List of RefSeq genomic records inserted into the loci image generator database.
Abstract
Enzymes called proteases play important roles in the physiology of all living organisms and in the interaction of a parasite/symbiont with its host. Different types of peptidases act on specific substrates and are regulated by specific inhibitors. Ecotins, described firstly in Eschericchia coli, are inhibitors of serine peptidases (ISP) from S1A family including trypsin, chymotrypsin, neutrophil elastase, and cathepsin G. Ecotin-like inhibitors are present in parasites from Trypanosomatidae family, including Trypanosoma cruzi, the causative agent of Chagas’ disease. This chapter explores the evolutive origin of the T. cruzi TcISP2 and its possible interactions with proteins of the human immune system and in Chagas’ disease. The phylogenetic relationship of TcISP2 with trypanosomatids ISPs, comparative loci analysis among trypanosomatids, and the occurrence of bacteria endosymbionts in the group strongly suggest horizontal transfer as the main origin mechanism for trypanosomatids ISPs, followed by duplication events and losses that could explain its current genomic pattern. The relationship of TcISP2 with the vertebrate host immune system can be inferred by its antigenicity in Chaga’s disease murine model, presenting high antibody titer after 60 days post-infection, which could indicate the inhibition of TcISP2 activity associated with chronic phase of the Chaga’s disease.
Keywords
- Trypanosoma cruzi
- ecotin
- serine-protease inhibitor
- recombinant protein
- neutrophil elastase
1. Introduction
Chagas disease, despite the success of public policies for vector control, still has a worrying annual incidence in Brazil, especially in the precarious and growing frontiers of the legal Amazon [1]. The etiologic agent of Chagas’ disease is the protozoan
In bacteria, especially those that invade arthropod and vertebrate tissue, a growing variety of studies indicates that ecotin is a key factor in defense against the immunological barriers of infected organisms. Recent evidence indicates that ISPs synthesized by
1.1 General taxonomic aspects and life cycle of Trypanosoma cruzi
Kinetoplastida is a class of unicellular eukaryotes characterized by the presence of the kinetoplast, a feature formed by circular concatenated DNA molecules (kDNA) inside a solitary mitochondrion [10]. Trypanosomatida is an order of kinetoplastids composed of obligatory parasites of invertebrates, plants, and all classes of vertebrates [11, 12]. This order includes genera that are exclusive arthropod parasites, such as
Species in the
The heteroxenous life cycle in trypanosomatids may have an evolutionary history beginning before the start of the tertiary period, but the overall Kinetoplastida phylogeny is still filled with uncertainty, even more so among trypanosomatids [21]. The existence of bacterial endosymbionts in the group is of marked interest to researchers, possibly being related to the transition from free to parasitic life cycles or being involved in lateral gene transfers between bacteria and eukaryotes [22]. Trypanosomatids have polycistronic DNA transcription which tends to keep coding sequences conserved in contiguous groups, resulting in multiple gene loci being preserved between different species [23].
1.2 Serine protease inhibitors: ecotins and Trypanosomatida ISPs
Ecotins are serine protease inhibitors initially described in
Trypanosomatids are the only eukaryotes with genes coding for ecotin analogs, described for the first time in 2005 by Ivens et al. in
An ISP2 homolog has been found in
The evolution of the genes encoding for trypanosomatid ISPs can shed light not only on the group’s evolutionary history but also on the overall importance of this enzyme for future researchers. In the next few pages, we show evidence for a common ancestry of ISPs in extant trypanosomatids using both phylogenetic inferences and a novel method for gene loci analysis. Also, we demonstrate the antigenicity of
2. Methodology
2.1 Phylogenetic methods
Amino acid sequences of ISPs were obtained from the NCBI database (
For the loci viewer project database input, complete genomic sequences for loci analysis were obtained from the same database using tBLASTn, a tool that takes amino acid sequences as input and searches for corresponding nucleotide sequences, with the search limited to RefSeq annotated genomes [39]. Data was input and manipulated into custom software developed for the author’s master thesis [43]. The complete list of sequences with respective web links and NCBI GenBank IDs is listed in Table 1. After data input was completed, the database was manually manipulated using SQL queries to identify close genes to the left or right of the ecotin homologs in various species, aided by the visual map generated showing that ISPs occurred in two different loci around 50 kbp apart in most species. One of these genes is a putative katanin-encoding gene, and the other three are conserved hypothetical protein-encoding genes that were called CHP1, 2, and 3. Using the
2.2 Purification of recombinant TcISP2 (TcISP2r) from Escherichia coli
The construction of recombinant plasmid to express TcISP2r in
2.3 Obtention of sera from murine model of acute and chronic Chagas’ disease
The murine model of acute and chronic Chagas’ disease is already established in the Chagas Disease laboratory of the Instituto Dante Pazzanese. For the proposed study, a total of 8 male mice, Black-C57, 20 days old, were inoculated intraperitoneally with 1x104 parasites per milliliter (mL) in 0.9% saline, pH 6.0, and three animals were used as negative controls.
After infection, 200 to 400 uL of blood samples were collected from the mice on days 7, 15 (acute phase of infection), 30, 45, and 60 (chronic phase of infection) after infection, through submandibular vein puncture, and centrifuged at 1200 x g for 10 minutes at 25°C, to obtain the serum, which was stored at −20°C until analysis. On day 60, the mice were euthanized in a chamber with cotton soaked in Sevoflurane (C4H3F7O), following cervical dislocation to ensure death. After euthanasia, a necropsy of brain tissue, liver, spleen, kidneys, and heart was performed. The heart was washed with saline and cardiac tissue and saline lavage were stored at −20°C. The euthanasia method was performed according to the recommendations of the Brazilian guide to good practices for the euthanasia of animals established by the consultants of the Ethics, Bioethics and Animal Welfare Committee of the Federal Council of Veterinary Medicine (CEBEA/CFMV). All handling of the animals was carried out in accordance with the Brazilian guideline for the care and use of animals for scientific and educational purposes (DBCA), of the National Council for the Control of Animal Experimentation (CONCEA) (https://www.sbcal.org.br/download/download?ID_DOWNLOAD=58). The protocol was approved by the Animal Research Ethics Committee of the Instituto Dante Pazzanese (Registration number 020/2019).
2.4 Standardization of TcISP2 enzyme-linked immunosorbent assay (ELISA)
To perform the indirect ELISA test for antibodies against TcISP2r, the binding efficiency of the recombinant protein was initially verified in 96-well plates with low, medium, and high binding capacity (Figure 2). Each of the plaque types was sensitized with 1.0, 2.0, and 5 μg of TcISP2r protein diluted in 0.2 M carbonate-bicarbonate buffer, pH 9.2. The plates were filled with 100 μL of buffer containing 1, 2, or 5 μg of protein and kept in the refrigerator for 16 hours. Subsequently, the plates were washed with 20 mM of phosphate buffer pH 7.4 and 0.05% of tween 20 and subsequently incubated with blocking solution (5% skim milk, 20 mM of phosphate buffer pH 7.4 and 0, 05% tween 20) for 30 minutes. Then, the blocking solution was removed and different dilutions of the anti-histidine monoclonal antibody (1 ug, 0.1 ug, and 0.05 ug/mL) produced in mice (Invitrogen) in 50 uL of blocking solution were added per well. Serial dilutions in the order of 2 of the anti-histidine antibodies were also made in columns A to H, followed by incubation for 2 hours at room temperature. After washing three times with 20 mM of phosphate buffer pH 7.4 and 0.05% tween 20, 0.1 ug/mL of the anti-mouse IgG second antibody, bound with alkaline phosphatase, was added to 50 uL of blocking solution and incubated for 1 hour at room temperature. The plate was then washed 3 times with 20 mM phosphate buffer pH 7.4 and 0.05% tween 20 and 2 times with 20 mM phosphate buffer pH 7.4 without tween 20. Reactions were developed with PNPP substrate for alkaline phosphatase (Invitrogen), according to the manufacturer’s instructions and the plates were incubated for 30 minutes at room temperature and read in a spectrophotometer at a wavelength of 405 nm.
ELISA tests were performed in 96-well plates with medium binding capacity and three concentrations of TcISP2r protein (2, 5, and 10 μg). Recombinant protein binding was carried out for 16 hours in 100 uL of 0.1 M carbonate-bicarbonate buffer pH 9.2, in the refrigerator. Subsequently, the plates were washed with 20 mM of phosphate buffer pH 7.4 and 0.05% of tween 20 and subsequently incubated with blocking solution (5% skim milk, 20 mM of phosphate buffer pH 7.4 and 0, 05% tween 20) for 30 minutes. Then, the blocking solution was removed and 50 uL of serial dilutions of serum from 3 mice collected at 7-, 15-, and 60-days post-infection were added to the wells and the plate incubated for 2 hours at room temperature. After three washes with 20 mM of phosphate buffer pH 7.4 and 0.05% tween 20, 0.1 ug/mL of the anti-mouse IgG second antibody, bound with alkaline phosphatase, was added to 50 uL of blocking solution and incubated for 1 hour at room temperature. The plate was then washed 3 times with 20 mM phosphate buffer pH 7.4 and 0.05% tween 20 and 2 times with 20 mM phosphate buffer pH 7.4 without tween 20. Reactions were developed with PNPP substrate for alkaline phosphatase (Invitrogen), according to the manufacturer’s instructions and the plates were incubated for 30 minutes at room temperature and read in a spectrophotometer at a wavelength of 405 nm.
3. Results and discussion
3.1 Phylogenetic inferences and TcISP2 origin and role in Chagas’ disease
Maximum likelihood phylogenetic inference resulted in the tree represented in Figure 3, with
Using the loci image generation software described in detail in the author’s master thesis [43] resulted in the images in Figures 4 and 5, showing the full chromosomes and a zoomed-in area of interest respectively. Figure 4 is only useful for comparing
The images show up to five ecotin homologs in various
We know ISPs came from bacteria by horizontal gene transfer in Kinetoplastida because they appear in no other eukaryotes. The unanswered question is “how.” Looking at Figures 4 and 5 and keeping the cladogram in Figure 3 in mind, we can form a hypothesis for how trypanosomatids acquired ecotin homologs. The next paragraph is speculative, but given the evidence, it probably is not too far off-base.
The ancestor of all trypanosomatids either participated in multiple lateral gene transfers with ecotin-possessing bacteria or this event occurred only once and was followed by multiple gene duplications. If multiple gene transfers occurred, they probably happened no more than three times for ISPs 1, 2, and 3, and the additional ISP2 and ISP3 copies carried by
The preservation of ISP2 in almost all species is an interesting fact and makes sense given the ample evidence of its importance against hosts’ immune systems. Another interesting fact is that
These speculations are given to encourage further research. As tempting as it is to affirm their validity, our data set is very limited in scope and of very poor quality in some cases making bold affirmations. Automated genomic annotation can only go so far, and some of these sequences have errors, omissions, and other problems. Looking closely at the
One thing this work clearly shows without a doubt is the ubiquity of large amounts of unreviewed genomic data online. The amount of retrievable information at very little monetary cost and using free-to-use bioinformatics tools is huge, and in this world of big data and exponentially falling sequencing costs, this fact will become more obvious as time passes. The next generation of budding biologists may well have to learn to program before they learn the names of all the plant and animal families.
3.2 TcISP2 is immunogenic in mice with chronic infection
To verify the immunogenicity of the recombinant form of the TcISP2 protein produced in
To confirm the infection of mice with the Y strain of
Serum from mice infected by
The ELISA test revealed antibodies against TcISP2 in serum samples from
According to Faria et al. [33], ISPs are responsible for inhibiting the neutrophil elastase present in macrophages, through the toll-like receptor 4. Thus, cells with phagocytic activity can be used by the protozoan for their proliferation and escape from the immune system. In Chagas’ disease, macrophages are infected and carry the parasite into tissues. The phagocytic action of macrophages is more relevant in tissues compared to other professional phagocytic cells, due to their ability to migrate from the bloodstream to different tissues and organs [51]. Thus, the TcISP2 can play an essential role in acute and chronic Chagas’ disease.
4. Conclusions
Ecotin, a serine peptidase inhibitor (ISP), found first in
Acknowledgments
This work was funded by Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) (Grant number 2016/14514-4; and by UFABC. MMF and CMS were the recipient of a Master’s scholarship from CAPES.
Additional information
Parts of this book chapter were initially presented in the Master thesis of Max Mario Fuhlendorf available on the UFABC library platform, titled Loci image generator and the evolution of trypanosomatid ecotin: customized software as a tool for evolutionary analysis, 2018, Programa de pós-graduação em Evolução e Diversidade. The thesis has not been peer-reviewed and published.
References
- 1.
Aguilar VHM. Reflections on Chagas disease in the Amazon. Memórias do Instituto Oswaldo Cruz. 2022; 117 :e200409chgsa. Epub 20220520. DOI: 10.1590/0074-02760210409chgsa - 2.
Alvarez-Hernandez DA, Garcia-Rodriguez-Arana R, Ortiz-Hernandez A, Alvarez-Sanchez M, Wu M, Mejia R, et al. A systematic review of historical and current trends in Chagas disease. Therapeutic Advances in Infectious Disease. 2021; 8 :1-17. Epub 20210804. DOI: 10.1177/20499361211033715 - 3.
de Sousa PH, Scofield A, Junior PSB, Lira Dos Santos D, de Sousa Siqueira J, Chaves JF, et al. Chagas disease in urban and peri-urban environment in the Amazon: Sentinel hosts, vectors, and the environment. Acta Tropica. 2021; 217 :105858. Epub 20210212. DOI: 10.1016/j.actatropica.2021.105858 - 4.
Sarquis O, Carvalho-Costa FA, Toma HK, Georg I, Burgoa MR, Lima MM. Eco-epidemiology of Chagas disease in northeastern Brazil: Triatoma brasiliensis, T. pseudomaculata and Rhodnius nasutus in the sylvatic, peridomestic and domestic environments. Parasitology Research. 2012; 110 (4):1481-1485. Epub 20111007. DOI: 10.1007/s00436-011-2651-6 - 5.
Barbosa RL, Dias VL, Pereira KS, Schmidt FL, Franco RM, Guaraldo AM, et al. Survival in vitro and virulence of Trypanosoma cruzi in acai pulp in experimental acute Chagas disease. Journal of Food Protection. 2012; 75 (3):601-606. Epub 2012/03/14. DOI: 10.4315/0362-028X.JFP-11-233 - 6.
Brum-Soares LM, Xavier SS, Sousa AS, Borges-Pereira J, Ferreira JM, Costa IR, et al. Morbidity of Chagas disease among autochthonous patients from the Rio Negro microregion, state of Amazonas. Revista da Sociedade Brasileira de Medicina Tropical. 2010; 43 (2):170-177. Epub 2010/05/14. Morbidade da doenca de Chagas em pacientes autoctones da microrregiao do Rio Negro, Estado do Amazonas. DOI: 10.1590/s0037-86822010000200013 - 7.
Santos V, Meis J, Savino W, Andrade JAA, Vieira J, Coura JR, et al. Acute Chagas disease in the state of Para, Amazon region: Is it increasing? Memórias do Instituto Oswaldo Cruz. 2018; 113 (5):e170298. Epub 20180507. DOI: 10.1590/0074-02760170298 - 8.
Chung CH, Goldberg AL. Purification and characterization of protease so, a cytoplasmic serine protease in Escherichia coli. Journal of Bacteriology. 1983; 154 (1):231-238. Epub 1983/04/01. DOI: 10.1128/jb.154.1.231-238.1983 - 9.
Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, et al. The genome of the kinetoplastid parasite, Leishmania major. Science. 2005; 309 (5733):436-442. Epub 2005/07/16. DOI: 10.1126/science.1112680 - 10.
Kaufer A, Ellis J, Stark D, Barratt J. The evolution of trypanosomatid taxonomy. Parasites & Vectors. 2017; 10 (1):287. Epub 2017/06/10. DOI: 10.1186/s13071-017-2204-7 - 11.
Borghesan TC, Ferreira RC, Takata CS, Campaner M, Borda CC, Paiva F, et al. Molecular phylogenetic redefinition of Herpetomonas (Kinetoplastea, Trypanosomatidae), a genus of insect parasites associated with flies. Protist. 2013; 164 (1):129-152. Epub 20120829. DOI: 10.1016/j.protis.2012.06.001 - 12.
Borges AR, Engstler M, Wolf M. 18S rRNA gene sequence-structure phylogeny of the Trypanosomatida (Kinetoplastea, Euglenozoa) with special reference to Trypanosoma. European Journal of Protistology. 2021; 81 :125824. Epub 2021/08/06. DOI: 10.1016/j.ejop.2021.125824 - 13.
Dollet M, Sturm NR, Campbell DA. The internal transcribed spacer of ribosomal RNA genes in plant trypanosomes (Phytomonas spp.) resolves 10 groups. Infection, Genetics and Evolution. 2012; 12 (2):299-308. Epub 2011/12/14. DOI: 10.1016/j.meegid.2011.11.010 - 14.
Sturm NR, Dollet M, Lukes J, Campbell DA. Rational sub-division of plant trypanosomes (Phytomonas spp.) based on minicircle conserved region analysis. Infection, Genetics and Evolution. 2007; 7 (5):570-576. Epub 2007/05/15. DOI: 10.1016/j.meegid.2007.04.002 - 15.
de Souza SSA, Catta-Preta CM, Alves JMP, Cavalcanti DP, Teixeira MMG, Camargo EP, et al. Expanded repertoire of kinetoplast associated proteins and unique mitochondrial DNA arrangement of symbiont-bearing trypanosomatids. PLoS One. 2017; 12 (11):e0187516. Epub 2017/11/14. DOI: 10.1371/journal.pone.0187516 - 16.
Motta MCM, Catta-Preta CMC. Electron microscopy techniques applied to symbiont-harboring Trypanosomatids: The Association of the Bacterium with host organelles. Methods in Molecular Biology. 2020; 2116 :425-447. Epub 2020/03/30. DOI: 10.1007/978-1-0716-0294-2_26 - 17.
Fraga J, Fernandez-Calienes A, Montalvo AM, Maes I, Deborggraeve S, Buscher P, et al. Phylogenetic analysis of the Trypanosoma genus based on the heat-shock protein 70 gene. Infection, Genetics and Evolution. 2016; 43 :165-172. Epub 2016/05/18. DOI: 10.1016/j.meegid.2016.05.016 - 18.
Rey L. Parasitologia. 4th ed. Rio de Janeiro: Guanabara Koogan; 2008 - 19.
Tyler KM, Engman DM. The life cycle of Trypanosoma cruzi revisited. International Journal for Parasitology. 2001; 31 (5-6):472-481. Epub 2001/05/04. DOI: 10.1016/s0020-7519(01)00153-9 - 20.
Hendriks E, van Deursen FJ, Wilson J, Sarkar M, Timms M, Matthews KR. Life-cycle differentiation in Trypanosoma brucei: Molecules and mutants. Biochemical Society Transactions. 2000; 28 (5):531-536. Epub 2000/10/25. DOI: 10.1042/bst0280531 - 21.
Votypka J, d'Avila-Levy CM, Grellier P, Maslov DA, Lukes J, Yurchenko V. New approaches to systematics of Trypanosomatidae: Criteria for taxonomic (Re)description. Trends in Parasitology. 2015; 31 (10):460-469. Epub 2015/10/05. DOI: 10.1016/j.pt.2015.06.015 - 22.
Alves JM, Klein CC, da Silva FM, Costa-Martins AG, Serrano MG, Buck GA, et al. Endosymbiosis in trypanosomatids: The genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evolutionary Biology. 2013; 13 :190. Epub 2013/09/11. DOI: 10.1186/1471-2148-13-190 - 23.
Jackson AP. Genome evolution in trypanosomatid parasites. Parasitology. 2015; 142 (Suppl. 1):S40-S56. Epub 2014/07/30. DOI: 10.1017/S0031182014000894 - 24.
McGrath ME, Gillmor SA, Fletterick RJ. Ecotin: Lessons on survival in a protease-filled world. Protein Science. 1995; 4 (2):141-148. DOI: 10.1002/pro.5560040201 - 25.
Yang SQ , Wang CI, Gillmor SA, Fletterick RJ, Craik CS. Ecotin: A serine protease inhibitor with two distinct and interacting binding sites. Journal of Molecular Biology. 1998; 279 (4):945-957. DOI: 10.1006/jmbi.1998.1748 - 26.
Eggers CT, Murray IA, Delmar VA, Day AG, Craik CS. The periplasmic serine protease inhibitor ecotin protects bacteria against neutrophil elastase. The Biochemical Journal. 2004; 379 (Pt 1):107-118. Epub 2004/01/07. DOI: 10.1042/BJ20031790 - 27.
Eggers CT, Wang SX, Fletterick RJ, Craik CS. The role of ecotin dimerization in protease inhibition. Journal of Molecular Biology. 2001; 308 (5):975-991. DOI: 10.1006/jmbi.2001.4754 - 28.
Jin L, Pandey P, Babine RE, Gorga JC, Seidl KJ, Gelfand E, et al. Crystal structures of the FXIa catalytic domain in complex with ecotin mutants reveal substrate-like interactions. The Journal of Biological Chemistry. 2005; 280 (6):4704-4712. Epub 2004/11/17. DOI: 10.1074/jbc.M411309200 - 29.
Seymour JL, Lindquist RN, Dennis MS, Moffat B, Yansura D, Reilly D, et al. Ecotin is a potent anticoagulant and reversible tight-binding inhibitor of factor Xa. Biochemistry. 1994; 33 (13):3949-3958. DOI: 10.1021/bi00179a022 - 30.
Eschenlauer SC, Faria MS, Morrison LS, Bland N, Ribeiro-Gomes FL, DosReis GA, et al. Influence of parasite encoded inhibitors of serine peptidases in early infection of macrophages with Leishmania major. Cellular Microbiology. 2009; 11 (1):106-120. Epub 20081029. DOI: 10.1111/j.1462-5822.2008.01243.x - 31.
Morrison LS, Goundry A, Faria MS, Tetley L, Eschenlauer SC, Westrop GD, et al. Ecotin-like serine peptidase inhibitor ISP1 of Leishmania major plays a role in flagellar pocket dynamics and promastigote differentiation. Cellular Microbiology. 2012; 14 (8):1271-1286. Epub 20120508. DOI: 10.1111/j.1462-5822.2012.01798.x - 32.
Ribeiro-Gomes FL, Moniz-de-Souza MC, Alexandre-Moreira MS, Dias WB, Lopes MF, Nunes MP, et al. Neutrophils activate macrophages for intracellular killing of Leishmania major through recruitment of TLR4 by neutrophil elastase. Journal of Immunology. 2007; 179 (6):3988-3994. Epub 2007/09/06. DOI: 10.4049/jimmunol.179.6.3988 - 33.
Faria MS, Reis FC, Azevedo-Pereira RL, Morrison LS, Mottram JC, Lima AP. Leishmania inhibitor of serine peptidase 2 prevents TLR4 activation by neutrophil elastase promoting parasite survival in murine macrophages. Journal of Immunology. 2011; 186 (1):411-422. Epub 20101122. DOI: 10.4049/jimmunol.1002175 - 34.
Ireland PM, Marshall L, Norville I, Sarkar-Tyson M. The serine protease inhibitor Ecotin is required for full virulence of Burkholderia pseudomallei. Microbial Pathogenesis. 2014; 67-68 :55-58. Epub 2014/01/28. DOI: 10.1016/j.micpath.2014.01.001 - 35.
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, et al. Comparative genomics of trypanosomatid parasitic protozoa. Science. 2005; 309 (5733):404-409. Epub 2005/07/16. DOI: 10.1126/science.1112181 - 36.
Opperdoes FR, Michels PA. Horizontal gene transfer in trypanosomatids. Trends in Parasitology. 2007; 23 (10):470-476. Epub 2007/09/11. DOI: 10.1016/j.pt.2007.08.002 - 37.
Andrade IDS, Vianez-Junior JL, Goulart CL, Homble F, Ruysschaert JM, Almeida von Kruger WM, et al. Characterization of a porin channel in the endosymbiont of the trypanosomatid protozoan Crithidia deanei. Microbiology (Reading). 2011; 157 (Pt 10):2818-2830. Epub 2011/07/16. DOI: 10.1099/mic.0.049247-0 - 38.
Molyneux D. Neglected tropical diseases. Community Eye Health. 2013; 26 (82):21-24. Epub 2013/09/12 - 39.
Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, Ma N, et al. BLAST: A more efficient report with usability improvements. Nucleic Acids Research. 2013; 41 (Web Server issue):W29-W33. Epub 2013/04/24. DOI: 10.1093/nar/gkt282 - 40.
Gouy M, Guindon S, Gascuel O. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution. 2010; 27 (2):221-224. Epub 2009/10/27. DOI: 10.1093/molbev/msp259 - 41.
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest 3: Fast selection of best-fit models of protein evolution. Bioinformatics. 2011; 27 (8):1164-1165. Epub 2011/02/22. DOI: 10.1093/bioinformatics/btr088 - 42.
Letunic I, Bork P. Interactive tree of life v2: Online annotation and display of phylogenetic trees made easy. Nucleic Acids Research. 2011; 39 (Web Server issue):W475-W478. Epub 2011/04/08. DOI: 10.1093/nar/gkr201 - 43.
Fuhlendorf MM. Loci Image Generator and Ecotin Phylogenetics: Customized Software as a Tool for Evolutionary Analysis. Santo André, Brazil: Federal University of ABC; 2018 - 44.
Garcia FB, Cabral AD, Fuhlendorf MM, da Cruz GF, Dos Santos JV, Ferreira GC, et al. Functional and structural characterization of an ecotin-like serine protease inhibitor from Trypanosoma cruzi. International Journal of Biological Macromolecules. 2020; 151 :459-466. Epub 20200218. DOI: 10.1016/j.ijbiomac.2020.02.186 - 45.
Sturm NR, Degrave W, Morel C, Simpson L. Sensitive detection and schizodeme classification of Trypanosoma cruzi cells by amplification of kinetoplast minicircle DNA sequences: Use in diagnosis of Chagas' disease. Molecular and Biochemical Parasitology. 1989; 33 (3):205-214. DOI: 10.1016/0166-6851(89)90082-0 - 46.
Telleria J, Lafay B, Virreira M, Barnabe C, Tibayrenc M, Svoboda M. Trypanosoma cruzi: Sequence analysis of the variable region of kinetoplast minicircles. Experimental Parasitology. 2006; 114 (4):279-288. Epub 20060530. DOI: 10.1016/j.exppara.2006.04.005 - 47.
Belaaouaj A, Kim KS, Shapiro SD. Degradation of outer membrane protein a in Escherichia coli killing by neutrophil elastase. Science. 2000; 289 (5482):1185-1188. Epub 2000/08/19. DOI: 10.1126/science.289.5482.1185 - 48.
Weinrauch Y, Drujan D, Shapiro SD, Weiss J, Zychlinsky A. Neutrophil elastase targets virulence factors of enterobacteria. Nature. 2002; 417 (6884):91-94. Epub 2002/05/23. DOI: 10.1038/417091a - 49.
Myint SL, Zlatkov N, Aung KM, Toh E, Sjostrom A, Nadeem A, et al. Ecotin and LamB in Escherichia coli influence the susceptibility to type VI secretion-mediated interbacterial competition and killing by vibrio cholerae. Biochimica et Biophysica Acta - General Subjects. 1865; 2021 (7):129912. Epub 2021/04/24. DOI: 10.1016/j.bbagen.2021.129912 - 50.
Levy DJ, Goundry A, Laires RSS, Costa TFR, Novo CM, Grab DJ, et al. Role of the inhibitor of serine peptidase 2 (ISP2) of Trypanosoma brucei rhodesiense in parasite virulence and modulation of the inflammatory responses of the host. PLoS Neglected Tropical Diseases. 2021; 15 (6):e0009526. Epub 20210621. DOI: 10.1371/journal.pntd.0009526 - 51.
van Furth R, Cohn ZA. The origin and kinetics of mononuclear phagocytes. The Journal of Experimental Medicine. 1968; 128 (3):415-435. DOI: 10.1084/jem.128.3.415