Net Mulliken atomic charges calculated using DF B3LYP/6-31G(d,p) approach.
Abstract
The stability of metal complexes in both thermodynamic and kinetic aspects always was a matter of interest in the field of coordination chemistry. Practical implementation of a fluorophores in a field of molecular biology also is essentially constrained by their solvolytic and protolytic stability. The aforementioned emphasizes interest in a search for factors of quantitative stability-based discrimination on a row of BODIPY derivatives. This chapter shows that thermodynamic stability of a dipyrrinates varies to a large extent from a mostly undestructable solvolytically BODIPYs to a very volatile in the same aspect rare-earth element complexes.
Keywords
- BODIPY
- decomposition mechanisms
- stability
- acidic conditions
- kinetic data
- dissociation
1. Introduction
The stability of metal complexes in both thermodynamic and kinetic aspects always was a matter of interest in the field of coordination chemistry. Whereas the thermodynamical approach to investigation of coordination compound stability was well established back before the first half of the twentieth century [1, 2], there were very few, if any, attempts to systematize patterns of formation and destruction of complexes in a kinetical aspect.
A monograph published in 2007 [3] highlights the factors affecting kinetics of dissociation and mechanisms of this process for a vast range of coordination compounds. Both well-known ‘Verner’ complexes and the most contemporary porphyrinato and phthalocyaninato complexes are discussed therein. Remarkable contribution made to the topic by the authors was systematization of the factors, influencing both kinetic and thermodynamic stability of the complex compounds. Due to the universal nature of the proposed models, they could be easily adapted to describe dissociation processes taking place for other complexes. High impact of both external (selected solvent and reagent) and internal (molecular structure) parameters on the dissociation process, showed in the monograph, emphasizes importance of the study for pure and applied chemistry of the dipyrrins.
The process of optimisation of physicochemical properties of the compounds essentially implies a search for the compromise between the photophysical efficiency and stability. The latter, in turn, includes resilience to solvolytic, protolytic and solvoprotolytic dissociation and photochemical, thermooxidative and some other destruction routes [4, 5]. Our research shows that thermodynamic stability of a dipyrrinate varies to a large extent from a mostly undestructable solvolytically BODIPYs to a very volatile in the same aspect rare-earth element complexes. Work of our colleagues from Tomsk [6, 7, 8] shows that immobilization of a BODIPY in a sol–gel silicon oxide involves specific interactions of a chromophore with a silanol moiety of a matrix. This drastically influences fluorescence quantum yield of the chromophore, decreasing it up to a factor of 100 and causing significant changes in the shape of both fluorescence and absorbance spectrum. Interestingly, a similar behaviour is observed for BODIPY upon interaction with protic solvents and Arrhenius acids. The common thing in both situations is that sol–gel technology involves usage of aggressive medium on the early stages of either acid-catalysed process or a base-catalysed one [9]. Research [10] shows decrease of pH to affect BODIPY photophysical parameters in an irreversible manner. Namely,
Our collaboration with the Institute of Solution Chemistry of the Russian Academy of Sciences pushed the limits in the field thanks to the huge amount of data and experience in the studies of such processes for porphyrins and phthalocyanines. Until the current review on dipyrrinate stability, our colleagues from ISC RAS have published [11, 12] kinetics of
Analysis of dissociation kinetics of other stated dipyrrinates in acetic acid benzene solutions yields a row of descending stability to protolytic dissociation:
Whereas this row coincides roughly with a respective row for thermodynamic stability, it has absolutely nothing to do with the corresponding dependencies for complexes of a structurally flexible chelate and amines like ethylenediamine. Stability of the
To summarize, available data demonstrates lack of macrocyclic effect in dipyrrinates to negatively impact complexes stability. Influence of this structural disadvantage is exemplified for the
2. Protolytic dissociation of alkylated Zn (II) dipyrrinates
Here we review research on kinetics of
Electronic absorption and fluorescence spectroscopy was used for examination of dissociation kinetics at 298, 308, 318 and 328 K temperature points. Observed rate constant (
where
Electronic absorption spectra of the compounds exhibit bright characteristic absorption band at 500 nm corresponding to
It was shown, that addition of acetic acid in benzene provokes decrease of the long-wavelength absorption maximum (
It is reasonable to state, therefore, that
Even the smallest acid amounts provoked immediate
Measured to be
Linearization of kinetic data for the
According to the literature data [17, 18, 19], Gammet’s acidity function is in direct ratio with acid concentration in the range used (0.21–0.78 M); thus activity could be safely substituted with the concentration.
Protolytic dissociation, therefore, proceeds the same way as protonated ligand formation and could be described by the third-order kinetic equation:
Data obtained is in good agreement with the literature and justifies participation of two acid molecules in the limiting stage of the reaction. Analogous mechanism takes place in the protolytic dissociation of metalloporphyrins [20, 21], possessing similar structure of the coordination centre. Kinetic constant values
Δ | Δ | |||
---|---|---|---|---|
[ | ||||
298 308 318 | 0.0001 0.0002 0.0005 | 61.2 ± 2.3 | −119.6 ± 10.3 | 58.7 ± 2.2 |
[ | ||||
298 308 318 | 0.0003 0.0005 0.0007 | 52.3 ± 3.2 | −141.1 ± 12.4 | 49.8 ± 3.2 |
Zn(II) bis(4,4′-dibutyl-3,3′,5,5′-tetramethyl-2,2′-dipyrrinate) | ||||
298 303 313 318 | 0.0006 0.00099 0.00171 0.00232 | 51.4 | −142.3 | 48.9 |
Formation of a protonated ligand form
With the quasi-steady-state assumption, the equation for
which coincides with the experimentally derived equation. Further simplification is possible with the assumption of kinetic insignificance of
The rate-determining step is, therefore, the first stage. Activation parameters obtained serve as the further approval for the conclusions stated above. Namely, increase in ordering due to formation of
Data presented allows us to identify the effects of dipyrrolic ligand alkyl substitution to the kinetic stability of the corresponding complexes for the first time. Whereas the
In our other paper [14], the search for analogies in photochemical and protolytic stability was performed.
Photochemical destruction processes of
From the data obtained, we state the main role of oxidative hydroxylation of alkyl moieties and
Observable constants were measured to be
3. Protolytic dissociation of Pd(II) dipyrrinates and bis-dipyrrinates
Dipyrromethene ligands are known to possess flat molecular shape and mobile
Here we review our research on
Preliminary examination revealed absolute insusceptibility of the studied complexes to protolysis in
Linear dependencies obtained for data plotted in semi-logarithmic coordinates indicate first-order reaction relative to complex concentration. Observable rate constants, at the same time, suggest second-order reaction relative to
Protolytic dissociation therefore could be described by the third-order equation, in a similar way as the ligand protonation process:
Kinetical and activation parameters for the
Δ | Δ | |||
---|---|---|---|---|
[ | ||||
298 308 318 | 4700 ± 200 7320 ± 360 18,788 ± 393 | 52.4 ± 2.3 | −6.0 ± 0.3 | 44.8 ± 2.2 |
[ | ||||
298 308 318 | 1120 ± 50 5210 ± 190 5860 ± 280 | 65.8 ± 3.2 | 25.7 ± 0.5 | 65.3 ± 3.2 |
Formation of a protonated ligand form (
Quasi-steady-state assumption for this process allows us to describe this process with the equation:
As it was done for
Thus, the obtained activation parameters describe the transition state formation (rate-determining step). Here we also assume the possibility of interaction between the acid anion and Pd(II) atom.
Comparison of the activation parameters for
It is worth mentioning here that in other researches,
Both polychelating and macrocyclic effect should be therefore mentioned as the most important factors of coordination compound stabilization. The hallmark of these effects is a drastic decrease in dissociation rate constants upon switching from simply chelating ligands, to polychelating ones and, finally, to macrocyclic ligands.
4. Protolytic dissociation of Cu(II) and Ni(II) bis-dipyrrinates
Investigation of
Obtained thermodynamic constant value of
Unlike
Straight lines obtained in the semi-logarithmic coordinates suggest first-order reaction relative to complex concentration, described with the equation:
Each of the two equilibria could be described, therefore, as the consequent protonation of the dipyrromethene ligand. For an equilibrium involving formation of heteroligand complex
Kinetic scheme involves the following stages:
For the heteroligand complex dissociation
And the kinetic scheme could be written as follows:
Observable second-order reaction relative to acid concentration suggests formation of the heteroligand complex to be the limiting stage of the process. Quasi-steady-state assumption along with concluded insignificance of heteroligand complex dissociation speed allows us to derive the equation:
which is in good agreement with the experimentally derived equation:
From the temperature variation experiments, activation parameters of the reaction were obtained.
Δ | Δ | |||
---|---|---|---|---|
dpm− = 3,3′,4,5,5′-pentamethyl-4′-ethyl-2,2′-dipyrromethene anion | ||||
298 318 328 | 0.29 ± 0.02 0.42 ± 0.03 0.83 ± 0.05 | 43.9 ± 2.7 | −115.2 ± 12.7 | 41.4 ± 2.5 |
dpm− = 3,3′,5,5′-tetramethyl-4,4′-dibutyl-2,2′-dipyrromethene anion | ||||
298 303 313 318 | 2279 ± 3 2660 ± 3 4541 ± 5 5272 ± 11 | 35 ± 3 | −72.14 ± 13 | 32.5 ± 3.8 |
Activation energy for the studied compound was found to be higher than that for the Ni(II) butyl-substituted dipyrrinate [15]. Strong inductive effect of alkyl moieties leads to higher electron-donating ability of the pyrrolic nitrogen and, therefore, increases kinetic stability of the compounds.
5. Patterns of BODIPY kinetic acid: Base dissociation
As it was mentioned before, understanding of a BODIPY behaviour in aggressive media is crucial within the scope of their practical application. The only data available to date was their higher solvolysis stability as compared to the d-metal dipyrrinates. Results reviewed below [25, 26, 27, 28] thus are the first attempts of quantitative evaluation of a protolytic and solvoprotolytic resilience of a boron-dipyrromethenes.
6. Kinetical studies of BODIPY protolytic dissociation
Kinetic stability was evaluated for 4,4′-diethyl-3,3′,5,5′-tetramethyl-dipyrromethene (
All of the compounds exhibited intense electronic absorption band at 528, 523 and 491 nm, respectively, and a charge-transfer band situated in a near UV region. Sulphonated complex exhibited hypsochromically shifted maximum due to the differences in electronic structure (Figure 7).
Electronic absorption and fluorescence spectroscopy data lacked any dissociation hallmarks for
To summarize, treatment of BODIPY with proton-donating agents leads to a fluorophore destruction down to a protonated ligand form. Protolytic or a solvoprotolytic destruction thus provokes significant changes in photophysical and spectral properties of the studied compounds due to destruction. Looking back to the technological aspects, irreversible changes in the dipyrrinates spectral characteristics after the sol-gel process should not have been erroneously described by the weak specific interactions [6, 7]. Instead, a way more pronounced dye destruction should have been taken into account.
Typical fluorescence and absorption changes observed during the dissociation process are presented below (Figures 8 and 9).
Formal kinetic analysis of a
Activities were calculated according to the literature data for an
Kinetical equations of the second order are obviously applicable here:
Equations proposed along with the experimental data suggest one to assume the process to be the two-stage protonation of the complex as stated below:
Quasi-steady-state assumption (suggesting that step 2 is rate-determining) allows stating the kinetical equation for this process in a convenient form:
which totally coincides with the experimentally derived equation stated before.
Kinetic and activation parameters for the studied reaction are listed in the table below.
BODIPY dissociation thus proceeds via the
This fact by itself, however, does not influence the kinetic model of the process proposed above.
Compound | Δ | Δ | |||
---|---|---|---|---|---|
EtOH–CF3COOH | |||||
[BF2dpm1] | 298 | 0.20 ± 0.01 | — | — | — |
EtOH–H2SO4 | |||||
[BF2dpm1] | 298 308 318 | 0.10 ± 0.01 0.40 ± 0.02 1.4 ± 0.1 | 104 ± 6 | 102 ± 6 | 20 ± 1 |
С6Н6–CCl3COOH | |||||
[BF2dpm2] | 298 | 0.50 ± 0.03 | — | — | — |
EtOH–H2SO4 | |||||
[BF2dpm2] | 298 308 318 | 0.050 ± 0.003 0.090 ± 0.005 0.70 ± 0.004 | 103 ± 6 | 101 ± 5 | 12.0 ± 0.6 |
H2O–HCl | |||||
[BF2dpm3] | 298 | 0.070 ± 0.004 | — | — | — |
Ultimately, obtained results allow us to state a set of patterns for kinetic BODIPY protolytic dissociation stability. Both
BODIPY, therefore, is unique in terms of kinetic stability towards protolytical and solvoprotolytical dissociation. Namely, different d-metal dipyrrinates in the
7. Quantum chemical modeling of protolytic dissociation mechanism
BODIPY, unlike d-metal dipyrrinates, has an ambiguity lying beneath the protolytic destruction mechanism due to specific coordination centre structure. In addition to the possibility of direct nucleophilic attack towards pyrrolic nitrogen, the phosphorus atom is also capable to interact with electrophilic agent with consequent
Quantum chemical calculations were performed using GAUSSIAN03W and HyperChem 8.0.3 software. Semi-empirical PM6 method, which was verified basing on the experimental structural data for the bulky organic molecules, was used for rough geometry estimation and potential energy surface evaluation. Result refinement was performed using density functional theory approximation, with a B3LYP hybrid functional and a 6-31G(d,p) basis set.
The first studied mechanism involves direct nitrogen protonation with and consequent
For potential energy surface cross sections, interatomic distance was chosen as an independent coordinate. Namely, those were
Net Mulliken charges on the atoms show the favor for the second mechanism demonstrating fluorine to be more electron-rich than nitrogen. Optimized geometries for BODIPY and its single- and double-protonated forms are presented in Figure 11. Protonation of the atoms causes charge inversion on the fluorine atom and decrease of the partial positive charge on the pyrrolic nitrogen (Table 1).
Atom. | Structure | ||
---|---|---|---|
A | B | C | |
N1 N2 F1 F2 B H1 H2 | 0.307 0.307 −0.21 −0.209 0.06 | 0.219 0.218 0.052 −0.158 0.13 0.307 | 0.077 0.077 0.072 0.071 0.021 0.323 0.323 |
Activation energy for the nitrogen protonation corresponds to 18 kJ/mol.
For an
From the aforementioned we state that fluorine protonation with consequent
8. Hydrolysis and destruction of BODIPY in alkaline solutions
Resilience of BODIPY to the aggressive components of the reaction mixtures involved in the hybrid material formation is of high importance. Up to our first paper in the field [26], stability of boron-dipyrromethenes in the alkaline medium was never studied. Here we review kinetic stability of disodium 4,4′-disulpho-3,3′,5,5′-tetramethyl-dipyrromethene (
First, changes were observed at pH values
Linearization using first-order reaction coordinates yields unity root mean square and approves the first-order reaction relative to the complex concentration. At the same time, dependence of
Acid (
According to the scheme, the canonical kinetic equation could be written as
Quasi-steady-state assumption for this reaction scheme allows stating the kinetical equation for this process in a form:
which coincides with the experimentally obtained dependencies. Thus, total reaction rate equation could be written as
Ultimately, we can state high BODIPY stability towards alkaline medium, granting possibility of their usage in high pH range during hybrid materials synthesis. Proposed mechanism and data obtained for the hydrolytic BODIPY destruction in alkaline medium extends the frontiers of their practical applications, suggesting proper usage of acidic additives preventing boron-dipyrrin destruction.
9. Conclusions
Results reviewed in this chapter broaden the data on kinetic stability of dipyrrinates in acidic media. Introduction of the alkyl moiety to the ligand structure leads to an increase in the electron density near pyrrolic nitrogen atoms. Demonstrated results state decrease in stability of intermediate complex upon alkyl chain length increase due to attenuation of +I effect impact. Kinetic stability of dipyrrinates is mainly affected by potency of interaction between electron-donating nitrogen atoms and acid molecules. This possibility, in turn, is highly susceptible to dipyrrin substituents amount, position and electron-donating behaviour. Central atom nature not just simply determines stability of the complex towards protolytic dissociation but fundamentally changes route of the process. Relative stability was stated for
Investigation of the BODIPY destruction in aqueous alkaline medium suggests the first stage of the process to be the alkaline hydrolysis. Unstable intermediate anionic form of the ligand consequently decays yielding uncoloured monopyrrolic products. Analysis of the spectrophotometric data for the process is in good agreement with the reaction scheme proposed.
There is an ongoing research [32, 33, 34, 35, 36] on bis-dipyrrins protolytic dissociation stability. Generally, they are more labile, and benzene solutions of acetic acid are used for the investigation. Doubling the number of the electron-donating groups per molecule complicates the examination; however, with some assumptions made (such as synchronous protolysis) kinetical equations look quite similar with the ones derived in this chapter. It could be stated that lability of helicates (bis-dipyrrins binuclear complexes) in protolysis reactions also do increase if there are no any substituents in terminal pyrrole rings.
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