition of SSB increased the concentrations of bacteria and fungi in soil before planting, which rose from 2.43 × 106 and 0.77 × 106 CFU/g to 20.60 × 106 and 3.67 × 106 CFU/g, respectively. Whether SSB is added or not, the concentrations of both bacteria and fungi in soil increased after planting, and the bacteria and fungi concentrations in soil added with 10% SSB reached 2.84 and 2.62 times as high as those of the control soil, respectively. These results showed that the addition of SSB had beneficial modulation effects on the concentrations of bacteria and fungi during planting, and it could effectively enhance the microbial property of soil.
\nEffects of SSB addition on the concentrations of bacteria (a) and fungi (b) in soil.
AOA and AOB associated with the nitrification of soil are called the nitrifying bacteria. The higher concentrations of AOA and AOB can improve the conversion of other forms of nitrogen into available nitrogen fertilizer so as to enhance the fertility of soil and promote plant growth [34]. The effects of SSB addition on the concentrations of the AOA and AOB in soil are displayed in Figure 5. The addition of SSB increased the concentrations of AOA and AOB in soil before planting, which rose from 4.83 × 106 and 2.47 × 106 amoA copies/g to 8.63 × 106 and 6.07 × 106 amoA copies/g, respectively. Whether SSB is added or not, the concentrations of both AOA and AOB in soil increased after planting, and the AOA and AOB concentrations in soil on adding 10% SSB reached 1.76 and 2.23 times as high as those of the control soil, respectively. These results show that SSB addition could effectively increase the concentrations of microorganisms associated with soil nitrification before and after planting.
\nEffects of SSB addition on the concentrations of AOA (a) and AOB (b) in soil.
To sum up, the influence of SSB on the microbiological property are as follows: on the one hand, SSB stored and supplied a large amount of nutrients by the bonding of nutrient cations and inorganic anions in soil with its surface functional groups; on the other hand, SSB changed the physiochemical property of soil and reduced the toxicity of contaminants to soil microorganisms [17].
\nThe weights of the aboveground and underground parts of Chinese cabbage are considered as important indicators that directly reflect the influence of the physical, chemical, and microbial properties of soil on plant growth. Figure 6 shows the effects of adding SSB on the weight of Chinese cabbage. The weights of the aboveground and underground parts of Chinese cabbage increased with 10% SSB added to soil. The weight of edible aboveground part was 5.82 times and that of the underground part was 8.67 times as much as those from the control soil. These results can be explained by the fact that the addition of SSB brought the pH and EC of the original soil to suitable ranges for plant growth, and that the increases of the DHA activity, urease activity, bacteria concentration, and fungi concentration provided appropriate metabolic environment for soil microorganisms. This favorable metabolic environment further improved the microbial characteristics and forms a virtuous cycle [17]. In addition, SSB contains nutritive elements like K, P, and N at high concentrations, which increased the fertility of barren soil [9]. Therefore, the weights of Chinese cabbage increased significantly after SSB addition. This also showed that SSB had a positive effect on the growth of crop in barren soil.
\nEffects of adding SSB on the weight of Chinese cabbage planted.
Figure 7 shows the concentrations of HMs in the aboveground and underground parts of Chinese cabbage, respectively. For the aboveground part, the addition of SSB to soil significantly decreased the concentrations of Mn and Cd, and reduced the toxicity of Chinese cabbage in the edible part compared with the control group. For the underground part, the addition of SSB significantly decreased the concentrations of Mn, Pb, and Cd compared with the control group, which implied that the addition of SSB in soil inhibited the migration of HMs from soil to the underground part of Chinese cabbage.
\nEffects of adding SSB on the concentrations of HMs in aboveground part (a) and underground part (b) of Chinese cabbage planted.
It is widely accepted that the HMs in plant are entirely from the migration of the available HMs in the mixed soil during planting [4, 35]. Therefore, the concentrations of available HMs in soil before and after planting were measured to investigate the influence of SSB addition on the transfer of HMs, as shown in Table 3. The change rate of available HM concentration in soil after planting compared with that before planting was defined as:
\nHM | \nCondition | \nBefore planting (μg/g) | \nAfter planting (μg/g) | \n|
---|---|---|---|---|
Cr | \nControl | \n8.24 ± 0.01 | \n8.20 ± 0.38 | \n−0.49 | \n
10% SSB | \n6.80 ± 0.06 | \n6.68 ± 0.29 | \n−1.76 | \n|
Mn | \nControl | \n0.35 ± 0.02 | \n0.34 ± 0.02 | \n−2.86 | \n
10% SSB | \n0.34 ± 0.00 | \n0.31 ± 0.01 | \n−8.82 | \n|
Ni | \nControl | \n7.59 ± 0.02 | \n7.92 ± 0.03 | \n+4.35 | \n
10% SSB | \n7.10 ± 0.09 | \n7.08 ± 0.68 | \n−0.28 | \n|
Cd | \nControl | \n4.88 ± 0.11 | \n5.57 ± 0.22 | \n+14.14 | \n
10% SSB | \n4.62 ± 0.47 | \n4.75 ± 0.15 | \n+2.81 | \n|
Pb | \nControl | \n0.36 ± 0.05 | \n0.35 ± 0.06 | \n−2.78 | \n
10% SSB | \n0.27 ± 0.03 | \n0.25 ± 0.02 | \n−7.41 | \n
Concentrations and change rates of available HMs in soil before and after planting.
where, \n
The addition of SSB decreased the concentrations of available Cr, Mn, Ni, Cd, and Pb in soil before planting, which is mostly because the fractions of HMs in SSB are more stable than those in soil. After planting, the concentrations of available Cr, Mn, and Pb in control soil decreased by 0.49, 2.86, and 2.78%, respectively, which indicated that these HMs were taken up by cabbages or migrated to more stable fractions during planting. Compared with the control soil, the addition of SSB reduced the transfer of the available HMs in soil during planting and the \n
In order to investigate the effects of SSB addition on the migration of the available HMs in soil, the conversion rate of the content of available HM was defined as:
\nwhere \n
Condition | \n\n\n | \n||||
---|---|---|---|---|---|
Cr | \nMn | \nNi | \nCd | \nPb | \n|
Control | \n−0.46 | \n66.65 | \n4.35 | \n14.40 | \n−0.97 | \n
10% SSB | \n−1.62 | \n302.60 | \n−0.26 | \n3.50 | \n8.42 | \n
Conversion rates of the content of available HMs.
SSB has better pH and EC, more developed pore structure, and higher concentrations of nutrient elements compared with the original soil. The addition of SSB could adjust the pH of mine soil from acidic to neutral and increase the EC of soil. Also, the addition of SSB increased the concentrations of enzyme and microorganisms. Therefore, the changes of the physiochemical property and microbial environment improved the growth of Chinese cabbage. The edible aboveground and the underground parts of cabbage in SSB-amended soil weighed 5.82 times and 8.67 times as much as those from the control group. Moreover, the addition of SSB promoted the migration of Cr, Ni, and Cd from the available state to the more stable state due to the special properties of SSB and changes of soil environment. To sum up, SSB has positive effects on the planting in barren soil.
\nThe authors would like to thank Xiang Zhang for his valuable help. This work was supported by financial support received from the Industry Leading Key Projects of Fujian Province (2015H0044), the China-Japanese Research Cooperative Program (2016YFE0118000), the Scientific and Technological Major Special Project of Tianjin City (16YFXTSF00420), and the Key Project of Young Talent of IUE, CAS (IUEZD201402).
\nMost of the world’s population, especially Asia, use rice as the primary source of carbohydrates in their daily menu. Rice, as a staple food, is usually served with side dishes to complement the taste and also complement one’s nutritional needs. Rice can process with other food ingredients into new dishes, such as fried rice, yellow rice, or uduk rice.
Rice can be a source of food poisoning because it contaminated with dangerous pathogens. In general, food poisoning can cause by contaminant bacteria such as
According to the Food Standards Agency (FSA), there are nearly 900,000 food poisoning cases each year. The lifestyle that has changed in recent years has resulted in an increasing dependence on ready-to-eat food, eating out more than cooking, busyness results in having less time to prepare and cook food. This habit is the reason that increases the number of cases of food poisoning [19]. Apart from that, environmental factors also influence the level of contamination. Food prepared under unfavorable conditions and environment implies a higher incidence of food poisoning than others [18]. Food poisoning occurs more frequently in developing countries than in developed countries. This situation is due to differences in the level of sanitation between developed and developing countries [18].
Spores are more resistant to dry heat than humid heat, with heat resistance usually higher in foods with lower water activity. Spores are also more resistant to radiation than vegetative cells [22]. Nisin is a preservative that used to inhibit germination and spore growth. Antimicrobials that inhibit the growth of
Symptoms of
The diarrheal syndrome caused by enterotoxins produced by
No form of the disease is considered life-threatening for normal healthy individuals, with few fatal cases reported [22].
The pathogenic mechanisms for
Three types of enterotoxins are associated with a form of diarrhea syndrome, namely three components of the enterotoxin Hemolysin BL (HBL), three parts of Non-Hemolytic Enterotoxin (NHE) and one element of cytotoxin K. Enterotoxins are released into the small intestine by the surviving vegetative cells of
Up to 26% of the vegetative cells of
A vital virulence factor required to cause diarrhea symptoms is the ability of vegetative cells and
The pattern of transmission
Cases of contamination of
Year | Food | Country | Findings | Article title |
---|---|---|---|---|
2009 | Brown rice and glutinous rice | Korea | 15 (37%) of 83 samples of brown rice, 23 (37%) of 63 samples of glutinous rice | Prevalence, Genetic diversity, and Antibiotic Susceptibility of |
2009 | Raw rice | Amerika | Detection of Toxigenic | |
2012 | Cooked rice (white rice, fried rice) | Belgia | The concentration of cereulide found in rice dishes is around four ng/g | Prevalence and Levels of |
2012 | Cooked and raw rice | Pakistan | All rice samples showed the presence of | Microbial Assessment of Uncooked and Cooked Rice Samples Available in Local Markets of Lahore [5] |
2013 | Baby food (made from rice) | Iran | ||
2018 | Local unhulled (coarse) rice | Malaysia | The number of | Presence of |
2019 | Cooked rice (yellow rice) | Indonesia | 21% of yellow rice contaminated with | |
2020 | Rice/noodles | China | 59 out of 119 rice/noodle samples (50%) were positive for | A Study on Prevalence and Characterization of |
Cases of
Precautions for contamination of
Processing (thoroughly cooked and quickly cooled) is one of the easiest ways to prevent foodborne illness associated with Bacillus spp. [37].
Hot foods should store at 140°F/60°C or higher [37].
Reheating cooked food should be stored at 165°F/74°C [37].
If frozen food is allowed to thaw, it must remain at 41°F/5°C or lower [37].
Steaming under pressure, roasting, frying, and grilling foods will destroy the vegetative cells and spores if temperatures within foods are ≥ 145ºF/63ºC [38].
Foods that contain emetic toxins need to be heated to 259°F/126°C for more than 90 min—reheating food until steaming is not sufficient to kill emetic toxins [38].
Several chemical preservatives, including sorbate and benzoate, inhibit the growth of
Symptoms of staphylococcal food poisoning generally have a rapid onset, appearing approximately 3 h after ingestion (range 1–6 h). Common symptoms include nausea, vomiting, stomach cramps, and diarrhea. The individual may not show all the signs associated with the disease. In severe cases, headaches, muscle cramps, and temporary changes in blood pressure and pulse may occur. Recovery is usually between 1 and 3 days [39, 41]. Death is rare (0.03% for the general population) but occasionally reported in children and the elderly (death rate 4.4%) [40].
Staphylococcal food poisoning caused by the ingestion of foods containing pre-formed SE [44], there are several types of SE; enterotoxin A is most commonly associated with staphylococcal food poisoning. Enterotoxins D, E, and H, and to a lesser extent B, G, and I have also associated with staphylococcal food poisoning [45, 46].
SE produced during the exponential phase of
As the temperature decreases, the SE production rate also decreases. However, SE remained stable under frozen storage. SE is highly resistant to heating and can withstand the processes used to sterilize low-acid canned foods. SE production can occur in the pH range 4.5–9.6, with an optimum of 7–8. SE production can occur in anaerobic and aerobic environments; however, toxin production is optimal under aerobic conditions [41].
Staphylococcal food poisoning occurs when the food consumed contains SE produced by
It estimated that in the US,
Foods associated with the staphylococcal food poisoning outbreak include meat and meat products, poultry and egg products, milk and dairy products, salads, cream sandwich products, and sandwich stuffing. Foods that require extensive handling during preparation and stored above refrigeration temperature (4°C) for a long time after development frequently implicated in staphylococcal food poisoning [39]. Foods high in starch (such as rice) and protein believed to support SE production [41].
Cases of contamination of
Year | Food | Country | Findings | Article title |
---|---|---|---|---|
2001 | Rames rice | Indonesia | The number of | Study of Microbiological Safety of Snack Food at the FATETA-IPB Canteen, Bogor [10] |
2003 | Rice at the restaurant | Brazil | Rice containing | An outbreak of staphylococcal food poisoning in the Municipality of Passos, MG, Brazil [11] |
2004 | Rice cake | Korea | 19.3% of rice cakes were contaminated with | Occurrence of Toxigenic S |
2010 | Uduk rice | Indonesia | The frequency of isolation of coagulase-positive | Risks of |
2014 | Kerala matta rice | India | Kerala matta rice samples contained coagulase-positive | Outbreak of Staphylococcal Food Poisoning [14] |
2019 | Yellow rice | Indonesia | 7% of yellow rice contaminated with | |
2019 | Jollof rice | Nigeria | Identification and anti-bacterial Testing of |
Cases of
Precautions for contamination of
The permissive temperature for growth and toxin production by
Serving food quickly when stored at room temperature, wearing gloves, masks, hairpins during food handling and processing, washing hands frequently, maintaining personal hygiene for food handlers can help prevent
Other precautions such as raw material control, proper handling and processing, adequate cleaning, and disinfection of equipment used in food processing and preparation must take [50].
Environmental factors that can play an essential role in the proliferation of bacteria and the production of
It knows that pathogens transmitted through contaminated rice can cause food poisoning, which occurs due to consuming rice containing pathogenic bacteria. Several cases of contamination of
Thanks go to students and lecturers of the Medical Laboratory Technology Poltekkes Kemenkes Banjarmasin, Indonesia who have supported the writing of this manuscript and to all parties who did not directly play a role in the writing process.
The authors declare no conflict of interest.
hemolysin BL non-hemolytic enterotoxin staphylococcal enterotoxin
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