Tours in constructed solution attractor A for
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Shaheer Akhtar and Prof. Hyung-Shik Shin",publishedDate:null,coverURL:"https://cdn.intechopen.com/books/images_new/10582.jpg",keywords:"Ion Implantation, Photomask Fabrication, Photovoltaic Materials, Solar Thermal, Mass Spectrometric, Electrochemical, Molecular Thermodynamics, Sustainable Energy Conversion, Energy Production and Storage, Green Technologies, Bioenergy and Biofuels to the Storage, Bioinspired Materials and Systems",numberOfDownloads:null,numberOfWosCitations:0,numberOfCrossrefCitations:null,numberOfDimensionsCitations:null,numberOfTotalCitations:null,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"November 17th 2020",dateEndSecondStepPublish:"February 17th 2021",dateEndThirdStepPublish:"April 18th 2021",dateEndFourthStepPublish:"July 7th 2021",dateEndFifthStepPublish:"September 5th 2021",remainingDaysToSecondStep:"16 days",secondStepPassed:!0,currentStepOfPublishingProcess:3,editedByType:null,kuFlag:!1,biosketch:"Professor Sadia Ameen is a Gold Medalist in academics and recipient of the Best Researcher Award. She has more than 130 peer-reviewed papers in the field of solar cells, catalysts, sensors, contributed to book chapters, edited books, and is inventor/co-inventor of patents.",coeditorOneBiosketch:"Associate professor at Jeonbuk National University, Korea. He is an expert in the synthesis of semiconductor nanomaterials, composite materials, polymer-based solid-state films, solid polymer electrolytes, and electrode materials, solar cells, small molecules based organic solar cells, and photocatalytic reactions.",coeditorTwoBiosketch:"Professor in School of Chemical Engineering, Jeonbuk National University, and also President of Korea Basic Science Institute (KBSI), Republic of Korea. The high impact of his work has been recognized by invitations to speak at international/national conferences and scientific meetings.",coeditorThreeBiosketch:null,coeditorFourBiosketch:null,coeditorFiveBiosketch:null,editors:[{id:"52613",title:"Dr.",name:"Sadia",middleName:null,surname:"Ameen",slug:"sadia-ameen",fullName:"Sadia Ameen",profilePictureURL:"https://mts.intechopen.com/storage/users/52613/images/system/52613.jpeg",biography:"Professor Sadia Ameen obtained her Ph.D. in Chemistry (2008) and then moved to Jeonbuk National University. Presently she is working as an Assistant Professor in the Department of Bio-Convergence Science, Jeongeup Campus, Jeonbuk National University. Her current research focuses on dye-sensitized solar cells, perovskite solar cells, organic solar cells, sensors, catalyst, and optoelectronic devices. She specializes in manufacturing advanced energy materials and nanocomposites. She has achieved a gold medal in academics and is the holder of a merit scholarship for the best academic performance. She is the recipient of the Best Researcher Award. She has published more than 130 peer-reviewed papers in the field of solar cells, catalysts and sensors, contributed to book chapters, edited books, and is an inventor/co-inventor of patents.",institutionString:"Jeonbuk National University",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"5",totalChapterViews:"0",totalEditedBooks:"3",institution:{name:"Jeonbuk National University",institutionURL:null,country:{name:"Korea, South"}}}],coeditorOne:{id:"218191",title:"Dr.",name:"M. Shaheer",middleName:null,surname:"Akhtar",slug:"m.-shaheer-akhtar",fullName:"M. Shaheer Akhtar",profilePictureURL:"https://mts.intechopen.com/storage/users/218191/images/system/218191.jpg",biography:"Professor M. Shaheer Akhtar completed his Ph.D. in Chemical Engineering, 2008, from Jeonbuk National University, Republic of Korea. Presently, he is working as Associate Professor at Jeonbuk National University, the Republic of Korea. His research interest constitutes the photo-electrochemical characterizations of thin-film semiconductor nanomaterials, composite materials, polymer-based solid-state films, solid polymer electrolytes and electrode materials for dye-sensitized solar cells (DSSCs), hybrid organic-inorganic solar cells, small molecules based organic solar cells, and photocatalytic reactions.",institutionString:"Jeonbuk National University",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"1",totalChapterViews:"0",totalEditedBooks:"0",institution:{name:"Jeonbuk National University",institutionURL:null,country:{name:"Korea, South"}}},coeditorTwo:{id:"36666",title:"Prof.",name:"Hyung-Shik",middleName:null,surname:"Shin",slug:"hyung-shik-shin",fullName:"Hyung-Shik Shin",profilePictureURL:"https://mts.intechopen.com/storage/users/36666/images/system/36666.jpeg",biography:"Professor Hyung-Shik Shin received a Ph.D. in the kinetics of the initial oxidation Al (111) surface from Cornell University, USA, in 1984. He is a Professor in the School of Chemical Engineering, Jeonbuk National University, and also President of Korea Basic Science Institute (KBSI), Gwahak-ro, Yuseong-gu, Daejon, Republic of Korea. He has been a promising researcher and visited several universities as a visiting professor/invited speaker worldwide. He is an active executive member of various renowned scientific committees such as KiChE, copyright protection, KAERI, etc. He has extensive experience in electrochemistry, renewable energy sources, solar cells, organic solar cells, charge transport properties of organic semiconductors, inorganic-organic solar cells, biosensors, chemical sensors, nano-patterning of thin film materials, and photocatalytic degradation.",institutionString:"Jeonbuk National University",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"3",totalChapterViews:"0",totalEditedBooks:"0",institution:{name:"Jeonbuk National University",institutionURL:null,country:{name:"Korea, South"}}},coeditorThree:null,coeditorFour:null,coeditorFive:null,topics:[{id:"8",title:"Chemistry",slug:"chemistry"}],chapters:null,productType:{id:"1",title:"Edited Volume",chapterContentType:"chapter",authoredCaption:"Edited by"},personalPublishingAssistant:{id:"194667",firstName:"Marijana",lastName:"Francetic",middleName:null,title:"Ms.",imageUrl:"https://mts.intechopen.com/storage/users/194667/images/4752_n.jpg",email:"marijana@intechopen.com",biography:"As an Author Service Manager my responsibilities include monitoring and facilitating all publishing activities for authors and editors. 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Venkateswarlu",coverURL:"https://cdn.intechopen.com/books/images_new/371.jpg",editedByType:"Edited by",editors:[{id:"58592",title:"Dr.",name:"Arun",surname:"Shanker",slug:"arun-shanker",fullName:"Arun Shanker"}],productType:{id:"1",chapterContentType:"chapter",authoredCaption:"Edited by"}}]},chapter:{item:{type:"chapter",id:"45283",title:"Seeing with Two Eyes: Integration of Binocular Retinal Projections in the Brain",doi:"10.5772/56491",slug:"seeing-with-two-eyes-integration-of-binocular-retinal-projections-in-the-brain",body:'In the visual system, accurate representation of images throughout each stage of processing requires the maintenance of topography in different but interconnected brain regions [1]. Topographic organisation also allows information from both eyes to be precisely integrated, underpinning depth perception and interpretation of the visual world. In the absence of this organisation within and between eye-specific projections, visual information becomes scrambled within the brain and function is compromised [2,3]. Despite advances in recent years that have given insight into the mechanisms responsible for topographic mapping of visual projections within the brain, comparatively less is known about the mechanisms that underpin the integration of binocular pathways. The aim of this review is to summarise what is known about the developmental processes that establish topography in binocular projections in key animal models. We review experiments in mice that examine the development of binocular projections to the superior colliculus and address the role of molecular guidance cues. We will also describe experiments in Siamese cats that shed light on the organisation of binocular projections to the lateral geniculate nucleus and visual cortex. Finally, we will discuss this research in the context of early diagnosis and rehabilitation strategies of loss of binocular vision in humans.
We will first describe the development and organisation of contralateral (crossed) and ipsilateral (uncrossed) visual projections to the major visual brain centres: the superior colliculus (SC), dorsal lateral geniculate nucleus (dLGN) and primary visual cortex (V1), with focus on their integration in relation to visual space. We will then consider how topography is established in the ipsilateral retinocollicular projection; specifically we will review recent evidence for the role of axon guidance molecules in organising the ipsilateral projection [2,3] in the context of early experiments which explored the role of the contralateral retinal projection in integrating binocular projections [4,5].
Light casts an image onto the retina, is transduced into electrical signals by photoreceptors, and after intra-retinal processing the information is sent to the brain by the only efferent cells of the retina, the retinal ganglion cells (RGCs). Two of the major RGC outputs in the mouse are to the contralateral superior colliculus (SC) in the midbrain (the mammalian homologue of the optic tectum) and to the contralateral dorsal lateral geniculate nucleus (dLGN) of the thalamus. Neurons in the dLGN that receive retinal input then project to the ipsilateral primary visual cortex (V1). In addition, a subset of retinal ganglion cells project to the ipsilateral LGN and SC, approximately 3% of all RGCs in pigmented mice [6] and rats [7]. This circuitry is summarised in Figure 1. Our focus is the integration of ipsilateral and contralateral projections within the SC, LGN and visual cortex to provide the basis for binocular vision. This is key for processes such as depth perception and acuity in the frontal visual field. Other visual projections, although important in vision (reviewed extensively in Sefton et al., 2004), are not considered further here.
A schematic diagram of the main visual system circuitry in the mouse. dLGN= dorsal lateral geniculate nucleus, SC= superior colliculus, V1=primary visual cortex.
In most species, the number and distribution of ipsilateral RGCs within the retina correlates with binocular overlap and the orientation of the orbits [8]. Mice have laterally placed eyes and limited binocular vision; in pigmented mice, ipsilaterally projecting RGCs represent about 3% of the total RGCs population and are located in a temporo-ventral cresent, interspersed among a majority of contralaterally projecting cells [6]. Albino mice have an even smaller proportion with between 0.5-2% of the total RGC population projecting ipsilaterally [9]. This arrangement provides binocular vision in a 40-60o strip within the superficial visual field [10,11]. In normal cats, the proportion of ipsilaterally projecting RGCs is 17% [12], but is reduced to about 13% (variable) in Siamese cats [13]. By contrast, in primates (including humans) with frontally oriented eyes, about 50% of RGCs project ipsilaterally, and this figure is also thought to be reduced in albinos [14]. Unlike in mice, in cats and primates, there is a strict vertically oriented zone of transition at the area centralis/fovea between the purely contralateral projection found in nasal retina to the predominantly ipsilateral projection in temporal retina [13], although in Siamese cats, this zone of transition is shifted towards temporal retina [13]. In both species, the resulting binocular field is extensive and oriented towards the frontal field (120o in cats, 140o in primates; [8].
Stereopsis is the ability to perceive depth based on the differences between the information arriving on the two retinae [15], A key concept in stereopsis is that of the horizontal horopter [16], the collection of points in visual space at which objects are detected by corresponding (anatomically identical) points in the two retinae [17]. In species with frontally placed eyes and large binocular overlap the horopter takes the shape of a curved line running through the fixation point and fusion of images occurs only in a small volume of visual space around the horopter, known as “Panum’s fusional area” [18]. Points in this area fall on slightly different retinal locations and thus lead to “retinal disparity”, the basis of quantitative stereoscopic depth discrimination [17]. Species with frontally oriented eyes often have the ability to improve depth perception by fixating, or moving the eyes, so that the two foveae or areae centralis (the retinal regions of highest visual acuity in primates and cats respectively) are aimed at the object of interest [17]. In humans, fixation allows the perception of depth differences of up to 0.0014 degrees [17].
Binocular vision or stereopsis occurs when neural circuits use the disparity (parallax) information to compute depth [15]. In order for these computations to occur, the projections (ipsilateral and contralateral projections) from each eye that carry information from Panum’s area must be brought together in the same brain regions and on to binocularly driven, disparity sensitive neurons, a phenomenon that occurs in steps as information is passed along the visual pathway via the dLGN [19].
There is an organisational challenge in the integration of ipsilateral and contralateral projections within visual brain centres. The eyes are reflectively symmetrical across the midline and RGCs map based on their position to the nose, therefore visual space is mapped in opposite orientations in each hemisphere (Fig 2A). For example, in the SC, nasal retina maps to caudal SC and temporal retina maps to rostral SC using gradients of ephrin guidance cues (amongst other molecules, discussed below; [20]. Therefore, in order to integrate the ipsilateral projection with the contralateral one and maintain a continuous and coherent representation of visual space, the ipsilateral projection must “flip” relative to the contralateral one (fig 2B; [5,6,21]. Note that this holds true not only for mice with laterally positioned eyes, but also for cats and humans with frontally positioned eyes [22].
Monocular and binocular representation of the visual field in the superior colliculus (SC) in mice, modified from [2]. A: diagrammatic representation of visual field mapping across both SCs. B Diagrammatic representation of the integration of the ipsilateral and contralateral retinal projections within a single SC, and the resulting representation of visual field information. Letters represent visual field information and numbers represent RGCs within the retina and their terminations within the SC. In mice, the ipsilateral and contralateral retinal axons (numbers) project in reverse orientation relative to each other within the SC, providing a continuous representation of the binocular visual field (letters).
The reversal of the orientation of the ipsilateral relative to the contralateral map is also observed in the dLGN as illustrated by the Siamese cat experiments (see below). This organisation raises several possibilities of the mechanisms underpinning the organisation of the ipsilateral projection. One possibility is that unique guidance cues that are specific to the uncrossed projection might be expressed on RGC axons or within the SC. Alternatively, the same molecular cues might differentially guide ipsilateral and contralateral RGCs. A third possibility is that the ipsilateral projection maps onto the contralateral projection by activity-dependent mechanisms based on the similarity of visual information from both eyes. We will describe the development of both structures (SC and dLGN) and for each, review experiments that address the possible mechanisms of integration of ipsilateral and contralateral projections.
Retinal ganglion cells are generated between embryonic (E) days 11-19 in pigmented mice [23]. Contralaterally and ipsilaterally projecting RGCs are generated at the same time, though not on the same timetable; cells which cross at the optic chiasm are generated throughout this period, whereas cells that do not cross are generated within ventro-temporal retina mostly between E11-E16 [23]. Murine RGC axons reach the optic chiasm by E14 [24] where they make the decision to cross (contralateral RGCs) or not (ipsilateral RGCs; [25]).
The superior colliculus of the midbrain has an important role in integrating cortical and retinal inputs, and functionally is involved in recognition, localization and responsiveness to novel stimuli (Sefton et al., 2004). The majority of visually driven input to the superficial layers of the SC is from the retina and the primary visual cortex and, as for the dLGN, mapping of the ipsilateral and contralateral visual projections provides a continuous representation of the visual field even though the inputs are anatomically segregated. There are also auditory and somatosensory inputs to intermediate and deep SC layers as well as input from secondary visual cortices, parabigeminal nucleus, and a large number of nuclei in the brainstem [26,27]. Major outputs are to the thalamus, the pons, as well as brainstem nuclei and spinal cord segments involved in the control of head and neck movements [10,26,27,28,29].
There are seven layers in the superior colliculus in mammals. The most superficial three layers primarily receive retinal input: the stratum zonale, stratum griseum superficiale and the stratum opticum [26,30,31]. The superficial layers receive also inputs from the visual cortex and the intermediate and deep layers receive input from other cortical areas [32].
The neurons of the SC in the mouse are produced between E11-E13, with the most superficial layers being produced last [33]. Layers resembling those seen in the mature mouse are present by postnatal (P) day 6 [33,34]. Contralateral RGC axonal outgrowth is present in the SC by E15 and continues after birth [24,33,34,35]. Ipsilateral fibres appear later, around E19 until P3 [24]. Incoming contralateral [36] and ipsilateral [37] axons all extend past their appropriate termination zones and as a result, input is initially scattered and widespread [38], with only rough retinotopic topography and without segregation of ipsilateral and contralateral fibres. Refinement of the projections (topography and eye-specific) occurs by the formation along the rostrocaudal axis of interstitial branches that are targeted to the location of the topographically appropriate termination zone [39]. There is evidence for the interaction between TrkB/BDNF and ephrin-A ligands to promote topographic specific branching [40]. These branches form dense arborisations within the superficial grey layer of the SC and any ectopic branches and overshooting axons are removed [41,42,43,44]. Pruning begins to occur by P4 and is complete by P8-P11 for both contralateral and ipsilateral projections [24,37]. As a result, the retinocollicular map is established and refined in the first two postnatal weeks [45] such that temporal retinal axons project to rostral SC and nasal retinal axons project to caudal SC. The ipsilateral axons terminate in small patches that are within the rostro-medial superficial grey but located slightly deeper than the contralaterally projecting axons [10].
In the mouse, contralateral RGC axons arrive in the dLGN by E16 and ipsilateral axons by E18 [24]. Mature retinotopy in the dLGN is mapped such that temporal axons project to dorsomedial dLGN and nasal axons project to ventrolateral dLGN. There is overlap of contralateral and ipsilateral fibres during the first postnatal week; segregation occurs before the eyes open and is complete by the end of the second postnatal week (P12-14) [41,46] with the ipsilateral terminals being restricted to an isolated roughly trapezoid shape patch within the contralateral terminals [47,48]. Carnivorous mammals such as cats, ferrets and shrews, as well as primates, have more complex layering and segregation within the dLGN based on the characteristics of the RGC inputs [49], reflecting their more sophisticated thalamo-cortical visual processing circuitries.
From the LGN, information from both eyes is carried to neurons in layer 4 of primary visual cortex. In cats and primates [50,51], ipsilateral and contralateral inputs are segregated into ocular dominance columns in layer 4 throughout V1. By contrast in rodents, only lateral visual cortex receives binocular inputs with the medial part being purely monocular [52,53,54]. Nonetheless, in all mammals, ipsilateral and contralateral inputs converge on neurons in layer 2/3, where processing of binocular disparity and thus stereopsis occurs.
The circuitry of the visual system is established via complex guidance mechanisms that involve responses to molecular cues, and interactions between projections by activity-dependent mechanisms [1,55,56]. During development, newly-generated neurons send out developing axons that are guided in their outgrowth via cues which may be diffusible or cell-surface bound, and which may attract or repulse actively growing processes [56]. These various molecular cues assist in targeting, axon fasciculation, and the pruning of inappropriate axonal arbours. Targeting is both structural (in assisting the axon to locate the correct structure within the brain) and detailed (so that the connections are to the correct postsynaptic cell in the appropriate cell layer). In addition, activity dependent pruning further refines the developing projections such that accuracy is maximised [57,58,59]. This review will focus on Eph/ephrin interactions and Teneurins since these proteins have been shown to be important in establishing topography within the ipsilateral as well as the contralateral projection [2,3]. Other guidance cues for example semaphorins, engrailed and L1 are crucial for the contralateral projection [60,61,62] In addition other molecules that have been implicated in eye specific segregation and terminal arborisation, but not in fundamental topographic organisation of the ipsilateral projection, such as BDNF, nitric oxide and the NMDA receptor [63,64,65] will not be discussed further.
The property which makes ephrins and Teneurins unique and ideally suited to topographic mapping between brain regions is their graded expression patterns. This mechanism of action is consistent with the ‘chemoaffinity hypothesis’, first proposed by Sperry [66] some time before the molecules were identified. This theory predicted that topographic mapping would require unique cytochemical cues expressed by each RGC and its target neuron in the SC. Within the visual system, the Eph/ephrin and teneurin proteins fulfilled this prediction by their graded expression across the origin and target structures in interconnected regions (retina – SC ; retina – dLGN – visual cortex) [55], conferring a unique coordinate in each structure by amount of protein [3,67,68,69].
Ephrins are cell-surface bound ligands that bind to Eph receptors, which are receptor tyrosine kinases. The Eph/ephrin interaction is involved in cell-contact mediated signalling that aids cell and tissue organisation [70,71] There are two classes of ephrin ligands, ephrin-A and ephrin-B, classified according to mechanisms of membrane attachment. The members of the ephrin-A class are linked to the membrane by a glycerophospholipid and the ephrin-B class ligands are transmembrane molecules [72]. There are multiple ephrins and Eph receptors in the two classes; with some exceptions [73], ephrin-As will only bind to EphA receptors though binding within each class is non-specific and ligands are able to bind to multiple receptors [70].
Ephs and ephrins are expressed during nervous system development by the target tissue and growth cones of the developing axon. Following Eph-ephrin binding, the growth cone can be attracted (primarily through EphB-ephrin-B signalling) or repulsed (EphA-ephrin-A signalling) directing axons into appropriate regions within brain structures and setting up tissue boundaries and internal organisation [74,75]. The mechanism of growth cone stabilisation or collapse is by modulation of the cytoskeleton [76,77] and can occur bidirectionally via the ephrin and/or the Eph receptor [78,79]. In addition, both receptors and ligands are found to be expressed in the tissue of origin and in the target cells, further regulating the signal transduction process and sensitivity to target guidance cues [80,81,82].
During development retinal ganglion cells make a crucial choice at the chiasm. The partial decussation of retinal axons at the optic chiasm is thought to be due to the action of ephrin-B ligands, specifically ephrin-B2 [83] which is expressed on specialised radial glial cells that are situated each side of the midline at the base of the third ventricle [84]. This localised ephrin-B1 at the chiasm causes repulsion of ipsilaterally projecting RGC axons which express EphB1 [85,86,87] and as a result they do not cross but remain on the same side of the brain. However, EphB triple knockout mice retain some ipsilaterally projecting axons, suggesting that other molecules, such as Nogo [88,89] may also play a role.
Within the LGN, ephrin ligands and Eph receptors are expressed as gradients correlating topographic organisation of the contralateral projection [41]. During postnatal development, there is a correlation between a peak of ephrin expression and the segregation of eye-specific input to the dLGN when expression becomes restricted to the contralateral eye input areas of the dLGN, but no evidence that Eph/ephrin interactions regulate mapping of the ipsilateral retinogeniculate projection [41]. Similarly in visual cortex, there is evidence for a role of Eph/ephrin interactions in establishing contralateral but not ipsilateral topography [41,58].
By contrast, there is strong evidence for a role of Eph/ephrin interactions in establishing ipsilateral topography in the SC. Graded expression of ephrin ligands was first demonstrated in the tectum of the chick [67,68] and knockout mice subsequently confirmed the key role of these proteins in mapping the contralateral visual projection [45,90]. More recently, a role for ephrins in mapping the ipsilateral projection in the superior colliculus was demonstrated by anatomical tracing and electrophysiological experiments which compared the distribution of ipsilateral and contralateral projections [2]. The ipsilateral projection was expanded to fill the full extent of the SC and the organisation of the projection was highly abnormal and misaligned with the contralateral one. Furthermore, the study showed a behavioural deficit that could be rescued by blocking the input to one eye, confirming that although small in size, the ipsilateral projection has significant functional impact [2].
In most species studied to date, the Teneurin family contains four members (Ten-m1-4; [91], which are large transmembrane proteins that are found as homo or heterodimers [92,93]. They are believed to interact with Ten-m molecules on other cells via homophilic or heterophilic interactions [92,94].
Like Ephs and ephrins, Teneurins are expressed as gradients within many regions of the developing brain [95] and relevant to this chapter, have matching gradients across the interconnected visual brain regions (retina, dLGN, SC and visual cortex; [3,96]. However, in contrast to the Ephs and ephrins, very little is known about how the Teneurins exert their guidance activity. In response to binding, Teneurins have several potential signalling methods involving the extracellular and intracellular domains. The C-terminus (extracellular domain) of Teneurins can be cleaved by furin to produce a peptide with homology to the corticotrophin releasing factor (CRF; [97,98]) that has been shown to influence neurite extension and anxiety-related behaviours [99,100]. In addition, the intracellular domain has multiple tyrosine phosphorylation sites, calcium binding motifs and two SH3 binding sites, providing opportunities to interact with many signalling pathways as well as the cytoskeleton [101]. Furthermore, the intracellular domain has been shown to translocate to the nucleus and regulate transcription [101,102].
One of the Teneurin family members, Ten_m3, has been shown to play a key role in the organisation of eye specific inputs in the dLGN and visual cortex [3,103] and similar to the ephrins, is expressed in matching gradients across the retina and visual brain regions [3]. However, unlike Eph/ephrin interactions, Ten_m3 appears to have no impact on the contralateral projection. Expression peaks during early postnatal development and is highest in regions of the visual pathway associated with the ipsilateral projection. The role of Ten_m3 in mapping the ipsilateral projection was demonstrated in Ten_m3 knockout mice, in which normal numbers of ipsilaterally projecting RGCs are present, but their terminals extend abnormally broadly within the dLGN, covering the full dorso-medial to ventrolateral extent of the nucleus and invading regions that are normally monocular (contralateral) [3]. Normal segregation of the eye-specific inputs in these mice combined with normal contralateral topography further confirmed a specific effect of Ten_m3 on topographic mapping of ipsilateral projections. Aberrant projections were also observed in visual cortex, where ipsilateral input was not restricted to the laterally located binocular zone, but rather formed patches within the monocular region that are reminiscent of ocular dominance domains [103]. Furthermore, recording from cortical cells confirmed that binocular stimulation leads to functional suppression of mismatched binocular inputs [103]. Similar to results with ephrin-A knockout mice, Ten_m3 have abnormal visual function that can be rescued by blocking the input from one eye by injecting tetrodotoxin [3]. Ten_m3 is also implicated in mapping the ipsilateral projection within the SC [37] with knockout mice displaying mapping errors in both horizontal and azimuthal axes of the representation of the visual field. This study also examined for the first time the developmental time-course of ipsilateral retinocollicular projections relative to contralateral ones.
For the Ephs and ephrins, an important tool used to study this graded expression pattern was the stripe assay, which studied the growth behaviours of RGCs from different retinal locations on substrates made up of collicular membranes [104,105]. Temporal axons were more inhibited than nasal axons, and though they would grow on both anterior and posterior collicular membranes, they showed a preference for anterior membranes, their natural target [106]. Nasal axons did not show a consistent preference (although see [107]). Perhaps surprisingly, Ten-ms have not been studied in the stripe assay, possibly because the technique has not been used in recent years: although membrane stripe assays provided a foundation for understanding how the retinotopic map develops, there are limitations with these studies. The artificial in vitro conditions, sometimes using lysed or non-neuronal cells, did not reproduce the complex environment of the developing brain and may have adversely affected retinal explant outgrowth. These initial studies also failed to identify the importance of the concentration gradient itself [69,108,109] or the complexity of the multiple interactions between ephrins and other proteins that have since been elucidated [43,110,111]. However, such studies provided the useful background for studying topographical development in vivo. A particular limitation has been in the study of ipsilaterally projecting RGCs which represent such a small proportion of the total RGCs that their behaviour, even if different from that of contralaterally projecting cells, would not have been noted.
For both molecules, transgenic mice have been key tools in elucidating their role in guiding visual projections, in particular single, double and triple ephrin-A knockout mice [45,112,113], as well as Ten_m3 knockout mice [3,37], which provide much of the data reviewed below. Other Eph transgenic mice have been useful in elucidating the principles of topographic mapping by Ephs, in particular an elegant study by Brown and colleagues which demonstrates the importance of graded expression in point to point mapping [69].
As reviewed above, the development of the ipsilateral retinocollicular projection is at least in part regulated by molecular guidance cues. However, studies that removed one eye at birth have indicated that the contralateral projection has an influence on the development of the ipsilateral projection. In monocular enucleation, one eye is removed at, or in some cases, before birth [114,115]. The age of enucleation has a significant effect on the surviving ipsilateral pathway. Rats enucleated at birth have an expanded uncrossed retinofugal pathway whereas those enucleated prenatally (E16.5) develop a smaller pathway than normal [114]; there is a greater number of retinal ganglion cells which project ipsilaterally and this seems to be due to an increase in survival of those retinal ganglion cells which would die under normal conditions [7]. A similar effect is seen in pigmented mice enucleated in utero [5,116] as well as in other species when prenatal and neonatal enucleation time-points are compared [117]. It seems that the two events which affect this outcome are whether the fibres have reached the chiasm and terminal location at enucleation [114].
The main change in the surviving ipsilateral RGC pathway is in the failure of retraction of growth into more caudally located regions of the superior colliculus that are normally occupied by terminations from the contralateral eye. In rats enucleated on at birth and then examined as adults, functional terminations were recorded in locations more caudal relative to their retinal position than seen in the ipsilateral projections of normal rats [5]. Crucially, the topography of this projection is as per the normal (non-enucleated) ipsilateral pattern. A similar result was obtained in the dLGN following enucleation in rats [118]. However, when rats were enucleated before birth, there was a reversal in the polarity of rostral-caudal mapping in the SC [5]. This suggests the importance of prior innervation of contralateral axons to the SC in the final distribution of ipsilateral terminations as contralateral RGC axons enter the SC prior to birth, whereas the ipsilateral axons arrive later [24].
The finding of normal ipsilateral topography in the SC following monocular enucleation at birth is particularly interesting when considered in the context of how RGC axons respond to the ephrin gradient. Typically, temporal RGC axons terminate in the contralateral rostral superior colliculus. However, those that project ipsilaterally terminate in more caudal positions, suggesting they either ignore or respond differently to the repulsive ephrin gradient that restricts contralateral temporal axons to rostral SC (Figure 2). Moreover, the results highlight that ipsilateral RGC axons can terminate in topographically appropriate locations even in the absence of the contralateral retinocollicular topographic map.
A key model that has provided insight into the organisation of the ipsilateral projection in the LGN and visual cortex is the Siamese cat. As described by several groups, the visual system of the Siamese cat has a reduced ipsilateral retinal projection, resulting in significant reorganisation within the dLGN and visual cortex [119,120,121]. The abnormality has been definitively linked to a homozygous mutation at the albino locus[122] which affects chiasm crossing by RGC axons [123]. Interestingly, at least in the cat, the extent of ipsilateral and contralateral projections is different for different RGC subtypes [124,125]. It remains unclear to this day how changes in pigmentation affect this specific aspect of axonal guidance [126].
In Siamese cats, retinogeniculate fibers representing about the first 20 degrees of ipsilateral visual field in each eye cross aberrantly in the optic chiasm, providing a larger retinal input to the contralateral dLGN [119]. There is not sufficient space for these aberrant fibres to terminate in the A lamina of the dLGN where contralateral fibres would normally arrive. Therefore they overflow into the A1 lamina of the dLGN that normally receives ipsilateral input [119,127]. Furthermore, anatomical and physiological studies of the LGN confirm that this additional projection aligns itself with the topography of the ipsilateral but not contralateral projections, resulting in a “mirror image” of the normal representation [119].
The organisation of ipsilateral projections within the dLGN is thus severely disordered and predictably results in downstream rearrangement of visual pathways in the geniculocortical [121,128], corticogeniculate [129,130] and callosal projections [131,132], as well as cortical associational pathways [130]. Interestingly, when an albino-like representation of the ipsilateral hemifield is induced in the visual cortex of normally pigmented cats, these downstream defects are also observed, suggesting that they are secondary to the initial misrouting of ganglion cells at the optic chiasm [133] rather than a direct consequence of the albino mutation [134].
Most attention has been focused on the geniculocortical pathway, where previous work has reported two distinct modes of processing the aberrant retinal input to the LGN [135]. Work carried out at Harvard defined the “Boston” variety of Siamese cat [121], in which the input that arises from the abnormal section of the dLGN is modified to integrate into cortical map and provide a continuous topographic representation of the visual field. By contrast, work in a Chicago laboratory defined the “Midwestern” Siamese cat [128], in which the abnormal input from the dLGN is silenced. Importantly, these two models provided an opportunity to examine the behavioural consequences of abnormal binocular inputs to LGN and visual cortex. In agreement with the low numbers of binocularly driven cells in visual cortex [136], stereoscopic depth perception and binocular summation in contrast sensitivity have been found to be impaired in Siamese cats [137,138]. However, there was no correlation between squint and the extent of ipsilateral visual field represented in the visual cortex for either variety of Siamese cat [127].
The importance of binocular integration in the visual centres is evidenced by the loss of visual acuity that can occur in amblyopic individuals. Amblyopia is a broad pathological condition where there is dysfunction in the processing of visual information [139]. It can be caused by misalignment of the retinal output to the brain, in disorders such as strabismus (ocular misalignment, such as in ‘lazy eye’ syndromes), anisometropia (differences in refractive error), and monocular deprivation [139]. The downstream effects of such pathologies involve a degradation of visual acuity and other visual functions associated with binocular processing due to misalignment of retinal inputs.
A more complete loss of visual function occurs with monocular enucleation in which one eye is removed, and provides a unique opportunity to study the importance of binocularity in humans. In such cases, both motion processing and oculomotor behaviour are reduced in enucleated individuals [140]. This processing occurs in the associative visual cortex areas and in the midbrain and suggests the importance of binocular summation in these tasks. However, in some tests related to spatial acuity, enucleated individuals performed better than normally sighted people, although this was strongly related to the age at which enucleation occurred. This may be due to the adaptable nature of the cortex, with incoming connections from the intact eye taking up a relatively larger area of the cortex.
Although rodents are often used as models for the study of the visual system, the crossover at the optic chiasm (3%) is considerably less than that of humans (50%). However, the treatment paradigms which have been studied in rodents may still be applicable to humans due to the similarities in the plastic nature of the visual cortex. The visual cortex is especially sensitive to external influences such as amblyopic pathologies during the critical period. This can last up to 7 years in humans, but only 5 weeks in mice (~32 days [141]; rats [142]). During this time, if there are any abnormalities, they can be successfully treated by intervention because the neuronal connections are still developing. The task becomes considerably harder once the critical period has closed, but work in rodents can help to study treatments which may work in older individuals in recovering visual acuity.
Loss of visual acuity can be induced in a rodent model of through the use of monocular deprivation, in which one eyelid is sutured during the critical period of postnatal development and the remaining eye then becomes dominant in the visual cortex, a phenomenon first described in cats [143]. Typically, such a condition can be reversed if the deprivation effects are terminated during the critical period [144,145,146,147] and, though it is possible, there is less chance of recovery if not treated until adulthood [148]. In addition to pharmacological interventions, which at present lack clinical feasibility [149], a promising experimental treatment recently described in the rodent model involves environmental enrichment, which has been shown to rescue the visual acuity of amblyopic rats in adulthood if there is damage to one eye [150].
Binocular vision requires integration of the inputs from both eyes onto neurons in the major visual brain centres. There is a challenge to understanding how these distinct inputs map the binocular field because the ipsilateral projection maps in the opposite direction relative the contralateral one. Most of the known cues which guide the development of visual mapping in the brain relate to the contralateral eye only, with little known about ipsilateral mapping. Animal models, especially in cat and rodents, have been used to study both normal and abnormal integration of the two eyes and to elucidate the mechanisms underpinning this process. There is also the capacity for further work in animal models, especially with regard to possible interventions for disorders of binocular integration such as amblyopia.
We are grateful to Marissa Penrose for figure production. JR is a National Health and Medical Research Council Australia Senior Research Fellow.
The TSP is one of the most intensively investigated optimization problems and often treated as the prototypical combinatorial optimization problem that has provided much motivation for design of new search algorithms, development of complexity theory, and analysis of solution space and search space [1, 2]. The TSP is defined as a complete graph
Under this definition, the salesman wants to know what all best alternative tours are available. Finding all optimal solutions is the essential requirement for an optimization search algorithm. In practice, knowledge of multiple optimal solutions is extremely helpful, providing the decision-maker with multiple options, especially when the sensitivity of the objective function to small changes in its variables may be different at the alternative optimal points. Obviously, this TSP definition is elegantly simple but full of challenge to the optimization researchers and practitioners.
Optimization has been a fundamental tool in all scientific and engineering areas. The goal of optimization is to find the best set of the admissible conditions to achieve our objective in our decision-making process. Therefore, the fundamental requirement for an optimization search algorithm is to find all optimal solutions within a reasonable amount of computing time. The focus of computational complexity theory is to analyze the intrinsic difficulty of an optimization problem and the asymptotic property of a search algorithm to solve it. The complexity theory attempts to address this question: “How efficient is a search algorithm for a particular optimization problem, as the number of variables gets large?”
The TSP is known to be NP-hard [2, 3]. The problems in NP-hard class are said to be intractable because these problems have no asymptotically efficient algorithm, even the seemingly “limitless” increase of computational power will not resolve their genuine intractability. The intrinsic difficulty of the TSP is that the solution space increases exponentially as the problem size increases, which makes the exhaustive search infeasible. When a TSP instance is large, the number of possible tours in the solution space is so large to forbid an exhaustive search for the optimal tours. A feasible search algorithm for the TSP is one that comes with a guarantee to find all best tours in time at most proportional to
Do we need to explore all the possibilities in the solution space to find the optimal solutions? Imagine that searching for the optimal solution in the solution space is like treasure hunting. We are trying to hunt for a hidden treasure in the whole world. If we are “blindfolded” without any guidance, it is a silly idea to search every single square inch of the extremely large space. We may have to perform a random search process, which is usually not effective. However, if we are able to use various clues to locate the small village where the treasure was placed, we will then directly go to that village and search every corner of the village to find the hidden treasure. The philosophy behind this treasure-hunting case for optimization is that: if we do not know where the optimal point is in the solution space, we can try to identify the small region that contains the optimal point and then search that small region thoroughly to find that optimal point.
Optimization researchers have developed many optimization algorithms to solve the TSP. Deterministic approaches such as exhaustive enumeration and branch-and-bound can find exact optimal solutions, but they are very expensive from the computational point of view. Stochastic optimization algorithms, such as simple heuristic local search, Evolutionary Algorithms, Particle Swarm Optimization and many other metaheuristics, can find hopefully a good solution to the TSP [1, 4, 5, 6, 7]. The stochastic search algorithms trade in guaranteed correctness of the optimal solution for a shorter computing time. In practice, most stochastic search algorithms are based on the heuristic local search technique [8]. Heuristics are functions that help us decide which one of a set of possible solutions is to be selected next [9]. A local search algorithm iteratively explores the neighborhoods of solutions trying to improve the current solution by a local change. However, the scope of local search is limited by the neighborhood definition. Therefore, heuristic local search algorithms are locally convergent. The final solution may deviate from the optimal solution. Such a final solution is called a locally optimal solution, denoted as
This chapter studies the TSP from a novel perspective and presents a new search algorithm for the TSP. This chapter is organized in the following sections. Section 2 presents the ABSS algorithm for the TSP. Section 3 describes the important data structure that is a critical player in solving the TSP. Section 4 discusses the nature of heuristic local search algorithm and introduces the concept of solution attractor. Section 5 describes the global optimization features of the ABSS. Section 6 discusses the computational complexity of the ABSS. Section 7 concludes this chapter.
Figure 1 presents the Attractor-Based Search System (ABSS) for the TSP. In this algorithm, Q is a TSP instance with the edge matrix E and cost matrix C. At beginning of search, the matrix E is initialized by assigning zeros to all elements of E. The function
The ABSS algorithm for the TSP.
Figure 2 uses a 10-node instance as an example to illustrate how the ABSS works. We randomly generate
A simple example of the ABSS algorithm. (a) Union of the edge configurations of 60 random initial tours, (b) four distinct locally optimal tours, (c) union of the edge configurations of the 60 locally optimal tours, (d) the depth-first tree search on the edge configuration of E, and (e) five tours found in E.
In all experiments mentioned in the chapter, we generate symmetric TSP instances with n nodes. The element
Usually the edge matrix E is not necessary to be included in the TSP definition because the TSP is a complete graph. However, the edge matrix E is an effective data structure that can help us understand the search behavior of a local search system. General local search algorithm may not require much problem-specific knowledge in order to generate good solutions. However, it may be unreasonable to expect a search algorithm to be able to solve any problem without taking into account the data structure and properties of the problem at hand.
To solve a problem, the first step is to create a manipulatable description of the problem itself. For many problems, the choice of data structure for representing a solution plays a critical role in the analysis of search behavior and design of new search algorithm. For the TSP, a tour can be represented by an ordered list of nodes or an edge configuration of a tour in the edge matrix E, as illustrated in Figure 3. The improvement of the current tour represents the change in the order of the nodes or the edge configuration of a tour.
Two representations of a tour: an ordered list of nodes and an edge configuration of a tour.
Observing the behavior of search trajectories in a local search system can be quite challenging. The edge matrix E is a natural data structure that can help us trace the search trajectories and understand the dynamics of a local search system. An edge
The changes of the edge configuration of the matrix E represent the transformations of the search trajectories in a local search system. When all search trajectories reach their end points, the final edge configuration of E represents the final state of the local search system. For a tour
Then the hit-frequency value
When K search trajectories reach their end points, the value
Figure 4 illustrates a simple example of visualization showing the convergent behavior of 100 search trajectories for a 50-node instance. Figure 4(a) shows the image of the edge configurations of 100 random initial tours. Since each element of E has equal chance to be hit by these initial tours, almost all elements are hit by these initial tours, and all elements have very low
Visualization of the convergent dynamics of local search system. (a) the image of the edge configurations of 100 initial tours, (b) and (c) the images of edge configurations when the search trajectories are at 2000th and 5000th iteration, respectively.
This simple example has great explanatory power about the global dynamics of the local search system for the TSP. As search trajectories continue searching, the number of edges hit by them becomes smaller and smaller, and better edges are hit by more and more search trajectories. This edge-convergence phenomenon means that all search trajectories are moving closer and closer to each other, and their edge configurations become increasingly similar. This phenomenon describes the globally asymptotic behavior of the local search system.
It is easily verified that under certain conditons, a local search system is able to find the set of the globally optimal tours
However, the required search effort may be very huge – equivalent to enumerating all tours in the solution space. Now one question for the ABSS is “How many search trajectories in the search system do we need to find all globally optimal tours?” The matrix E consists of
Heuristic local search is based on the concept of neighborhood search. A neighborhood of a solution
The behavior of a local search trajectory can be understood as a process of iterating a search function
Therefore, a search trajectory will reach an end point (a locally optimal point) and will stays at this point forever.
In a heuristic local search algorithm, there is a great variety of ways to construct initial tour, choose candidate moves, and define criteria for accepting candidate moves. Most heuristic local search algorithms are based on randomization. In this sense, a heuristic local search algoorithm is a randomized system. There are no two search trajectories that are exactly alike in such a search system. Different search trajectories explore different regions of the solution space and stop at different final points. Therefore, local optimality depends on the initial points, the neighborhood function, randomness in the search process, and time spent on search process. On the other hand, however, a local search algorithm essentially is deterministic and not random in nature. If we observe the motion of all search trajectories, we will see that the search trajectories go towards the same direction, move closer to each other, and eventually converge into a small region in the solution space.
Heuristic local search algorithms are essentially in the domain of dynamical systems. A heuristic local search algorithm is a discrete dynamical system, which has a solution space S (the state space), a set of times T (search iterations), and a search function
The attractor theory of dynamical systems is a natural paradigm that can be used to describe the search behavior of a heuristic local search system. The theory of dynamical systems is an extremely broad area of study. A dynamical system is a model of describing the temporal evolution of a system in its state space. The goal of dynamical system analysis is to capture the distinctive properties of certain points or regions in the state space of a given dynamical system. The theory of dynamical systems has discovered that many dynamical systems exhibt attracting behavior in the state space [14, 15, 16, 17, 18, 19, 20, 21, 22]. In such a system, all initial states tend to evolve towards a single final point or a set of points. The term attractor is used to describe this single point or the set of points in the state space. The attractor theory of dynamical systems describes the asymptotic behavior of typical trajectories in the dynamical system. Therefore, the attractor theory provides the theoretical foundation to study the search behavior of a heuristic lcoal search system.
In a local search system for the TSP, no matter where we start a search trajectory in the solution space, all search trajectories will converge to a small region in the solution space for a unimodal TSP instance or h small regions for a h-model TSP. We call this small region a solution attractor of the local search system for a given TSP instance, denoted as A. Therefore, the solution attractor of a local search system for the TSP can be defined as an invariant set
The concept of solution attractor of local search system describes where the search trajectories actually go and where their final points actually stay in the solution space. Figure 5 visually summarizes the concepts of search trajectories and solution attractors in a local search system for a multimodal optimization problem, describing how search trajectories converge and how solution attractors are formed. In summary, let
Convexity, i.e.
Centrality, i.e. the globally optimal tour
Invariance, i.e.
Inreducibility, i.e. the solution attractor A contains a limit number of invariant locally optimal tours.
Illustration of the concepts of serch trajectories and solution attractors in a local search system for a multimodal optimization problem.
A search trajectory in a local search system changes its edge configuration during the search according to the objective function
The grouping of the edges in E when all search trajectories reach their end points.
In the ABSS, we use K search trajectories in the local search phase. Different sets of K search trajectories will generate different final edge configuration of E. Suppose that, we start the local search from a set of K initial points and obtain a edge configuration
The convergence of the search trajectories can be measured by the change in the edge configuration of the matrix E. In the local search process, search trajectories collect all available topology information about the quality of the edges from their search experience and record such information in the matrix E. The changes in the edge configuration of E fully reflects the real search evolution of the search system. A state of convergence is achieved once no any more local search trajectory can change the edge configuration of E. For a set of search trajectories to be converging, they must be getting closer and closer to each other, that is, their edge configurations become increasingly similar. As a result, the edge configurations of the search trajectories converge to a small set of edges that contains all globally superior edges and some bad edges. Let W denote total number of edges in E,
For a given TSP instance, W is a constant value
Our experiments confirmed this inference about
The αt, βt and γt curves with search iterations.
In summary, we assume a TSP instance Q has a solution space with
It contains all locally optimal tours;
It contains a complete collection of solution attractors, i.e.
It contains a complete collection of G-edges, i.e.
From this analysis, we can see that the edge matrix E is an extremely useful data structure that not only collcets the information about search trajectories, but also convert local search behavor of individual search trajectories into global search behavor of the search system. The global convergence and deterministic property of the search trajectories make the local search system always converge to the same solution attractors and the edge configurations of the search trajectories always converge to the same set of globally superior edges. The matrix E shows us clearly where the search trajectories go and where all locally optimal points are located. We found the village! However, it is still difficult to identify all G-edges among the globally superior edges. The ABSS uses the exhaustive search phase to find all tours in the solution attractor. Since the local search phase has significantly reduced the size of the search space for the exhaustive search phase, the complete search in the solution attractor becomes feasible.
The task of a global optimization system is to find all absolutely best solutions in the solution space. There are two major tasks performed by a global optimization system: (1) finding all globally optimal points in the solution space and (2) making sure that they are globally optimal. So far we do not have any effective and efficient global search algorithm to solve NP-hard combinatorial problems. We do not even have well-developed theory or analysis tool to help us design efficient algorithms to perform these two tasks. One critical question in global optimization is how to recognize the globally optimal solutions. Modern search algorithms lack practical criteria that decides when a locally optimal solution is a globally optimal one. What is the necessary and sufficient condition for a feasible point
The search system should be globally convergent.
The search system should be deterministic and have a rigorous guarantee for finding all globally optimal solutions without excessive computational burden.
The optimality criterion in the system must be based on information on the global behavior of the search system.
The ABSS combines beautifully two crucial aspects in search: exploration and exploitation. In the local search phase, K search trajectories explore the full solution space to identify the globally superior edges, which form the edge configuration of the solution attractor. These K search trajectories are independently and invidually executed, and therefore they create and maintain diversity from beginning to the end. The local search phase is a randomized process due to randomization in the local search function
Each of the K search trajectories passes through many neighborhoods on its way to the final point. For any tour
That is, the solution attractor A is formed through the entire solution space S. The solution attractor A contains h unique minimal “convex” sets
We see that the matrix E plays a critical role to transform local search process of the individual search trajectories into a collective global search process of the system. Each time when a local search trajectory finds a better tour and updates the edge configuraton of E, the conditional distribution on the edges are updated. More values are attached to the globally superior edges, and bad edges are discarded. Let W be the complete set of the edges in E and
and
The “convexity” property of the solution attractor A allows the propagation of the minimum property of
Therefore the global convergence and deterministic property of the search trajectories in the local search phase make the ABSS always find the same set of globally optimal tours. We conducted several experiments to confirm this argument empirically. In our experiments, for a given TSP instance, the ABSS performed the same search process on the instance several times, each time using a different set of K search trajectories. The ABSS outputed the same set of the best tours in all trials.
Table 1 shows the results of two experiments. One experiment generated
Trial number | Number of tours in A | Range of tour cost | Number of best tours in A |
---|---|---|---|
1 | 6475824 | [3241, 4236] | 1 |
2 | 6509386 | [3241, 3986] | 1 |
3 | 6395678 | [3241, 4027] | 1 |
4 | 6477859 | [3241, 4123] | 1 |
5 | 6456239 | [3241, 3980] | 1 |
6 | 6457298 | [3241, 3892] | 1 |
7 | 6399867 | [3241, 4025] | 1 |
8 | 6423189 | [3241, 3924] | 1 |
9 | 6500086 | [3241, 3948] | 1 |
10 | 6423181 | [3241, 3867] | 1 |
1 | 8645248 | [69718, 87623] | 4 |
2 | 8657129 | [69718, 86453] | 4 |
3 | 8603242 | [69718, 86875] | 4 |
4 | 8625449 | [69718, 87053] | 4 |
5 | 8621594 | [69718, 87129] | 4 |
6 | 8650429 | [69718, 86978] | 4 |
7 | 8624950 | [69718, 86933] | 4 |
8 | 8679949 | [69718, 86984] | 4 |
9 | 8679824 | [69718, 87044] | 4 |
10 | 8677249 | [69718, 87127] | 4 |
Tours in constructed solution attractor A for
With current search technology, the TSP is an infeasible problem because it is not solvable in a reasonable amount of time. Faster computers will not help. A feasible search algorithm for the TSP is one that comes with a guarantee to find all best tours in time at most proportional to
The core idea of the ABSS is that, if we have to use exhaustive search to confirm the globally optimal points, we should first find a way to quickly reduce the effective search space for the exhaustive search. When a local search trajectory finds a better tour, we can say that the local search trajectory finds some better edges. It is an inclusive view. We also can say that the local search trajectory discards some bad edges. It is an exclusive view. The ABSS uses the exclusive strategy to conquer the TSP. The local search phase in the ABSS quickly prunes out large number of edges that cannot possibly be included in any of the globally optimal tours. Thus, a large useless area of the solution space is excluded. When the first edge is discarded by all K search trajectories,
Now an essential question is naturally raised: What is the relationship between the size of the constructed solution attractor and the size of the problem instance? Unfortunately, there is no theoretical analysis tool available in the literature that can be used to answer this question. We have to depend on empirical results to lend some insights. We conducted several experiments to observe the relationship between the size of the constructed solution attractor and the TSP instance size. Figure 8–10 show the results of one of our experiments. All other similar experiments reveal the same pattern. In this experiment, we generated 10 unimodal TSP instances in the size from 1000 to 10000 nodes with 1000-node increment. For each instance, the ABSS generated
The number of discarded edges at the end of local search phase.
Relationship between the size of the constructed solution attractor and instance size.
The b∗ values for different instance size n in our experiment.
In Figure 8, we can see that the search trajectories can quickly converge to a small set of edges. In the fixed-search-time case, about 60% of the edges were discarded by search trajectories for the 1000-node instance, but this percentage decreases as instance size increases. For the 10000-node instance, only about 46% of the edges are discarded. However, if we increase the local search time linearly when the instance size increases, we can keep the same percentage of discarded-edge for all instance sizes. In the varied-search-time-1 case, about 60% of the edges are abandoned for all different instance sizes. In the varied-search-time-2 case, this percentage increases to 68% for all instances. Higher percentage of abandoned edges means that majority of the branches are removed from the search tree.
Figure 9 shows the number of tours exist in the constructed solution attractor for these instances. All curves in the chart appear to be linear relationship between the size of constructed solution attractor and the size of the problem instance, and the varied-search-time curves have much flatter slope because longer local search time makes a smaller constructed solution attractor. Figures 8 and 9 indicate that the search trajectories in the local search phase can effectively and efficiently reduce the search space for the exhaustive search, and the size of the solution attractor increases linearly as the size of the problem instance increases. Therefore, the local search phase in the ABSS is an efficiently asymptotical search process that produces an extremely small search space for further exhaustive search.
The completely searching of the constructed solution attractor is delegated to the exhaustive search phase. This phase may still need to examine tens or hundreds of millions of tours but nothing a computer processor cannot handle, as opposed to the huge number of total possibilities in the solution space. The exhaustive search phase can find the exact globally optimal tours for the problem instance after a limited number of search steps.
The exhaustive search phase can use any enumerative technique. However, the edge configuration of E can be easily searched by the depth-first tree search algorithm. One of the advantages of depth-first tree search is less memory requirement since only the nodes on the current path are stored. When using tree-search algorithm, we usually use branching factor, average branching factor, or effective branching factor to measure the computing complexity of the algorithm [30, 31, 32, 33]. In the data structure of search tree, the branching factor is the number of successors generated by a given node. If this value is not uniform, an average branching factor can be calculated. An effective branching factor
where n is the size of the TSP instance, representing the depth of the tree, and N is total number of nodes generated in the tree from the origin node. In our experiments, the tree-search process always starts from node 1 (the first row of E). N is total number of nodes that are processed to construct all valid tours and incomplete (therefore abandoned) tours in E. N does not count the node 1 (the origin node), but includes the node 1 as the end node of a valid tour. We use Figure 2(d) as an example. The depth-first search process searches the edge configuration of E and will generate
Therefore, the ABSS is a simple algorithm that increases in computational difficulty polynomially with the size of the TSP. In the ABSS, the objective pursued by the local search phase is “quickly eliminating unnecessary search space as much as possible.” It can provide an answer to the question “In which small region of the solution space is the optimal solution located?” in time of
Advances in computational techniques on the determination of the global optimum for an optimization problem can have great impact on many scientific and engineering fields. Although both the TSP and heuristic local search algorithms have huge literature, there is still a variety of open problems. Numerous experts have made huge advance on the TSP research, but two fundamental questions of the TSP remain essentially open: “How can we find the optimal tours in the solution space, and how do we know they are optimal?”
The P-vs-NP problem is about how fast we can search through a huge number of solutions in the solution space [34]. Do we ever need to explore all the possibilities of the problem to find the optimal one? Actually, the P-vs-NP problem asks whether, in general, we can find a method that completely searches only the region where the optimal points are located [34, 35, 36]. Most people believe
The ABSS is designed for the TSP. However, the concepts and formulation behind the search algorithm can be used for any combinatorial optimization problem requiring the search of a node permutation in a graph.
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\\n"}]'},components:[{type:"htmlEditorComponent",content:'Copyright is the term used to describe the rights related to the publication and distribution of original Works. Most importantly from a publisher's perspective, copyright governs how Authors, publishers and the general public can use, publish, and distribute publications.
\n\nIntechOpen only publishes manuscripts for which it has publishing rights. This is governed by a publication agreement between the Author and IntechOpen. This agreement is accepted by the Author when the manuscript is submitted and deals with both the rights of the publisher and Author, as well as any obligations concerning a particular manuscript. However, in accepting this agreement, Authors continue to retain significant rights to use and share their publications.
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I am also a member of the team in charge for the supervision of Ph.D. students in the fields of development of silicon based planar waveguide sensor devices, study of inelastic electron tunnelling in planar tunnelling nanostructures for sensing applications and development of organotellurium(IV) compounds for semiconductor applications. I am a specialist in data analysis techniques and nanosurface structure. 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After obtaining a Master's degree in Mechanical Engineering, he continued his PhD studies in Robotics at the Vienna University of Technology. Here he worked as a robotic researcher with the university's Intelligent Manufacturing Systems Group as well as a guest researcher at various European universities, including the Swiss Federal Institute of Technology Lausanne (EPFL). During this time he published more than 20 scientific papers, gave presentations, served as a reviewer for major robotic journals and conferences and most importantly he co-founded and built the International Journal of Advanced Robotic Systems- world's first Open Access journal in the field of robotics. Starting this journal was a pivotal point in his career, since it was a pathway to founding IntechOpen - Open Access publisher focused on addressing academic researchers needs. Alex is a personification of IntechOpen key values being trusted, open and entrepreneurial. Today his focus is on defining the growth and development strategy for the company.",institutionString:null,institution:{name:"TU Wien",country:{name:"Austria"}}},{id:"19816",title:"Prof.",name:"Alexander",middleName:null,surname:"Kokorin",slug:"alexander-kokorin",fullName:"Alexander Kokorin",position:null,profilePictureURL:"https://mts.intechopen.com/storage/users/19816/images/1607_n.jpg",biography:"Alexander I. Kokorin: born: 1947, Moscow; DSc., PhD; Principal Research Fellow (Research Professor) of Department of Kinetics and Catalysis, N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, Moscow.\r\nArea of research interests: physical chemistry of complex-organized molecular and nanosized systems, including polymer-metal complexes; the surface of doped oxide semiconductors. He is an expert in structural, absorptive, catalytic and photocatalytic properties, in structural organization and dynamic features of ionic liquids, in magnetic interactions between paramagnetic centers. The author or co-author of 3 books, over 200 articles and reviews in scientific journals and books. He is an actual member of the International EPR/ESR Society, European Society on Quantum Solar Energy Conversion, Moscow House of Scientists, of the Board of Moscow Physical Society.",institutionString:null,institution:{name:"Semenov Institute of Chemical Physics",country:{name:"Russia"}}},{id:"62389",title:"PhD.",name:"Ali Demir",middleName:null,surname:"Sezer",slug:"ali-demir-sezer",fullName:"Ali Demir Sezer",position:null,profilePictureURL:"https://mts.intechopen.com/storage/users/62389/images/3413_n.jpg",biography:"Dr. Ali Demir Sezer has a Ph.D. from Pharmaceutical Biotechnology at the Faculty of Pharmacy, University of Marmara (Turkey). He is the member of many Pharmaceutical Associations and acts as a reviewer of scientific journals and European projects under different research areas such as: drug delivery systems, nanotechnology and pharmaceutical biotechnology. Dr. Sezer is the author of many scientific publications in peer-reviewed journals and poster communications. Focus of his research activity is drug delivery, physico-chemical characterization and biological evaluation of biopolymers micro and nanoparticles as modified drug delivery system, and colloidal drug carriers (liposomes, nanoparticles etc.).",institutionString:null,institution:{name:"Marmara University",country:{name:"Turkey"}}},{id:"61051",title:"Prof.",name:"Andrea",middleName:null,surname:"Natale",slug:"andrea-natale",fullName:"Andrea Natale",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"100762",title:"Prof.",name:"Andrea",middleName:null,surname:"Natale",slug:"andrea-natale",fullName:"Andrea Natale",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:{name:"St David's Medical Center",country:{name:"United States of America"}}},{id:"107416",title:"Dr.",name:"Andrea",middleName:null,surname:"Natale",slug:"andrea-natale",fullName:"Andrea Natale",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:{name:"Texas Cardiac Arrhythmia",country:{name:"United States of America"}}},{id:"64434",title:"Dr.",name:"Angkoon",middleName:null,surname:"Phinyomark",slug:"angkoon-phinyomark",fullName:"Angkoon Phinyomark",position:null,profilePictureURL:"https://mts.intechopen.com/storage/users/64434/images/2619_n.jpg",biography:"My name is Angkoon Phinyomark. I received a B.Eng. degree in Computer Engineering with First Class Honors in 2008 from Prince of Songkla University, Songkhla, Thailand, where I received a Ph.D. degree in Electrical Engineering. My research interests are primarily in the area of biomedical signal processing and classification notably EMG (electromyography signal), EOG (electrooculography signal), and EEG (electroencephalography signal), image analysis notably breast cancer analysis and optical coherence tomography, and rehabilitation engineering. I became a student member of IEEE in 2008. During October 2011-March 2012, I had worked at School of Computer Science and Electronic Engineering, University of Essex, Colchester, Essex, United Kingdom. In addition, during a B.Eng. I had been a visiting research student at Faculty of Computer Science, University of Murcia, Murcia, Spain for three months.\n\nI have published over 40 papers during 5 years in refereed journals, books, and conference proceedings in the areas of electro-physiological signals processing and classification, notably EMG and EOG signals, fractal analysis, wavelet analysis, texture analysis, feature extraction and machine learning algorithms, and assistive and rehabilitative devices. I have several computer programming language certificates, i.e. Sun Certified Programmer for the Java 2 Platform 1.4 (SCJP), Microsoft Certified Professional Developer, Web Developer (MCPD), Microsoft Certified Technology Specialist, .NET Framework 2.0 Web (MCTS). I am a Reviewer for several refereed journals and international conferences, such as IEEE Transactions on Biomedical Engineering, IEEE Transactions on Industrial Electronics, Optic Letters, Measurement Science Review, and also a member of the International Advisory Committee for 2012 IEEE Business Engineering and Industrial Applications and 2012 IEEE Symposium on Business, Engineering and Industrial Applications.",institutionString:null,institution:{name:"Joseph Fourier University",country:{name:"France"}}},{id:"55578",title:"Dr.",name:"Antonio",middleName:null,surname:"Jurado-Navas",slug:"antonio-jurado-navas",fullName:"Antonio Jurado-Navas",position:null,profilePictureURL:"https://mts.intechopen.com/storage/users/55578/images/4574_n.png",biography:"Antonio Jurado-Navas received the M.S. degree (2002) and the Ph.D. degree (2009) in Telecommunication Engineering, both from the University of Málaga (Spain). He first worked as a consultant at Vodafone-Spain. From 2004 to 2011, he was a Research Assistant with the Communications Engineering Department at the University of Málaga. In 2011, he became an Assistant Professor in the same department. From 2012 to 2015, he was with Ericsson Spain, where he was working on geo-location\ntools for third generation mobile networks. Since 2015, he is a Marie-Curie fellow at the Denmark Technical University. 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