Abstract
Thyroid cancer is the most common endocrine neoplasm occurring in dogs. We reported familial thyroid follicular cell carcinomas (FCCs) in 54 Dutch German longhaired pointer (GLP) dogs. We investigated the genetics of the FCC in these dogs, including the germline risk mutations and somatic driver mutations. We identified the germline risk factor locating in the TPO gene for these hereditary FCCs through a combination of genome-wide association study (GWAS) and homozygosity mapping analyses using SNP array genotype data and whole-genome sequencing data. We further investigated the somatic mutation landscape of these FCCs using high-depth whole-genome sequencing technology of the tumors. A recurrent missense mutation in the GNAS gene was identified as a very promising driver mutation. We validated this somatic mutation using Sanger sequencing and revealed a prevalence of 62.5% among thyroid tumors identified in the Dutch GLPs. In addition, we can also review the findings in genetics of other canine thyroid tumors in recent years.
Keywords
- thyroid carcinoma
- dog
- animal
- germline risk factor
- somatic mutation
1. Introduction
Dogs have a pair of thyroid glands that are located on each side of windpipe in the neck. Dogs, like humans, develop thyroid cancers in these glands. Thyroid cancer is the most common endocrine neoplasm, accounting for 1%–4% of all canine neoplasms [1]. Thyroid neoplasms can be classified as adenomas or carcinomas. Adenoma is a benign neoplasm, and carcinoma is malignant. Carcinomas are distinguished from adenomas by capsular and/or vascular invasion. Approximately 60%–90% of canine thyroid neoplasms are carcinomas [1]. The thyroid cancer in dogs can be unilateral or bilateral, which account for 67%–75% and 25%–35%, respectively [2]. The typical clinical sign of a thyroid tumor in dogs is the palpable mass in the neck. Other clinical complaints related to thyroid carcinoma include intermittent cough, alopecia, polyuria, polydipsia, weight loss [3].
A canine thyroid tumor can originate from either follicular cells or C-cells (parafollicular cells) in thyroid gland. Thyroid tumors in dogs consist of mainly eight histological subtypes according to a classification of World Health Organization [4], and they are highly similar to corresponding types in humans in histological growth pattern. There are seven subtypes of thyroid tumor originating from follicular cells, including follicular thyroid carcinoma (FTC), papillary thyroid carcinoma (PTC), compact thyroid carcinoma (CTC), follicular-compact thyroid carcinoma (FCTC), poorly differentiated thyroid carcinoma, undifferentiated (anaplastic) thyroid carcinoma, and carcinosarcoma. The thyroid cancer originating from C-cells is called medullary thyroid carcinoma (MTC). Most of canine thyroid tumor originates from follicular cells, accounting for 64%–71%, which is also called non-medullary thyroid carcinoma (NMTC). Thyroglobulin is a protein made by the follicular cells of the thyroid gland, and calcitonin is made by C-cells [5, 6]. Thyroglobulin and calcitonin immunohistochemistry experiments are useful to differentiate thyroid cancer originating from follicular cells or C-cells. Thyroid carcinoma originating from follicular cells exhibits positive immunolabeling for thyroglobulin, and MTC exhibits strong immunoreactivity for calcitonin [1].
Thyroid neoplasms in dogs are usually non-functional. Clinical or biochemical evidence of hyperthyroidism can be observed in less than 25% of affected dogs. Meanwhile, hypothyroidism is also possible because of destruction of normal thyroid tissue, suppression of thyroid-stimulating hormone (TSH) secretion, and subsequent atrophy of normal thyroid tissue [2].
Metastasis is common in canine thyroid carcinoma. Approximately one out of three dog patients have metastasis by the time of diagnosis [1, 7], and 65%–90% of untreated dogs are diagnosed with regional or distant metastasis at necropsy [2]. The lung and regional lymph nodes are the most common organs where canine thyroid carcinoma metastasizes to. Metastasis to other organs is occasionally seen, such as the adrenal glands, liver, heart, brain, kidneys, and bone [1]. In dogs, risk of thyroid tumor increases with age. The average age at diagnosis is between 9 and 10 years. Dogs at age > 10 years have a significantly higher risk of thyroid cancer than younger dogs [1, 8].
Canine thyroid tumors show also some differences if compared with humans. For instance, in humans, females have approximately 2–3 times higher risk for non-medullary thyroid cancer than males [9]. While, in dogs, most studies reported equal incidence of thyroid carcinoma in both sexes [3, 8]. The mechanism underlying the sex bias in incidence of thyroid cancer in humans is still unclear. Another difference is that the most prevalent subtype of thyroid cancer is different between humans and dogs. In humans, PTC is the most frequently diagnosed thyroid cancer, accounting for approximately 85%–90% [10]. However, in dogs, PTC is relatively rare, and FTC is the most common type of thyroid carcinoma [1].
2. A familial canine thyroid carcinoma
Reports of hereditary thyroid carcinoma in dogs are limited. One report presented a hereditary canine MTC with a potential dominant inheritance of autosomal or X-linked inheritance in a family of a mixed dog breed with Alaskan malamute as a major influence [11]. We reported a hereditary thyroid follicular cell carcinoma in a large number of Dutch German longhaired pointer (GLP) dogs [3]. Over the past ~20 years, thyroid tumor was identified in 84 Dutch GLPs. Among those affected GLPs, 54 had histologically diagnosed thyroid follicular cell carcinomas (FCCs), 29 were suspected cases solely based on clinical diagnosis (such as palpable mass in the neck), and 1 had thyroid adenoma. The identified histology subtypes of the FCC include FTC, CTC, FCTC, PTC, and carcinosarcoma. The same as findings in other studies about canine thyroid tumor [1], FTC is the most common among all these subtypes, accounting for 46%. Meanwhile, no sex predisposition was observed in those affected GLPs. Canine FTC incidence increases with age where approximately 57% of cases were diagnosed at ages between 10 and 15 years. However, FCCs in these GLPs were diagnosed earlier where 76% of cases were diagnosed before 10 years of age.
These affected GLPs are very closely related in terms of genetic relationship, where many of them are first-degree relatives, suggesting that these FCCs belong to a familial form of thyroid carcinoma (Figure 1). In humans, a hereditary thyroid cancer is diagnosed when there are two or more first-degree relatives affected [12]. In dogs, according to authors’ knowledge, there is no definition of a hereditary thyroid cancer yet. The definition of hereditary thyroid carcinoma in humans can be borrowed. A striking high incidence of the FCC in offspring of two GLPs was seen (Figure 1). Most of identified affected dogs are related to these two GLPs in pedigree. In the past, in dog breeding, some prominent dogs were used intensively including breeding with relatives, which resulted in the introduction of genetic defects and spread unwanted diseases in the population. The familial FCC here is a good example.
3. Germline risk factor of the familial FCC
Cancer is a disease caused by one or multiple mutation(s) in the genome of cells. A familial cancer has one or multiple germline causal mutations that are inherited from parents of the individual. Identification of germline causal variants has important value for both cancer prevention factors of human thyroid cancer. GWAS is a statistical method to identify genomic regions that are associated with targeted traits/disease taking advantage of linkage disequilibrium between genomic variants. Linkage disequilibrium is the non-random association of alleles at different genomic loci in a given population. It makes it possible to identify the genomic region associated with the investigated trait/disease even when the causal loci are not genotyped. After a GWAS analysis, fine-mapping can be performed to identify the causal variants in the targeted genomic region. Whole-genome sequencing data are usually used in fine-mapping, which can identify all the variants when compared with the reference genome. In order to confirm the causal variants and underlying molecular mechanism, further
Identification of germline risk factor of a hereditary form of thyroid cancer is still challenging. In humans, only approximately 5% of a form of familial non-medullary thyroid cancers have well-documented germline risk factors [13]. We performed a series of analyses based on a combination of SNP array genotype data and whole-genome sequencing data to identify the germline risk mutation that confers a higher risk for thyroid carcinoma in Dutch GLPs [14]. We combined a GWAS analysis and a homozygosity mapping to identify the genomic region that is associated with the FCC. This combined strategy was used because clear population stratification was observed between the genotyped affected and unaffected dogs. In the GWAS analysis, to correct over false-positive discoveries, genomic relationship matrix estimated based on genotype data was incorporated as a random effect. Homozygosity mapping was also used because the FCC in these dogs has very likely an autosomal recessive inheritance pattern according to pedigree. Homozygosity mapping used in that study is based on runs of homozygosity (ROH)-based approach, which is a powerful method to identify genomic region that is associated with a recessive disease. A common genomic region was identified by both the GWAS and homozygosity mapping analyses. Next, we performed fine-mapping using WGS data of 11 affected and 11 unaffected GLPs to identify the germline mutations that are in the targeted region. A series of stringent filtering was performed on the variants identified in the targeted genomic region based on WGS data: 1) must be deleterious predicted by pathogenicity prediction tools; 2) must fit an autosomal recessive inheritance pattern; 3) must be rare in general dogs; 4) must be conserved across species. At the end, we identified two deleterious mutations, chr17:800788G>A (p.686F>V) and chr17:805276C>T (p.845T>M), in the
The genetic cause of general canine thyroid cancer is still poorly studied. There is no study that investigated the genetic causes of canine thyroid cancer at a genome-wide scale, except for our study. Genetic causes of canine thyroid cancer need to be revealed since thyroid tumor is the most frequent endocrine neoplasm in dogs.
4. Somatic mutations in canine thyroid cancer
Most of thyroid carcinomas in dogs are sporadic, the same as it is in humans. Sporadic cancers are caused by somatic mutations that occur in somatic cells, which are different from germline causal mutations in hereditary cancers. These somatic mutations are not inherited from parents of the individual, but are acquired by random DNA replication error during cell divisions that occurred by chance or due to exogenous or endogenous carcinogens that can increase the risk for the cancer. These exogenous carcinogens include smoking and X-ray. Endogenous carcinogen includes reactive oxygen species produced during metabolism [15]. When these mutations occur in proto-oncogene or tumor-suppressor gene, then a cancerous cell may arise.
Identification of somatic mutation at a genome-wide scale becomes possible with the development of next-generation sequencing technologies. The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) projects have profiled tens of thousands of human cancers of different types and origins [16, 17]. Normally, whole-genome or whole-exome sequences of tumor tissue and matched normal tissue (blood or healthy tissue adjacent to tumor tissue) are generated and compared to identify those somatic mutations that are unique to tumor cells. Among somatic mutations, according to their role in tumorigenesis, driver and passenger mutations are defined. Driver mutations are somatic mutations that are important to the tumor initiation and growth, and passenger mutations are those neutral mutations that do not contribute to tumorigenesis. Identification of driver mutation is one of the major tasks in oncogenic research. Identification of driver mutations sheds light on molecular mechanisms underlying tumor initiation and development. Those driver mutations have potential value to be used to develop targeted treatment to kill cancerous cells.
Somatic mutations of human thyroid carcinoma have been extensively investigated at a genome-wide scale. Somatic mutations of canine thyroid carcinoma are still poorly studied. A somatic mutation in
The
The
Besides our genome-wide study, Campos et al. investigated somatic mutation landscape of 43 canine FCCs and 16 canine MTCs by targeted sequencing of some driver genes identified in human thyroid carcinoma [23]. Those genes include
5. Pathways involved in thyroid carcinoma in dogs
In humans, molecular signaling pathways that are involved in thyroid carcinoma are extensively investigated. The most dominant molecular signaling pathways are the mitogen-activated protein kinase (MAPK) and phosphatidylinositol-3 kinase (PI3K)/Akt pathways [24]. Activation of these pathways as a result of activating mutations in proto-oncogenes (such as
6. Inbreeding and disease incidence
Inbreeding is the production of offspring from mating or breeding of individuals or organisms that are closely related [25]. It can be technically defined as mating of a pair of animals with relationship that is closer than the average level within the breed or population studied. In domesticated animals, inbreeding can decrease the performance of animals, such as decrease in milk yield, which is termed as inbreeding depression. The genetic basis of inbreeding depression is that increased homozygosity with inbreeding increases the frequency of unfavorable genotypes within the population [25]. Inbreeding can increase the incidence of inherited diseases in the population, especially those with a recessive inheritance pattern. In our studies, we estimated inbreeding coefficients using either pedigree or genome-wide genotype data. We observed significantly higher inbreeding levels in affected GLPs (average pedigree-based inbreeding: 0.23, average genotype-based inbreeding: 0.51) in comparison to those unaffected GLPs (average pedigree-based inbreeding: 0.14, average genotype-based inbreeding: 0.48). This suggests the importance of inbreeding control in preventing inherited diseases, including cancer, in pedigree dog breeding.
7. The usage of identified germline and somatic mutations
Identification of germline risk mutations can be valuable for cancer prevention. For hereditary cancer with a simple inheritance pattern, the identified germline risk mutation can be used to identify those individuals that have a higher risk for the cancer through a genetic test. Those animals then can be removed from the breeding program to eradicate the inherited cancer from the population. Without a genetic test, it is hard to completely remove a disease with an autosomal recessive inheritance pattern from the population because of difficulty in identifying those heterozygous animals. For a cancer with a complex inheritance pattern, a polygenic risk score can be calculated based on all identified germline risk mutations to predict the risk of the cancer development for an individual. For those people with a high risk score for certain disease, early prevention, such as healthy dietaries and life styles, can be taken to diminish the risk. Frequent examination can also be arranged to detect the disease earlier and cure easier.
We developed a genetic test based on one of the germline risk mutation (chr17:800788G>A) in the
8. Germline and somatic mutation interaction
9. Medullary thyroid cancer in dogs
Regarding MTC, both spontaneous and hereditary forms have been reported in dogs [7, 11, 28, 29]. Up to 20%–30% of human hereditary MTC is caused by activating mutations in the
10. Thyroid cancer in other species
Besides the occurrence in dogs, thyroid tumor has also been reported in many other species, such as guinea pig [31], cat [32], horse [33], cattle [34, 35], barred owl [36], rat [37], and ferret [38, 39]. Thyroid hyperplasia was seen in fish over one hundred years ago, and thyroid neoplasms were also reported in fish [40]. Thyroid carcinoma has been induced in mice using transgenic technology for the study of pathogenesis [41]. Genetic causes of thyroid carcinoma in these species (except for mice) are generally not known. Mapping of the genetic causes of thyroid carcinoma in these species is needed to elucidate the molecular mechanism of tumorigenesis. However, it is challenging due to the difficulty in identifying sufficient amount of cases for causal mutation mapping in those species.
11. Dogs as cancer models
An animal model is an indispensable model to investigate the pathogenesis, molecular mechanisms of tumor initiation and development and to test novel treatments. Scientists have increasing interest in dog disease models in recent years. Dogs may have many advantages to be used as disease models compared with the most popular model species such as mouse and rat [42]. Dogs are the most popular companion animals globally and are the second in medical surveillance and preventative health care after humans [42]. Dogs are more similar to humans such as in genetics, immune systems, body size. Meanwhile, pet dogs share living environment with their owners, thus receiving similar environment factors. There is, for example, a gap between mouse model and chimpanzee models in clinical trials. There is no doubt that mice contribute a lot to novel drug development. However, it is also true that many drugs work during trials on mice but fail in human clinical trials because of difference in physiology between these two species.
Breed dogs have in general low genetic diversity due to two bottleneck events in history: one is domestication from grey wolf around 15,000 years ago, and another one is strong artificial selection in order to fix certain traits of breeds during the breed formation in the past ~200 years [43]. This low genetic diversity results in many genetic diseases/disorders, such as osteosarcoma in Rottweiler, elbow dysplasia in Labrador Retriever, and medial patellar luxation in Chihuahua [44, 45]. According to a study of Farrell et al., there are 396 hereditary disorders identified in 215 officially recognized dog breeds in the United Kingdom [46]. Many of these disorders also occur in humans, which makes those dogs potentially valuable disease models to investigate the pathogenesis of those disorders. Low genetic diversity within each dog breed makes mapping of causal variants of those diseases easier in dogs than that in humans. Much smaller number of SNPs are needed to identify the genomic region that is associated with an inherited disease in dogs in comparison to humans because of the low genetic diversity and large haplotype blocks [42]. This facilitates unraveling the genetic basis of inherited disease.
In rodents, thyroid carcinoma usually has a follicular architecture but does not have the morphological or cytological characteristics used in the diagnosis of papillary carcinomas in humans [37]. Canine thyroid carcinoma is more similar to human thyroid carcinoma in morphology of histology in comparison to thyroid carcinoma in rodents. GLPs with familial FCCs can be a valuable disease model to elucidate the molecular mechanism underlying tumor initiation and development with driver mutations in the
12. Conclusion
We summarized our research regarding a familial thyroid follicular cell carcinoma in Dutch German longhaired pointer dogs. We identified two deleterious mutations in the
Conflict of interest
The authors declare no conflict of interest.
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