General results obtained in this work by the molecular characterization of isolates of
Abstract
Trypanosoma cruzi, the etiological agent of Chagas disease, presents considerable heterogeneity among populations of isolates within the sylvatic and domestic cycle. This study aims to evaluate the genetic diversity of 14 isolates collected from specimens of Triatoma vitticeps from Triunfo, Conceição de Macabu, and Santa Maria Madalena cities (Rio de Janeiro—Brazil). By using PCR based on the mini-exon gene, all isolates showed a profile characteristic of bands zymodeme III and with a lower intensity characteristic of TcII. To verify possible hybrids among the strains analyzed, the polymorphisms analysis of the MSH2 gene was performed. HhaI restriction enzyme digestion products resulted in characteristic TcII fragments only, demonstrating the absence of hybrids strains. In our attempt to characterize isolation in accordance with the reclassification of T. cruzi into six new groups called DTUs (“discrete typing unit”), we genotyped the mitochondrial cytochrome oxidase subunit two gene, ribosomal RNA gen (24Sα rDNA), and the spliced leader intergenic region (SL-IR). This procedure showed that TcII, TcIII, and TcIV are circulating in this area. This highlights the diversity of parasites infecting specimens of T. vitticeps, emphasizing the habit of wild type and complexity of the region epidemiological study that presents potential mixed populations.
Keywords
- molecular biology
- natural infection
- triatomine
- Trypanosoma cruzi
- heterogeneity
1. Introduction
The heterogeneity of strains of this parasite has been demonstrated using different markers: morphological, biological susceptibility to chemotherapeutic agents, immunological, biochemical and molecular [4, 5, 6, 7, 8, 9, 10, 11, 12, 13].
Considerable advances have been made to understand the genetic makeup of
Ribosomal gene sequences have been widely used to infer phylogenetic relationships among the trypanosomatids and representatives of other families of the order Kinetoplastida and phylum Euglenozoa. In trypanosomes, the sequence of the 24S subunit is interrupted by an internal spacer generating two molecules, 24Sα and 24Sβ.
The conserved non-transcribed regions of the pre-rRNA correspond to the internal transcribed spacer (ITS) and external (ETS). The presence of several regions, transcribed or not, that display varying degrees of variability, entail a high degree of polymorphism of the ribosomal cistrons and for this reason, have proved to be excellent as a tool for identification and phylogenetic studies of trypanosomes [15]. The ITS spacers are highly variable compared with ITS which, in turn, are much more variable regions of the Small Sub Unit (SSU) and Large Sub Unit (LSU). Analysis of polymorphism of ribosomal sequences has been used in the identification and genotyping of strains.
Souto and cols. [16] standardized a marker based on the region of the LSU 24Sα, which distinguishes the
Due to its organization comprising regions with differing degrees of conservation of the mini-exon genes have been used for diagnosis purposes and taxonomic. Each repeating unit of the Spliced Leader (SL) gene can be basically divided into three parts: a highly conserved exon of 39 nucleotides, an intron moderately conserved nucleotides 50–100 and an intergenic spacer region, which varies in size and sequence among trypanosomes species and strains. There are about 200 repeated copies of the SL gene “in tandem” in the trypanosomes genome which are therefore a good target for diagnosis [21, 22, 23]. The use of PCR methods for genotyping based on the mini-exon and ribosomal genes segregates this parasite into three major lineages:
Augusto-Pinto and cols [25] demonstrated that
These results suggested that the lower efficiency of MMR of haplogroups B and C could be associated with an increased generation of genetic variability in these strains. Thus an analysis of genetic variability by targeting the gene encoding the
Zingales and cols [13] standardized nomenclature into six groups (
This study aimed to evaluate the genetic diversity of 14 isolates of specimens of
2. Materials and methods, results and discussion
2.1 Parasites
The isolates were obtained from specimens of
2.2 Growth of parasite
The samples were maintained in tubes containing NNN medium plus LIT (Liver Infusion Tryptose), as the liquid phase, supplemented 30% fetal calf serum. The tubes were incubated in an oven of the BOD (FANEM) to 27.3°C, subcultured regularly at intervals of 14 days for maintenance of the samples.
2.3 DNA extraction
Cultures of
3. Polymerase chain reaction (PCR)
3.1 Mini-exon gene
The variability of the intergenic region of the gene of the mini-exon of the samples was studied using the technique of multiplex PCR, using primers TcI, TcII, Z3, Tr and ME [24]. These primers generate an amplification product of 200 bp (TcI), 250 bp (TcII), 150 bp (Z3) and 100 bp (
3.2 MSH2 gene
The study to check possible characters hybrids between the strains analyzed was made based on an analysis of the MSH2 gene polymorphisms with the digestion of the 875bp amplification product of a region of this gene with the restriction enzyme
3.3 Mitochondrial cytochrome oxidase subunit 2 (COII)
Polymorphism in mitochondrial cytochrome oxidase subunit 2 (COII) gene was analyzed using the Tcmit-10 and Tcmit-21 primers that amplified a fragment of approximately 375 bp [29]. The reaction was conducted in a final volume for each sample of 50 μl containing ~100 ng of DNA template, 1U Taq DNA polymerase (Thermo Fisher Scientific), 0.2mM of dNTPs, 1.5mM MgCl2, buffer 1X (10mM Tris-HCl pH 8.8, 50mM KCl, 0.8% Nonidet P40), 10 pmol of each primer (tcmit10 and tcmit21). The reaction was performed under the following temperature conditions: 95°C/5 min and 40 cycles of 95°C/45 sec, 48°C/45 sec and 72°C/1 min and a final extension of 72°C/10 min. The obtained fragments were digested with
3.4 Ribosomal RNA gene (24Sα)
The study segment of the ribosomal RNA gene (DNAr24Sα)
3.5 Spliced leader intergenic region (SL-IRac) gene
The amplification of the spliced intergenic region (SL-IRac) gene was realized with TcIII and UTCC primers in order to distinguish TcIII (fragment of 200 bp) and other DTU (fragment of 150 to 157 bp). The reaction was conducted in a final volume for each sample of 50 μl containing ~100 ng of DNA template, 1U Taq DNA polymerase (Thermo Fisher Scientific), 0,2mM of dNTPs, 1.5mM MgCl2, buffer 1X (10mM Tris-HCl pH 8.8, 50mM KCl, 0.8% Nonidet P40), 10 pmol of each primer (TcIII and UTCC). The reaction was performed under the following temperature conditions: 95°C/5 min, 3 cycles of 94°C/30 sec, touch down 70–64°C/30 sec, 72°C/1 min and 33 cycles of 94°C/30 sec, 62°C/30 sec and 72°C/1 min and final extension of 72°C/10 min. The final products were visualized by electrophoresis in 6.5% acrylamide gel. Dm28c and 3663 strains were used as control.
4. Results
4.1 Variability of the intergenic region of the mini-exon gene
All 14 isolates of
4.2 Variability of the segment of ribosomal RNA gene (24Sα)
PCR amplification of ribosomal RNA gene (24Sα) using primers D71 and D72 resulted in fragments 125pb characteristic of lineage TcII (not shown).
4.3 MSH2 gene
The products of digestion with
4.4 DTU genotyping
DTU was determined according to D´Ávila
According to the results, it was possible to determine DTU. Most of them showed the presence of two mixed
Cepa | Mini-Exon | Tcmit | 24S-rDNA | SL-IR | DTU |
---|---|---|---|---|---|
SMM1 | Z3 TcII | 212a | 125a | 150a | TcIIa |
SMM9 | Z3 TcII | 212a, 294b | 125a | 200b | TcIIa, TcIVb |
SMM11 | Z3 TcII | 212a, 294b | 125a | 150a, 200b | TcIIa, TcIVb |
SMM30 | Z3 TcII | 212a, 294b | 125a | 150a, 200b | TcIIa, TcIVb |
SMM34 | Z3 | 294 | 125 | 200 | TcIV |
SMM36 | Z3 | 212a, 294 | 117b | 150a, 200b | TcIIa, TcIVb |
SMM39 | Z3 | 212 | 125 | 150, (200) | TcII |
SMM51 | Z3 | 294 | 125 | 200 | TcIV |
SMM57 | Z3 TcII | 212a, 294b | 125a | 150a, 200b | TcIIa, TcIVb |
SMM82 | Z3 TcII | 294 | 125 | 200 | TcIV |
SMM88 | Z3 TcII | 212 | 125 | 150, (200) | TcII |
SMM89 | Z3 TcII | 212 | 125 | 150, (200) | TcII |
SMM98 | Z3 TcII | 294 | 125 | 200 | TcIV |
SMM106 | Z3 TcII | 212 | 125 | (200) | TcII |
5. Discussion
Many studies have been performed for the characterization of isolates of
In previous studies using isoenzyme analysis, samples of zymodemes were grouped into three and were related to different isozyme groups found with the epidemiological profile of the isolates. Thus, zymodemes I (Z1) and III (Z3) are related to the sylvatic cycle of the parasite and zymodeme II (Z2) to the domestic cycle [7, 40]. Through molecular biology techniques [10, 12, 16, 20, 41, 42, 43, 44, 45, 46] was able to evidence a clear dimorphism between the isolates of
In 2009 the scientific community was divided into six groups (Tc I-VI) and each group was termed DTU (“discrete typing unit”), which can be identified by the markers molecular or common immunological [27]. In the 70s and 80s, a large number of “group” was identified, and 90 years in 2000, only two major groups, and currently six groups.
In this study, samples of
According to a protocol for determining DTU proposed by D´Ávila
Our results corroborate the hypothesis that isolated from
Evidence indicates that different populations of
Experimental studies have shown that mixed infection with
Our isolates showed indeed a correlation TcIV (formerly Z3) with TcII, indicating that these locality samples associating both the sylvatic cycle, as the domestic cycle, respectively, confirming the complexity of the sylvatic cycle of the disease. These results suggest that in this area might occur studied cycle
As TcV and TcVI, TcII has rarely been recorded in wild cycles and their natural niches are not well defined. Recent studies have demonstrated that TcII strain was isolated from opossums and primates in the wild forest, which led to the suggestion that primates could be the primary mammalian hosts of original TcII [59].
TcIV is relatively the more poorly understood group. It is the type responsible for the cause of Chagas disease in Venezuela [48] and was also responsible for the first record of an outbreak of acute cases simultaneously orally transmitted Chagas disease in the suburb of Canudos, State of Belém do Pará/Brazil [40].
Understanding the distribution and phylogeography of TcIV is complicated by the fact that several genotyping methods can not distinguish this strain from others, particularly TcIII.
It is important to emphasize that, TcIV and TcI is known to be endemic, in, North America, and were associated with raccoons in this region [60, 61]. Moreover, there is evidence that TcIV in North America is quite different from TcIV in South America [49, 62], and the presence of identical sequences of mitochondrial DNA in North America strains TcIV and TcI lineages suggests that genetic exchange has contributed to the diversity of strains seen in North America ([51]; Yeo
The existence of mixed populations isolated from the
Genotyping demonstrates that the strains have a history that makes biological sense with widely current ecological structure, although the details are not yet well elucidated, but still require further research. The study of the genetic diversity of
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