Open access peer-reviewed chapter

Peptides and Microorganisms Isolated from Soybean Sources with Antimicrobial Activity

By Rosalva Mora-Escobedo, María Del Carmen Robles-Ramírez, Alma Delia Román-Gutiérrez, Javier Castro-Rosas, Ciro Baruchs Muñoz-Llandes and Fabiola Araceli Guzmán-Ortiz

Submitted: April 19th 2018Reviewed: August 31st 2018Published: November 5th 2018

DOI: 10.5772/intechopen.81243

Downloaded: 990


Soybean has a high biological value because it is a potential nutraceutical that benefits human health. Isolated peptides of soybean have been associated with activities such as anticancer, antioxidants, antiobesity, antithrombotics, hypocholesterolemic, antidiabetic, immunomodulatory and antimicrobial, and this last activity is also obtained from microorganisms isolated from soybean subjected to processes such as fermentation, which can act directly against pathogens that are resistant to antibiotics or participate in the synthesis of new peptides with antimicrobial activity, so they could be used as preservatives in food as an alternative in the prevention of diseases. Strains of Bacillus subtilis isolated from soybean are mainly those that have the ability to inhibit the growth and proliferation of pathogens; some fungi such as Rhizopus microspores and Aspergillus oryzae have also had an inhibitory effect. This chapter describes the potential of microorganisms and peptides obtained from different sources of soybean against pathogenic microorganisms responsible for foodborne diseases.


  • soybean
  • antimicrobial
  • peptides
  • microorganisms
  • fermentation

1. Introduction

Soy is a vegetable source of high protein content that simultaneously has several beneficial effects in human health. Its composition includes nutritional compounds of high biological value as lipids, vitamins, minerals, sugars, isoflavones, flavonoids, saponins, and peptides. Its nutritional content has proven its antihypertensive, anticholesterolemic, antioxidant, and anticancer activity [1]. Soy fermentation has mainly been conducted to preserve foods. However, it has been proven that this process is generated by certain microorganisms, expresses diverse nutritional compounds of certain biological value, and simultaneously lowers the concentration of antinutritional components as proteases, phytic acid, urease, and oxalic acids [2]. During this process, starter microorganisms turn complex organic compounds into simple compounds, improving their functionality and availability in the food matrix [3]. Different foods are derived from soy fermentation, in which lactic acid bacteria are used as starter microorganisms, mostly bacteria belonging to the genus Bacillus. These bacteria are responsible for the expression of certain antimicrobial components and provide the fermented products with certain organoleptic characteristics. Peptides, a product of protein hydrolysis, are one of the components expressed by starter microorganisms. They have been proven to exert a biological activity, largely due to the antagonistic and inhibitive effect of pathogenic microorganisms that cause gastrointestinal diseases and are transmitted by food. It has been demonstrated that short-chain peptides have a more efficient inhibitive action than long-chain ones [4].

On the other hand, it has been reported that some antimicrobial lipopeptides can interact with the cell’s membrane, forming pores and leading to cell lysis [5].

This chapter consolidates relevant information on microorganisms and peptides isolated from soy-based foods that are known to have a microbial and/or antagonistic action in the presence of pathogenic bacteria. Reports are listed stating that, after fermentation, microorganism can express antimicrobial compounds that could be analyzed to be substituted by antibiotics.


2. Fermentation

Fermentation is a feasible way to produce peptides when compared against the use of enzymes in protein hydrolysis. Proteolytic enzymes produced by microorganisms involved in fermentation release peptides and free amino acids [6, 7]. For instance, the β-galactosidases in lactic acid bacteria in fermentation can hydrolyze oligosaccharides present in soy, reducing the unpleasant taste and flatulence [8, 9, 10]. Oligopeptides, dipeptides, and tripeptides are created as a result of protein hydrolysis by this type of proteolytic enzymes in soy milk fermentation [11]. The creation of peptides also depends on the soybean variety, the type of inoculation microorganism, and even the strain. Sanjukta et al. [7] found that the efficiency of hydrolyzed protein and free amino acids in fermented soybean with Bacillus subtilisMTCC5480 was higher than with Bacillus subtilisMTCC1747. The activity and generation of microorganisms during fermentation can vary depending on the substrate to produce a determined food. Among the possible sources of fermented-soybean products created from Bacilliare natto, kinema, and chungkookjang. Some other products as sufu, tempeh, douchi, miso, and combinations as doenjang are obtained from fungi. Other products derived from soybean as doubanjiang, meju, sokseongjang, cheonggukjang, kanjang, thua nao, hawaijar, and tungrymbai also create microorganisms with certain biological functions [6, 12, 13].


3. Fermented soybean products

3.1 Buckwheat sokseongjang

Buckwheat sokseongjang, a traditional Korean food, is an aged paste made from fermented soybeans. This fermentation takes place with Bacillus subtilisHJ18-4 as inoculum at 35°C for 36 h [14]. During the fermentation of buckwheat sokseongjang, there is a decrease in sugar content while the opposite occurs for protease and amylase activities [15]. Due to the type of microorganism, the soybean food shows a high antimicrobial spectrum. Lactobacillus plantarumJSA22 has also been isolated from buckwheat sokseongjang with probiotic properties that are able to inhibit infection by S. typhimuriumin intestinal epithelial cells [16].

3.2 Cheonggukjang

This food is also produced from fermented soybeans and, as buckwheat sokseongjang, it is traditional in Korea [17]. Fermentation of cheonggukjang is completed at 40–43°C for 48–96 h [18], using natural microflora as Bacillus subtilis[19, 20]. During this process, the hydrolysis of compounds increases, leading to the conversion of glycosylated flavonoids into aglyconated forms. Additionally, several proteins are degraded into small peptides and amino acids [21, 22]. Cheonggukjang contains many enzymes, microorganisms, and bioactive compounds considered a source of proteins, hydrolyzed peptides, and lipids [19, 20, 23].

3.3 Miso

Miso is a soybean paste obtained by fermentation with lactic acid, yeast, and tane-koji (starter). It maintains some of the texture of the beans; however, the final product is a paste. Aspergillus oryzaestrains are inoculated, allowing the fungus to grow and cover the beans; the process can take months and the same miso can be used as inoculum for new fermentations [24]. The presence of microorganisms as Lactococcussp. GM005, which are capable of producing peptides with antimicrobial activity has been reported in miso fermentation [25].

3.4 Solid fermented soy foods

3.4.1 Douchi

Within the solid fermentation of soy products is douchi, a product of black soybeans that is traditional in China. Several types of douchi can be identified according to the type of microorganisms used in the fermentation (filamentous fungi or bacteria). The soybeans are washed and soaked for 3–4 h. Then, they are steamed for 50 min approximately and cooled at 30°C. The beans are inoculated with Aspergillus aegyptiacus[26], although Mucor, Rhizopus, and bacteria can also be used [27]. After inoculation, the beans are maintained at 30°C for 3–4 days to make koji. Afterwards, they are washed with water and mixed with 16% salt, water, ginger, and a mix of powdered spices. During maturation, the fungal enzymatic activity promotes an increase in amino nitrogen levels and organic acid as well as a reduction in the concentration of isoflavones [24, 26]. Some studies have reported that douchi inhibits the angiotensin-converting enzyme and α-glucosidase and has an antioxidant activity [28, 29].

3.4.2 Natto and kinema

Natto and kinema are soy products with similar elaboration processes. To make natto, soybeans are soaked in water at 21–23°C for 20 h and are boiled at 121°C for 40 min. They are then cooled at 50°C for inoculation with a pure culture of Bacillus subtilisnatto spores that germinate at 50°C [30]. Similarly, to produce kinema, soybeans are soaked overnight at 25°C, cooked, and ground [31]. The fermentation of the product occurs naturally: during the process, bacterial spores able to survive cooking are generated; therefore, there is no need for starter microorganisms. Due to the type of microbiota generated during the fermentation of kinema (species of Bacillus, Bacillus subtilis, Bacillus licheniformis, Bacillus cereus, Bacillus circulans, Bacillus thuringiensis, and Bacillus sphaericus[32] some antimicrobial activity is likely to exist, mainly because of the presence of Bacillus subtilis, which has been reported to have an antimicrobial effect [33].

3.4.3 Tempeh

Tempeh is another solid fermented soy product. Its preparation starts with hull removal; then, the beans are soaked in water for 17 h, approximately. They are cooked in water for 30–40 min; the water is drained and the beans are cooled at room temperature for inoculation with Rhizopus oligosporusand incubated at 32°C for 26 h [34]. The fungal metabolism created during the fermentation causes changes in the composition of tempeh due to the increased protein degradation generating molecules of low molecular weight [35]. Some studies have reported that peptides, as bacteriocins, are generated from microorganisms isolated from tempeh and have an antibiotic effect [36].


4. Antimicrobial peptide action

The process of soy fermentation creates secondary metabolites, as antibiotics and peptides that have some biological activity beneficial to human health. Antimicrobial ability is one of the reported activities that secondary metabolites exhibit. It may be due to the peptides produced by protein hydrolysis present in the food or starter culture. It has been reported that Bacillus subtiliscan produce a wide range of antimicrobial compounds with an antagonistic effect against bacteria and fungi [12, 14, 37, 38]. It is known that Bacillus subtilisis able to create bioactive peptides. Some pathogenic microorganisms susceptible to these peptides are: Campylobacterspp, Clostridium botulinum, Listeria monocytogenes, Salmonella typhimurium, Staphylococcus aureus, Pseudomonas aeruginosa, Botrytis cinerea, Fusarium moniliforme, Micrococcus luteus, and S. typhimurium[39]. The action mechanism of the antimicrobial activity can be different between peptides. Their hydrophobic characteristics allow them to interact with the lipid layer of the cell membrane. Those peptides in close contact with the bacterial cell must cross the capsular polysaccharide to interact with the outer membrane. Once the peptides have connected with the plasma membrane, they can interact with the lipid bilayer [40]. Through the interaction with the bacterial membrane, peptides cover the cell surface and lipids are aggregated. In consequence, peptides interact with the membrane and destabilize it, leading to pore formation and disruption of the membrane, leading to cell lysis (Figure 1) [41, 42, 43]. In addition, peptides can produce indentations in the cell surface and induce micellization, disrupting the bacterial membrane [44]. On the other hand, an extensive presence of bubbles in bacterial cells promotes the release of intracellular material and, in consequence, antimicrobial peptides [45]. When peptides penetrate into the cells, they create clusters and aggregates, which promotes ion leakage from the cell [42]. The action mechanisms can depend on a number of physicochemical factors of the peptide’s structure, charge, chain length, amino acid composition, and amino acid sequence.

Figure 1.

Action mechanism of antimicrobial peptides (modified from Ruiz et al. [43]).


5. Microorganisms

The fermentation quality of soy foods is determined by the type of bacteria generated. Lactic acid bacteria are especially interesting because of their function. They provide flavor and protect against contamination by pathogenic microorganisms [24]. These bacteria can produce bacteriocins in fermented-soybean products that contribute to control the growth of microorganisms as Listeriasp. and Klebsiellaspp. Strain Bacillus subtilisis able to produce antibiotics and peptides as bacteriocins and lipopeptides with antimicrobial activity. This genus is a strong producer of hydrolytic enzymes that allow for the digestibility of fermented-soybean products [46]. The most common contamination in fermented products is caused by Bacillus cereus; this microorganism can produce enterotoxins on cooked soybeans, i.e., in kinema. However, only small amounts of enterotoxins were formed in the presence of a competitive dominance of Bacillus subtilis[47].

5.1 Lactic acid bacteria

Lactic acid bacteria are considered probiotic microorganisms thanks to the diverse beneficial effects they produce on human health. Still, they have also been proven to have antimicrobial activity against pathogenic bacteria [48]. Recent studies on probiotics have reported that fermented-soybean products have strong antibactericidal effects against pathogens transmitted by food [49]. These bacteria show inhibitive effects on many pathogenic organisms both in vivoand in vitro, including Salmonella, Shigella, Clostridium, Bacillus cereus, Staphylococcus aureus, Candida albicans, Listeria monocytogenes, Escherichia coli, and Campylobacter jejuni[50]. El-Sayed et al. [51] analyzed the antimicrobial activity of probiotic lactic acid bacteria during the fermentation process of soymilk. They found those microorganisms have an antagonistic effect against pathogenic agents as E. coliand S. aureus. Additionally, the fermentation process generates secondary metabolites as organic acids, hydrogen peroxide, and certain bacteriocins, which enhance the inhibitory capacity of pathogenic microorganisms. Bacteriocins are ribosomally synthesized antimicrobial peptides with inhibitory activity towards a wide range of pathogens [52]. Lactic acid bacteria isolated from Tungtap, a fermented species of Puntius, and Tungrymbai, a fermented-soy product, can produce bacteriocins. The bacterocins of lactobacillus, Pediococcusand Enterococcuspossess better inhibitory properties against pathogens than antibiotics. Bacteriocins have an inhibitory effect against β-lactamase greater than antibiotics, which is desired because this enzyme provides resistance to bacteria to be inhibited [53]. Streptococcus pyogenes, Enterococcus faecalis, Escherichia coli, Klebsiella pneumoniae, and Bacillus cereusare the main microorganisms inhibited by this type of bacteriocins produced from lactic acid bacteria.

5.2 Bacillus subtilisSN7

Bacillus subtilisstrain SN7 is isolated from meju, a fermented-soy product from Korea. Strain SN7 has an antimicrobial activity against pathogens as Bacillus cereusand is able to produce bacteriocins. This strain poses no risk to human health and is therefore widely recommended. It has been used in the fermentation of cheonggukjang. Bacillus subtilisSN7 efficiently inhibits the growth of Bacillus cereusvegetative cells and the inactivated germination of Bacillus cereusspores [54]. This is because when 4.2–4.3 log spores/mL of B. cereusATCC 14579 and 6.2–6.3 log colony forming units (CFU) /mL of B. subtilisSN7, were inoculated at 37° C for 24 h in tryptic soy broth, B. cereusis not detected at 12 h of culture. The antimicrobial effect of Bacillus subtilisSN7 is mainly due to its capacity in the production of bacteriocins, and these act directly on the cell wall of the bacteria causing death and lysis of the cell [55]. This suggests that Bacillus subtilisSN7 has a great potential as control agent of Bacillus cereusand starter culture in Cheonggukjang. It has a wide-spectrum antagonistic activity against Bacillus cereus, Bacillus subtilis, Bacillus licheniformis, Staphylococcus aureus, E. coliO157: H7, and Micrococcus luteus. However, after extended incubation periods, the antimicrobial activity can be inhibited since the antimicrobial compound is a protein and thus it is destroyed by proteolytic enzymes produced by the same Bacillus subtilisSN7. Most of the Bacillusstrains produce proteolytic enzymes at the end of the growth for spore extrusion through autocellular lysis [56]. The antimicrobial capacity produced by bacteriocin of Bacillus subtilisSN7 it can be inactivated by proteolytic enzymes but not by α-amylase or lipase. Mejucin, the bacteriocin produced by Bacillus subtilisSN7, has a sequence LGPQLNKGCATCSIGAACLVDGPIPDEIAG. The pH conditions do not affect the antimicrobial activity since Mejucin tolerates pH 3–9 and is stable between 4 and 37°C [54]. Mejucin modifies the cell membrane in such a way that its regeneration is not possible, and it also causes the leakage of intracellular components of Bacillus cereus[13].

5.3 Bacillussp. LM7

Bacillussp. LM7 is a microorganism isolated from Chungkookjang. During the stationary growth phase of Bacillussp. LM7 and soy fermentation, the microorganisms releases an antimicrobial substance called anti-LM7, which has been reported to be stable at pH 4–9 and 80°C for 30 min. The reported antimicrobial activity mainly affects gram-positive bacteria, including Bacillus cereusand Listeria monocytogenes, and inhibits certain types of fungal strains. The antimicrobial effect is associated to the generation of lipopeptides from two families, bacillomycin D and surfactin analogues [57], so anti-LM7 was considered a lipopeptide. Bacillomycin D is composed of L-Asn, D-Tyr, D-Asn, L-Pro, L-Glu, D-Ser, and L-Thr [58, 59]. Surfactin consists of a hydrophobic fatty acid and seven amino acids, including L-Asp, 2 L-Leu, L-Glu, L-Val, and 2 D-Leu. However, its efficiency is negatively affected by enzymes (trypsins, lipases, pepsins, or proteinase k). Chymotrypsin cleaves the amide bond on the carboxyl side of tyrosine, tryptophan, phenylalanine, and leucine. The protease hydrolyzes peptide amide bonds on the carboxyl side of glutamic and aspartic acids. Therefore, chymotrypsin and protease can inhibit the anti-LM7 activity by recognizing and hydrolyzing an amino acid in the peptide loop. Chymotrypsin can hydrolyze peptide bonds on the carboxyl side of Tyr, Trp, Phe and Leu and the protease Glu and ASP. Anti-LM7 isolated from chungkookjang has a potential use in environmental, pharmaceutical, and food-processing industries, and this can be used in dairy products and in the production of vegetables and meats as a preservative to increase the food’s shelf life [57]. It could also be an antibiotic source, considering the conditions under which its activity can be affected.

5.4 Bacillus subtilisSC-8

Bacillus subtilisSC-8 is a gram-positive bacterium that has been isolated from fermented soy. The microorganism inhibits the growth of Bacillus cereusspecies as Bacillus anthracis, Bacillus mycoides, Bacillus pseudomycoides, Bacillus thuringiensis, and Bacillus weihenstephanensis[60, 61]. Genes were also found on chromosome SC-8 of Bacillus subtilis(BSSC8_21740 to BSSC8_21920), these genes can code new antimicrobial peptides against B. cereus. [62]. As Bacillussp. LM7, Bacillus subtilisSC-8 can express surfactin, fengycin, and iturin. Fengycin is an antifungal that inhibits filamentous fungi, yeasts, and bacteria. Its structure is given by: Glu-D-Orn-D-Tyr-DaThr-L-Glu-D-Al/Val-L-Pro-L-Gln-L-Tyr-L-Ile. The iturin family includes bacillomycin, iturin, and mycosubtilin; they are cyclic lipoheptapeptides bound by a β-amino acid residue. The members of this family have a strong antibiotic property. Its structure is given by iturin A, FA-β-NH2-L-Asn-D-Tyr-D-Asn-LGln-L-Pro-D-Asn-L-Ser and iturin C, FA-β-NH2-L-Asp-D-Tyr-D-Asn-LGln-L-Pro-D-Asn-L-Ser [5].

5.5 Bacillus subtilisNT-6

Bacillus subtilisNT-6 has been isolated from natto; it is able to release AMPNT-6, an amphipathic peptide with a hydrophobic fatty acid section and a hydrophilic peptide section. The molecular structures of these lipopeptides are cyclic because the C-terminal peptide residues connect with the β-hydroxy fatty acid through the hydroxyl group of the peptide residue directly with a β-amino acid [63]. Peptide AMPNT-6 has antimicrobial characteristics within a wide pH range (2–12). It is thermally stable, even at 100°C during 20 min, and has excellent solubility in both oil and water. It is efficient not only against gram-positive and gram-negative bacteria but also against fungi [64, 65, 66]. Xu et al. [67] reported a study on AMPNT-6 against Vibrio parahaemolyticus. The antimicrobial efficiency of the peptide depends on time and concentration. AMPNT-6 has a high inhibitory effect on V. parahaemolyticusat a minimal inhibitory concentration (MIC) (1.25 mg/mL). The action mechanism is the result of the destruction of the cell wall, forming pores in the cell membranes. Peptide AMPNT-6 has also been studied to determine its capacity to reduce adhesion and alter Shewanella putrefacienspreformed biofilms in two different contact surfaces (shell of shrimp, stainless steel blade). At minimal inhibitory concentration of 3 mg/mL, it was able to eliminate the formation of biofilms and prevent bacteria from forming them again in a model using a 96-well polystyrene microplate. It has also been reported that AMPNT-6, decreases the amount of extracellular polymeric substances secreted by bacteria, which is beneficial, since these substances are the main component of the biofilm responsible for adhesion [68, 69] and can strengthen the interactions between bacterial cells and participate in the formation of bacterial colonies on the contact surface [70]. At MIC of 2 mg/mL, it prevents bacteria from adhering to the surface of the microplate to form biofilms in a 3 h period while the elimination of formed biofilms takes place at 24 h [71]. Staphylococcus aureusand enterotoxin B, have also been controlled by the AMPNT-6 peptide, this may be due to the fact that they have been reported to contain three main lipopeptides such as surfactin, fengycin and iturin, capable of producing pores in the membranes that do not generate strains resistant to drugs [67, 72, 73, 74]. The antimicrobial activity of the AMPNT-6 peptide is not affected by the conditions used in meat products (temperature 25–37°C, sodium chloride concentration 7–8%, pH 7.4–8.4, and sodium metabisulfite concentration 0.2–0.4%); therefore, it can be viable for application in meat products [66].

5.6 Bacillus subtilisHJ18-4

Bacillus subtilisHJ18-4 is a microorganism that has been isolated from buckwheat sokseongjang. It has an antimicrobial activity against Bacillus cereusand other pathogens [75]. To demonstrate the antimicrobial effect of B. subtilisagainst B. cereus, these microorganisms have been inoculated in Luria-Bertani broth at 30° C for 24 h. B. subtilishas been inoculated at different concentrations (0.125, 0.25, 0.5 and 1%) and B. cereusat 0.5%. The highest inhibitory effect that B. subtilisshowed against B. cereuswas 0.5 and 1%, the survival of B. cereusdecreases by 6.87–5.65 log CFU/mL, respectively [14]. In addition, gene expression has been used to prove the efficacy of the microorganism’s antimicrobial capacity. Eom et al. [14] reported a decrease in the expression of genes related to toxin of Bacillus cereusas groEL, nheA, nheC, and entFM with Bacillus subtilisHJ18-4, proving its antimicrobial capacity.

5.7 Bacillus subtilisSCK-2

Among the bacteria isolated from the traditional Korean paste of fermented soy Kyeopjang, Bacillus subtilisSCK-2 shows antimicrobial activity against Bacillus cereus[76]. Peptide AMPC IC-1 has been identified from Bacillus subtilisSCK-2. It is a 33-residue thermostable peptide of 13 amino acids (Cys, Asn or Asp, Gln or Glu, Ser, Ala, Pro, Gly, Arg, Thr, Val, Ile, Leu and Lys) and its molecular weight is 3.4–3.6 kDa [77]. It has antimicrobial properties against species from the Bacillus cereusgroup. In addition, AMPC IC-1 inhibits the growth of Bacillus cereusKCTC 3624, KCTC 3674, and KCTC 3711 at a concentration of 50 μg/mL for 24 h [78]. However, it is not efficient for other pathogenic microorganisms as Listeria monocytogenes, Salmonella enterica, Salmonella enteritidis, Staphylococcus aureus, and Escherichia coliO157:H7 [77]. The antimicrobial activity of AMPC IC-1 is more stable under neutral and alkaline conditions [78]. The interaction between this peptide and proteases and proteinase K reduce antimicrobial activity [12]. The antimicrobial action mechanism takes place through the permeation of the cell membrane [76].

5.8 Enterococcus faecium

Enterococcus faeciumis predominant in fermented foods, where it plays a key role thanks to its contribution to maturation and aroma development [79]. It is able to produce bacteriocins and has an inhibitory effect against pathogenic bacteria as Listeriasp., Staphylococcus aureus, Vibrio cholerae, Clostridiumsp., Bacillussp., and Helicobacter pylori[80, 81, 82, 83, 84, 85, 86]. Two bacteriocins (1 and 2) were obtained in tempeh from E. faeciumLMG 19827 and E. faeciumLMG 1982, respectively. Bacteriocins 1 and 2 have a molecular weight of 3.4 and 5.4 kDa. Their antimicrobial activity is mainly against L. monocytogenesand gram-positive indicators as Enterococcus faecalis, E. faecium, Carnobacterium divergens, C. piscicola, Lactobacillus brevis, L. pentosus, and Paralactobacillus selangorensis. The antimicrobial activity of bacteriocins is more stable after thermal treatment, except at alkaline pH values [36].

Enterococcus faeciumhas been isolated from chungkookjang. The strain is resistant against simulated gastrointestinal diseases. Strains S2C10 and S2C11 inhibit the viability of Listeria monocytogenesATCC 19113. L. plantarumKCTC 1048, Lactococcus lactisKCTC 1913, L. lactisKCTC 3769, Leuconostoc lactisATCC 19256, and Pediococcus acidilacticiKCTC 1627. The ability is probably due to bacteriocin production. This antimicrobial effect is not altered at pH 2–8; however, at pH 10, the activity is reduced and often affected by enzymes as lipase [87].

5.9 Lactococcussp. GM005

Another microorganism isolated from a fermented-soybean product (miso paste) is Lactococcussp. GM005, which can produce 9.6-kDa bacteriocins against L. sakei(JCM1157 [25, 88]. This bacteriocin has been called GM005 because of the strain it is originated in. It contains a high proportion of hydrophobic amino acid residues and lanthionine [89]. Bacteriocin GM005 is sensitive to trypsin, has shown antibacterial activity against a producer of nisin that is immune to it, stable to heat and neutral pH [25]. Colony forming units (CFU) per mL of L. sakeiJCM1157T have shown a decrease in their growth when treated with GM005 [25].

5.10 Bacillus subtilisE20

Cheng et al. [33] identified three peptides with antimicrobial activity. The peptides were isolated in a protein fraction from a solid-state fermentation of soy flour with Bacillus subtilisE20. These peptides showed an activity against Vibrio alginolyticusand V. parahaemolyticus.They have been identified as LSKKHEAALKAFTDAQKQ (2.01 kDa), LRFRAPAPVLRRIAKR (1.96 kDa), and HTSKALLDMLKRLGK (1.71 kDa). This last peptide has shown a more efficient antimicrobial activity. The minimum inhibitory concentration reported is 72 mM [90]. The growth inhibition of Vibriocan be by the interaction with the bacterial membranes that cause an increase in permeability [41, 91].

5.11 Bacillus nattoTK-1

Lipopeptides can be obtained from Bacillus nattoTK-1 in natto. The ability of Bacillus nattoTK-1 to express components with antibacterial and antifungal activities has been proven [92, 93]. The effect is due to the production of lipopeptides as fengycin, which affects the surface of the cell membrane, inhibiting the development of bacteria as E. coli, Salmonella typhimurium, and Staphylococcus aureusand fungi as Botrytis cinereaand Fusarium moniliforme[91, 93, 94]. However, the efficacy of inhibition against these microorganisms and other pathogens depends on the method of inoculation and the concentration of the antimicrobial [92].


6. Other peptides

Peptides isolated directly from soybeans have also proven to have antimicrobial activity. Peptides PGTAVFK and IKAFKEATKVDKVVVLWTA are protein sources from soy evaluated against Listeria monocytogenesand Pseudomonas aeruginosa. The long-chain peptide (IKAFKEATKVDKVVVLWTA) is more effective against both microorganisms at an inhibitory concentration of 37.2 μM. Still, peptide PGTAVFK does not significantly affect the development and proliferation of P. aeruginosabut inhibits L. monocytogenesat a concentration higher than 625 μM [95, 96]. PGTAVFK also has an antimicrobial activity against E. coliand S. aureusat a 31 μM concentration [97].

Peptides can also be produced by gastrointestinal digestion. Digestive enzymes hydrolyze proteins, producing peptides of different sizes and free amino acids. In in vitrosystems, pepsin is used to act at stomach level and randomly hydrolyzes peptide bonds to produce relatively large peptides, a mix of pancreatic acid and pancreatins. The pancreatins are a mix of different peptidases as trypsin, α-chymotrypsin, elastase, and carboxypeptidases. All the enzymes used, with the exception of trypsin, hydrolyze peptide bonds, producing peptides that differ in amino acid sequence [98]. Peptides (613 and 4932 Da) generated by acylated protein of soy seed and soymilk and subject to an in vitrodigestion process have proven to have biological effects. Their size is slightly larger when compared to peptides produced by animal digestion. Hydrolysis can be limited due to the presence of some antinutritional factors as trypsin, lectins, and oligosaccharides inhibitors and structural barriers (cell wall), which are scarcely digestible and inhibit diffusion of digestive enzymes [24, 99].

The analysis of the data base and algorithms of peptide sequences predicted the generation of 11 peptides obtained from soy-seed digestion, 17 from soymilk protein, and 8 from antimicrobial soymilk protein precipitate. The generation of nine of those peptides is the consequence of glycine and β-conglycinin digestion. The sequences of the antimicrobial peptides reported were: IIIAQGKGALGV, SGGIKLPTDIISKISPLPVLKEI, SGGIKLPTDIISKISPLPV, and MIIIAQGKGALGV, IIVVQGKGAIG [97].


7. Conclusion

Soy is an important source of bioactive compounds and proteins. Some bioactive peptides obtained from soy and its fermented and non-fermented products show different biological actions as the antimicrobial activity. The fermentation process allows for the generation of microorganisms, mainly Bacillus subtilis, able to inhibit the growth of pathogenic bacteria. These microorganisms can participate in the production of new peptides with antagonistic activity towards pathogens, resulting in cellular lysis. Peptides can also be produced by fermentation, starter cultures, or hydrolysis of soy proteins. These products can be incorporated as additives in the development of functional foods and pharmaceutical products for preservation and prevention of health risks.

© 2018 The Author(s). Licensee IntechOpen. This chapter is distributed under the terms of the Creative Commons Attribution 3.0 License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Rosalva Mora-Escobedo, María Del Carmen Robles-Ramírez, Alma Delia Román-Gutiérrez, Javier Castro-Rosas, Ciro Baruchs Muñoz-Llandes and Fabiola Araceli Guzmán-Ortiz (November 5th 2018). Peptides and Microorganisms Isolated from Soybean Sources with Antimicrobial Activity, Soybean - Biomass, Yield and Productivity, Minobu Kasai, IntechOpen, DOI: 10.5772/intechopen.81243. Available from:

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