IntechOpen was founded by scientists, for scientists, in order to make book publishing accessible around the globe. Over the last two decades, this has driven Open Access (OA) book publishing whilst levelling the playing field for global academics. Through our innovative publishing model and the support of the research community, we have now published over 5,700 Open Access books and are visited online by over three million academics every month. These researchers are increasingly working in broad technology-based subjects, driving multidisciplinary academic endeavours into human health, environment, and technology.
\\n\\n
By listening to our community, and in order to serve these rapidly growing areas which lie at the core of IntechOpen's expertise, we are launching a portfolio of Open Science journals:
All three journals will publish under an Open Access model and embrace Open Science policies to help support the changing needs of academics in these fast-moving research areas. There will be direct links to preprint servers and data repositories, allowing full reproducibility and rapid dissemination of published papers to help accelerate the pace of research. Each journal has renowned Editors in Chief who will work alongside a global Editorial Board, delivering robust single-blind peer review. Supported by our internal editorial teams, this will ensure our authors will receive a quick, user-friendly, and personalised publishing experience.
\\n\\n
"By launching our journals portfolio we are introducing new, dedicated homes for interdisciplinary technology-focused researchers to publish their work, whilst embracing Open Science and creating a unique global home for academics to disseminate their work. We are taking a leap toward Open Science continuing and expanding our fundamental commitment to openly sharing scientific research across the world, making it available for the benefit of all." Dr. Sara Uhac, IntechOpen CEO
\\n\\n
"Our aim is to promote and create better science for a better world by increasing access to information and the latest scientific developments to all scientists, innovators, entrepreneurs and students and give them the opportunity to learn, observe and contribute to knowledge creation. Open Science promotes a swifter path from research to innovation to produce new products and services." Alex Lazinica, IntechOpen founder
\\n\\n
In conclusion, Natalia Reinic Babic, Head of Journal Publishing and Open Science at IntechOpen adds:
\\n\\n
“On behalf of the journal team I’d like to thank all our Editors in Chief, Editorial Boards, internal supporting teams, and our scientific community for their continuous support in making this portfolio a reality - we couldn’t have done it without you! With your support in place, we are confident these journals will become as impactful and successful as our book publishing program and bring us closer to a more open (science) future.”
\\n\\n
We invite you to visit the journals homepage and learn more about the journal’s Editorial Boards, scope and vision as all three journals are now open for submissions.
\\n\\n
Feel free to share this news on social media and help us mark this memorable moment!
After years of being acknowledged as the world's leading publisher of Open Access books, today, we are proud to announce we’ve successfully launched a portfolio of Open Science journals covering rapidly expanding areas of interdisciplinary research.
\n\n\n\n
IntechOpen was founded by scientists, for scientists, in order to make book publishing accessible around the globe. Over the last two decades, this has driven Open Access (OA) book publishing whilst levelling the playing field for global academics. Through our innovative publishing model and the support of the research community, we have now published over 5,700 Open Access books and are visited online by over three million academics every month. These researchers are increasingly working in broad technology-based subjects, driving multidisciplinary academic endeavours into human health, environment, and technology.
\n\n
By listening to our community, and in order to serve these rapidly growing areas which lie at the core of IntechOpen's expertise, we are launching a portfolio of Open Science journals:
All three journals will publish under an Open Access model and embrace Open Science policies to help support the changing needs of academics in these fast-moving research areas. There will be direct links to preprint servers and data repositories, allowing full reproducibility and rapid dissemination of published papers to help accelerate the pace of research. Each journal has renowned Editors in Chief who will work alongside a global Editorial Board, delivering robust single-blind peer review. Supported by our internal editorial teams, this will ensure our authors will receive a quick, user-friendly, and personalised publishing experience.
\n\n
"By launching our journals portfolio we are introducing new, dedicated homes for interdisciplinary technology-focused researchers to publish their work, whilst embracing Open Science and creating a unique global home for academics to disseminate their work. We are taking a leap toward Open Science continuing and expanding our fundamental commitment to openly sharing scientific research across the world, making it available for the benefit of all." Dr. Sara Uhac, IntechOpen CEO
\n\n
"Our aim is to promote and create better science for a better world by increasing access to information and the latest scientific developments to all scientists, innovators, entrepreneurs and students and give them the opportunity to learn, observe and contribute to knowledge creation. Open Science promotes a swifter path from research to innovation to produce new products and services." Alex Lazinica, IntechOpen founder
\n\n
In conclusion, Natalia Reinic Babic, Head of Journal Publishing and Open Science at IntechOpen adds:
\n\n
“On behalf of the journal team I’d like to thank all our Editors in Chief, Editorial Boards, internal supporting teams, and our scientific community for their continuous support in making this portfolio a reality - we couldn’t have done it without you! With your support in place, we are confident these journals will become as impactful and successful as our book publishing program and bring us closer to a more open (science) future.”
\n\n
We invite you to visit the journals homepage and learn more about the journal’s Editorial Boards, scope and vision as all three journals are now open for submissions.
\n\n
Feel free to share this news on social media and help us mark this memorable moment!
\n\n
\n'}],latestNews:[{slug:"webinar-introduction-to-open-science-wednesday-18-may-1-pm-cest-20220518",title:"Webinar: Introduction to Open Science | Wednesday 18 May, 1 PM CEST"},{slug:"step-in-the-right-direction-intechopen-launches-a-portfolio-of-open-science-journals-20220414",title:"Step in the Right Direction: IntechOpen Launches a Portfolio of Open Science Journals"},{slug:"let-s-meet-at-london-book-fair-5-7-april-2022-olympia-london-20220321",title:"Let’s meet at London Book Fair, 5-7 April 2022, Olympia London"},{slug:"50-books-published-as-part-of-intechopen-and-knowledge-unlatched-ku-collaboration-20220316",title:"50 Books published as part of IntechOpen and Knowledge Unlatched (KU) Collaboration"},{slug:"intechopen-joins-the-united-nations-sustainable-development-goals-publishers-compact-20221702",title:"IntechOpen joins the United Nations Sustainable Development Goals Publishers Compact"},{slug:"intechopen-signs-exclusive-representation-agreement-with-lsr-libros-servicios-y-representaciones-s-a-de-c-v-20211123",title:"IntechOpen Signs Exclusive Representation Agreement with LSR Libros Servicios y Representaciones S.A. de C.V"},{slug:"intechopen-expands-partnership-with-research4life-20211110",title:"IntechOpen Expands Partnership with Research4Life"},{slug:"introducing-intechopen-book-series-a-new-publishing-format-for-oa-books-20210915",title:"Introducing IntechOpen Book Series - A New Publishing Format for OA Books"}]},book:{item:{type:"book",id:"356",leadTitle:null,fullTitle:"Laser Pulse Phenomena and Applications",title:"Laser Pulse Phenomena and Applications",subtitle:null,reviewType:"peer-reviewed",abstract:"Pulsed lasers are available in the gas, liquid, and the solid state. These lasers are also enormously versatile in their output characteristics yielding emission from very large energy pulses to very high peak-power pulses. Pulsed lasers are equally versatile in their spectral characteristics. This volume includes an impressive array of current research on pulsed laser phenomena and applications. Laser Pulse Phenomena and Applications covers a wide range of topics from laser powered orbital launchers, and laser rocket engines, to laser-matter interactions, detector and sensor laser technology, laser ablation, and biological applications.",isbn:null,printIsbn:"978-953-307-405-4",pdfIsbn:"978-953-51-4912-5",doi:"10.5772/881",price:139,priceEur:155,priceUsd:179,slug:"laser-pulse-phenomena-and-applications",numberOfPages:486,isOpenForSubmission:!1,isInWos:null,isInBkci:!1,hash:"0326c656c0dd5480c2dd15d22a772d18",bookSignature:"F. J. Duarte",publishedDate:"December 30th 2010",coverURL:"https://cdn.intechopen.com/books/images_new/356.jpg",numberOfDownloads:67464,numberOfWosCitations:54,numberOfCrossrefCitations:14,numberOfCrossrefCitationsByBook:1,numberOfDimensionsCitations:32,numberOfDimensionsCitationsByBook:2,hasAltmetrics:0,numberOfTotalCitations:100,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"March 30th 2010",dateEndSecondStepPublish:"April 27th 2010",dateEndThirdStepPublish:"September 1st 2010",dateEndFourthStepPublish:"October 1st 2010",dateEndFifthStepPublish:"November 30th 2010",currentStepOfPublishingProcess:5,indexedIn:"1,2,3,4,5,6,7,10",editedByType:"Edited by",kuFlag:!1,featuredMarkup:null,editors:[{id:"13752",title:"Dr.",name:"F. J.",middleName:null,surname:"Duarte",slug:"f.-j.-duarte",fullName:"F. J. Duarte",profilePictureURL:"https://mts.intechopen.com/storage/users/13752/images/system/13752.png",biography:"F.J. Duarte is a laser physicist based in Western New York, USA. He is the author and editor of several well-known books on tunable lasers including Dye Laser Principles (Academic, New York, 1990) and Tunable Laser Optics (Elsevier Academic, New York, 2003). His most recent edited work is Tunable Laser Applications, 2nd Edition (CRC, New York, 2009).\r\nDr. Duarte has made key experimental and theoretical contributions to the field of narrow-linewidth tunable laser oscillators. These include original oscillator architectures and the generalized multiple-prism grating dispersion theory. He has also pioneered the use of Dirac’s quantum notation in the description of generalized N-slit interference and classical optics phenomena. Currently, his research focuses on further developments of dispersive narrow-linewidth laser oscillators and very large N-slit laser interferometers.\r\nDr. Duarte’s contributions are cited in some 130 laser and optics books including several classics. He received the Engineering Excellence Award from the Optical Society of America, is a Fellow of the Australian Institute of Physics, and a Fellow of the Optical Society of America.",institutionString:"Interferometric Optics",position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"1",totalChapterViews:"0",totalEditedBooks:"2",institution:{name:"University of Alabama in Huntsville",institutionURL:null,country:{name:"United States of America"}}}],equalEditorOne:null,equalEditorTwo:null,equalEditorThree:null,coeditorOne:null,coeditorTwo:null,coeditorThree:null,coeditorFour:null,coeditorFive:null,topics:[{id:"1226",title:"Optoelectronics",slug:"optics-and-lasers-optoelectronics"}],chapters:[{id:"12537",title:"Pulse-Laser Powered Orbital Launcher",doi:"10.5772/13328",slug:"pulse-laser-powered-orbital-launcher",totalDownloads:3448,totalCrossrefCites:0,totalDimensionsCites:0,hasAltmetrics:0,abstract:null,signatures:"Hiroshi Katsurayma, Kimiya Komurasaki and Yoshihiro 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1. Introduction
Control of the pattern of cell division is essential for the proper development of multi-cellular organisms. In animal cells, cytokinesis is mediated by a contractile ring in which the cleavage force is produced by an acto-myosin system. Furthermore, the future site of cell division in animal cells (the site where contraction starts in the cell cortex) is determined by the position of the aster during the later stages of mitosis. In contrast, plant cytokinesis involves the assembly of a cell plate from Golgi-derived vesicles. The division site in plants (the cell cortex where the cell plate fuses with the parental cell walls) is defined by a band of cortical microtubules (MTs) – the preprophase band (PPB) of MTs – that mark the division site during prophase. The PPB MTs subsequently disassemble when the cells enter prometaphase. However, some positional information, or positional memory, is retained in the cell cortex/plasma membrane where the PPB of MTs was located, and the cell plate edge grows towards and fuses with this predetermined division site. Thus, how MTs demarcate the future division site during PPB development, and how the division site memory is created and maintained in the PPB region until the end of cytokinesis, are important questions related to the regulation of division plane positioning in plants.
Several potential cell division plane-positioning molecules have been identified, and these have been classified into ”positive memory“ and ”negative memory“ types of molecules. However, how these molecules contribute to the creation of positional memory information has yet to be determined. Early electron microscopists reported the presence of vesicles in the forming PPB regions, and it was suggested that these vesicles might contribute to the creation of a PPB memory site (cortical division zone) either via exocytosis or endocytosis. By using high-pressure freezing to preserve the cells for electron microscopical analysis, we have been able to demonstrate that the vesicles are generated by endocytosis, and with the help of electron tomography, we have been able to quantify the distribution of vesicles in the cell cortex. The latter analysis has demonstrated that clathrin-mediated endocytosis is enhanced in the PPB region compared to the cell cortex outside the PPB or in the cell cortex of interphase cells. Thus, creation of the cortical division zone appears to involve increased rates of clathrin-mediated endocytosis in the PPB region. Based on these results, we propose that removal of membrane proteins by endocytosis at the division site plays a critical role in the formation of PPB ”memory“ structures. In this chapter, we will discuss in greater detail how endocytosis at the future site of cell division contributes to the regulation of the plane of cell division in plants.
2. Creation and demarcation of the cortical division zone
Normally the PPB is a few micrometer wide and thus this cortical band region is broader than the exact site where the cell plate attaches. Because of this, Van Damme et al. (2011) have proposed the term cortical division zone to distinguish the cortical division site, the exact region where the cell plate attaces to the cell cortex. Here we use this term if we need to distinguish the former PPB region and the exact attachment site of the cell plate.
in plants
The division site is defined as the region where a new division plane is inserted into a cell at the end of cell division (Gunning, 1982). Since the division plane in animal cells is inserted centripetally from the cell cortex using a contractile ring, the cortical division site corresponds to a region where the cleavage furrow is initiated in the cell cortex. In plant cells, cell plate formation starts with the accumulation of Golgi-derived, cell plate-forming vesicles in the midplane of the phragmoplast MT array in the central region of the cell (Seguí-Simarro et al., 2004). Upon fusion of these vesicles, the cell plate starts to grow centrifugally until it reaches and then fuses with the plasma membrane at the cell division site, the PPB memory site. In the majority of plant cells, the final division plane is inserted in the plane defined by the equatorial plane (the plane where metaphase chromosomes arrange) existed in metaphase, and where the cell plate is initiated at the beginning of cell plate formation. This is not always the case. Figure 1 shows the process of cell division in a Tradescantia stamen hair cell where the equatorial plane developed in an oblique orientation (Fig. 1b). Subsequently, however, the cell plate was inserted transversely (Fig. 1e). When the mitotic apparatus of a Tradescantia stamen hair cell is displaced experimentally towards the distal end of the cell by centrifugation, the initially formed cell plate develops between the displaced daughter nuclei, but then gradually extends towards the cortical site where it would have been inserted if there had been no centrifugal treatment (Ôta, 1961). This experiment clearly demonstrated that the plant division site is determined prior to the separation of the chromosomes, and that the memory site, where the cell plate fuses to the parental cell wall, is maintained during and after the centrifugal treatment. When and how this cortical division site is established, and how it influences the positioning of the cell plate during cytokinesis remains to be elucidated.
2.1. Proteins involved in preprophase band (PPB) formation and maturation
The most prominent structural change in the region of the future cortical division site is the assembly of a PPB during the G2 and prophase stages of the cell cycle. The PPB is a band of MTs associated with vesicles in the cell cortex (Mineyuki, 1999). Pickett-Heaps & Northcote (1966a, b) provided the first description of the PPB, but did not provide an answer to the question whether the PPB predicts the division site or the position of the equatorial plane in metaphase. This problem was solved in a study of the PPB in onion guard mother cells. Onion guard mother cells are relatively small cells and the equatorial plane in metaphase orients obliquely, but the cell plate is inserted longitudinally (Miehe, 1899). In these cells, the PPB orients longitudinally, thereby predicting the future division site and not the orientation of the equatorial plane (Palevitz & Hepler, 1974). Misorientation of the division planes occurs in cells in which the PPBs are prevented from forming by experimental manipulation (Mineyuki et al., 1991a), as well as in mutant cells that cannot form PPBs (Traas et al., 1995).
Figure 1.
Cell division of a stamen hair cell of Tradescanta virginiana. (a) prophase, (b) metaphase, (c) anaphase, (d) just after the cell plate has reached the cell wall, (e) 18 min after (d), the cell plate becomes flatten. This cell is the same cell used in the experiment of Fig. 2 in Mineyuki & Gunning (1990). White arrows in (b) show the position of the equatorial plane. Stars (*) in (c) mark the spindle pole region. Rectangles colored yellow show the cortical division zone. N, nucleus; ch, chromosomes; cp, cell plate. Bar = 10 µm.
PPB MTs originate during the G2 phase in the form of a broad band (Fig. 2b), which narrows during prophase. The narrow MT band localizes to the region of the ultimate division site (Fig. 2c). This MT band disappears when the nucleus enters prometaphase but leaves behind positional information that aids in the subsequent orientation and function of the cell plate with the plasma membrane (Fig. 2d, e). Some MT associated proteins (MAPs) have been shown to be associated with PPBs, and studies on loss-of-function mutants have demonstrated that the MICROTUBULE ORGANIZATION 1 (MOR1) and CLIP-associated proteins (CLASP) are involved in the organization of the MTs in PPBs (Ambrose et al., 2007; Kawamura et al., 2006; Whittington et al., 2001). FASS/TONNEAU2 (TON2), a putative regulatory B” subunit of the Thr/Ser protein phosphatase 2A, and TONNEAU1 (TON1), a protein that interacts with centrin (CEN1) and is related to a human centrosomal protein, are also essential proteins for PPB formation (Camilleri et al., 2002; Traas et al., 1995). As discussed below in greater detail, actin plays a critical role in PPB formation, and the actin-depolymerising drug cytochalasin inhibits the narrowing of the MTs (Eleftheriou & Palevitz, 1992; Mineyuki & Palevitz, 1990).
Besides guiding the cell plate towards the cortical division zone, molecules associated with the PPB memory site also have the ability to induce cell plate flattening. For example, during cell division in Tradescantia stamen hair cells, the cell plate tends to be fluid and wrinkled (Fig. 1d) when the cell plate edges attach to the cortical division site, but flattens thereafter (Fig. 1e). The flattening process is delayed or stops when a cell plate fails to reach the correct cortical division zone (Mineyuki & Gunning, 1990).
Figure 2.
Schematic view of PPB development and the division plane insertion in plants. (a) interphase, (b) early PPB stage (G2~prophase), (c) late PPB stage (late prophase), (d) metaphase, (e) telophase, (f) after cell division. MT (green), microtubule; CW (light brown), cell wall; N (blue), nucleus; PM (pink), plasma membrane; CDZ (red), cortical division zone; ch, chromosome; cp, cell plate.
2.2. Candidate proteins of division site memory molecules
The PPB is considered to predict the future site of cell division in plant cells and to generate positional memory information that demarcates the cortical division zone after disappearance of the MTs. Several candidate molecules for the memory function of the cortical division zone have been described (Table 1). The first candidate molecule identified was actin. Although actin serves multiple functions during PPB development, actin filaments disappear from the PPB zone in late prophase, thereby generating an actin-depleted zone (ADZ) adjacent to the plasma membrane (Cleary et al., 1992; Liu & Palevitz, 1992). Since the ADZ remains after the disappearance of the MT band, the ADZ has been thought of as a kind of ”negative memory”. Another ”negative memory“ candidate is the kinesin-like molecule KCA1 (Vanstraelen et al., 2006), which also forms a KCA1 depleted zone (KDZ) in the same area as the ADZ. How these molecules are excluded from the cortical division zone, and how the ADZ and the KDZ are maintained during cell division remains to be determined.
Molecules such as TANGLED (TAN), a highly basic protein that can directly bind to MTs, and RanGAP1, a negative regulator of the small GTPase Ran, are accumulated in the PPB and remain there after the disappearance of the PPB MTs (Rasmussen et al., 2011; Walker et al., 2007; Xu et al., 2008). These are candidates of ”positive memory“ molecules. Together, the ”positive“ and ”negative“ memory molecules may be key players for guiding the cell plate to the predicted cortical division site. PHRAGMOPLAST ORIENTING KINESINs 1 and 2 (POK1, POK2), originally identified as potential partner of TAN in a yeast two-hybrid screen, are required for the correct localization of TAN and RanGAP1 to the PPB region (Müller et al., 2006), and the functional relationship between POK1/POK2 and TAN/RanGAP1 has been examined (Walker et al., 2007; Xu et al., 2008). TAN–interacting proteins DISCORDIA1 (DCD1) and ALTERNATIVE DISCORDIA1 (ADD1), maize homologs of Arabidopsis FASS/TON2, are two other proteins that persist at the cortical division zone after disappearance of the PPB MTs. Although DCD1/ADD1 are detectable in the cortical division zone of metaphase cells, they cannot be observed in the cortical division zone in anaphase (Wright et al., 2009).
Molecules, that appear in the cortical division zone just before the cell plate edges reach the plasma membrane, have also been identified. Adaptin-like protein, TPLATE and clathrin reappear in the cortical division zone when the cell plate edge almost reaches the cortical division site (Van Damme et al., 2006, 2011). Whether these molecules are associated with the edge region of the maturing cell plate (Seguí-Simarro et al., 2004) or with structures in the cortical division zone remains to be determined.
Based on the observation of cell plate flattening in Tradescantia stamen hair cells, Mineyuki and Gunning (1990) proposed that the PPB leaves behind factors involved in cell plate maturation. A MT-associated protein, AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9) decorates the PPB and phragmoplast MTs and reappears at the cortical division site when the outwardly growing phragmoplast contacts the cortical division site. AIR9, then moves inward on the young cell plate to form a torus-like structure. When the cell plate is inserted outside the former PPB site no AIR9 torus is formed, suggesting that AIR9 associates with proteins that are retained in the PPB site. For this reason, AIR9 is viewed as a candidate factor involved in the regulation of cell plate maturation (Buschmann et al., 2006). A cell wall hydroxyproline-rich glycoprotein (Hall & Cannon, 2002) may also play a role in cell plate maturation.
Molecules that mark the cortical division zone after the disappearance of PPB MTs
Molecules that appear in the cortical zone at the end of cell plate insertion
Candidates of negative memories
Candidates of positive memories
Actin (Liu & Palevitz, 1992; Cleary et al., 1992)
KCA1 (Kinesin-like protein: Vanstraelen et al., 2006)
TAN (Protein having basic MT-binding domain of vertebrate APC proteins: Walker et al. 2007)
RanGAP1 (RanGTPase activating protein: Xu et al., 2008)
DCD1/ADD1 (Maize homologus of Arabidosis FASS/TON2: Wright et al., 2009)
TPLATE (Adaptin-like protein: Van Damme et al., 2006)
Clathrin (Van Damme et al., 2011)
AIR9 (MT associated protein: Buschmann et al., 2006)
RSH (?) (Cell wall hydroxyproline-rich glycoprotein: Hall & Cannon, 2002)
Table 1.
Candidates molecules for modifiers of the cortical division zone.
3. Electron tomography of high-pressure frozen cells
Electron tomography is a powerful method for visualizing and quantitatively analyzing the ultrastructural features of cells in three dimensions (Frank, 1992). In the context of PPBs, electron tomography has enabled us to obtain quantitative information on the organization of cortical and cell plate-associated MTs, and on the types and the distribution of vesicles in large volumes of cytoplasm in defined cellular domains (Austin et al., 2005; Karahara et al., 2009; Seguí-Simarro et al., 2004). This method is particularly effective when employed in conjunction with cryo-fixation, which preserves transient membrane systems much better than chemical fixation. We selected epidermal cells of onion cotyledons for the analysis of membrane structures associated with PPBs, because PPB development in this cell type is well characterized (Mineyuki et al., 1989). Most notably, in the basal region of the cotyledons, the percentage of cells undergoing mitosis is relatively high. Specimen preparation was carried out as described previously (Karahara et al., 2009). In short, a basal part of the cotyledon was cut and immediately frozen using a high pressure freezer. The high pressure-frozen samples were freeze-substituted and then embedded in Spurr\'s resin (Murata et al., 2002). Our electron micrographs of transverse sections of high-pressure frozen/freeze-substituted onion epidermal cells showed exceptionally-well preserved cells at the ultrastructural level (Fig. 3). Late prophase cells with a narrow PPB can be distinguished from interphase cells based on the staining pattern of the chromosomes. After the staining of 250 nm-thick tangential sections with uranyl acetate and Reynold\'s lead citrate, colloidal gold particles were added to both sides of the grid as fiducial markers to align the series of tilted images. These thick tangential sections of outer epidermal cell wall regions were mounted in a tilt-rotate specimen holder and observed using either a high-voltage electron microscope operating at 750 kV, or an intermediate-voltage electron microscope operating at 300 kV. The images were taken from +60o to -60o at 1.5o intervals about two orthogonal axes and collected with a digital camera attached to the electron microscopes. Tomograms were computed for each set of aligned tilts using the R-weighted back-projection algorithm. Tomograms were displayed and analyzed with Imod, the graphics component of the IMOD software package (Kremer et al., 1996).
The use of electron tomography has enabled us to identify, map and model the pits, vesicles and MTs of PPB regions in three dimension with a much higher degree of resolution than is possible with conventional ultra-thin sections obtained using an ultramicrotome (Figs. 3a, b & 4). The specimen preparation procedures employed in this study produced characteristic, high-contrast images of the triskelion complexes and lattices associated with the clathrin-coated pits, as well as of the contents of the vesicles. Although most vesicles in the cell cortex examined in the tomographic images were either dark-core, clathrin-coated vesicles (Fig. 3e) or dark-core, non-coated vesicles (Fig. 3h), we did observe some dark-core vesicles with partial coats (Fig. 3f, g). This indicates that the dark-core, non-coated vesicles could be derived from the dark-core, clathrin-coated vesicles.
To test this postulated relationship, we have also quantitatively analyzed the distance between the center of the darkly stained clathrin-coated and non-coated vesicles and the plasma membrane. If the darkly stained, non-clathrin-coated vesicles were derived from clathrin-coated, endocytic vesicles, then, on average, they should be found at a greater distance from the plasma membrane than the clathrin-coated ones. As illustrated in Fig. 5, in the cytoplasm underlying PPBs, the non-coated, darkly stained vesicles were found to be further away from the plasma membrane (74.4 ± 2.6 nm, mean ± SEM, n=168) than the clathrin-coated vesicles (52.8 ± 6.4 nm, mean ± SEM, n=29). This supports the idea that the non-coated, darkly stained vesicles were the uncoated form of the clathrin-coated vesicles on the way to endosomal compartments.
To confirm that clathrin molecules are present in the PPB, we examined the localization of clathrin in interphase and prophase cells of onion epidermal cells by immunofluorescent microscopy. The anti-clathrin heavy-chain antibodies cross-reacted with two types of intracellular structures in the onion epidermal cells, large, brightly stained objects and small, dim structures. The small, dim fluorescent structures seen in the confocal images correspond to the clathrin-coated pits and vesicles seen in the cell cortex of thin-sectioned cells (see Fig. 6 in Karahara et al., 2009). We have roughly quantified the frequency of the anti-clathrin stained, small, dim fluorescent dots observed in the PPBs of cells visualized by immunofluorescence microscopy (see Table S1 in Karahara et al., 2009). However, because the number of clathrin-containing dim fluorescent dots per square micron was smaller than the number of clathrin-coated pits and vesicles determined by electron tomography, one fluorescent dot may in some instances correspond to a cluster of several clathrin-coated pits and vesicles (Fig. 4a, circles of dashed blue lines).
Figure 3.
Tomographic images of a tangentially-sectioned PPB in a late prophase onion epidermal cell. The tomogram contained a total of 110 slices, with the higher slice numbers showing areas closer to the plasma membrane. Structures 1 and 2: Clathrin lattices associated with shallow pits. Structures 3 and 4: Two cortical MTs. Structure 5: A detached clathrin-coated vesicle. Structures 6 and 7: Partially uncoated and non-coated dark vesicles. Structure 8: Horseshoe-shaped plasma membrane infoldings. (a, b) Two images of 1.42-nm thick tomographic slices. Inset: overview electron micrograph of the 250 nm section used to make the tomogram. (c, d) Higher magnification tomographic slices images of a horseshoe-shaped plasma membrane infoldings shown in the black rectangular in (b). (c) (slice 54) and (d) (slice 60) are different sections through the same horseshoe structure framed in (b). (e-h) Gallery of 21.3-nm thick, composite tomographic slice images illustrating the morphological similarities between clathrin-coated (a), partially-coated (b, c) and non-coated (d) dense-core vesicles. Bars =(a, b) 1 µm, (c, d) 1 µm, (e-h) 50 nm and (inset Figure in (a)) 10 µm. Figure adapted from Karahara et al. (2009).
Figure 4.
Tomography-based reconstructions of the cortical region at the nuclear level (i.e. PPB region) of an interphase cell (a), at the PPB region of a late prophase cell (b). ccv, clathrin coated vesicle (bright red); ccp, clathrin-coated pit (deep red); ncv, non-coated vesicle (green); mt, MT (purple); pm, plasma membrane (yellow). Clusters of several clathrin-coated pits and vesicles shown in circles of blue broken line, which may correspond to fluorescent dots seen in immunofluorescence photographs. Bar = 1 µm. Figure modified from Karahara et al. (2009).
Figure 5.
Histograms illustrating the distances between the center of the dark-core vesicles (clathrin-coated and non-coated) and the plasma membrane as measured in tomograms of late prophase cells. Open column, clathrin-coated vesicle; closed column, non-coated vesicle.
4. Endocytosis at the future site of cell division
Clathrin-mediated endocytosis is an attractive mechanism for locally changing the composition of the plasma membrane at the PPB site, because clathrin-coated pits are known to concentrate specific types of membrane molecules prior to budding from the plasma membrane (Bonifacino & Traub, 2003; Chen et al., 2011; Kirchhausen, 2000). The original term for endocytosis in plant cell was pinocytosis (Conner & Schmid, 2003), which included both clathrin-mediated and clathrin-independent endocytosis. The former one is considered to be the major pathway while the importance or even existence of the latter one is still being debated (Chen et al., 2011). Clathrin-mediated endosytosis in plants has been shown to involve molecules, such as adaptor proteins (Holstein, 2002; Takano et al., 2010; Van Damme et al., 2011), accessory adaptor proteins (Bar & Avni, 2009), dynamins (Bednarek & Backues, 2010), small GTPases (Naramoto et al., 2010), actin filaments (Bar et al., 2009; Lam et al., 2001), as well as post-translational protein modifications such as phosphorylation and ubiquitination (Chen et al., 2011). TPLATE, an adaptor-like protein, also appears to participate in endocytic activities associated with cell plate formation during cytokinesis (Van Damme et al., 2004, 2006, 2011).
4.1. Endocytic membrane structures in the PPB region
Quantitative analysis of the distribution of the clathrin-coated pits in the cortical region closest to the nucleus of late prophase and of interphase cells showed that the average frequency of clathrin-coated pits between the PPB (nuclear) and the non-PPB (extra nuclear) regions of the plasma membrane was reduced in the non-PPB domains (see Figure 4 in Karahara et al., 2009). Furthermore, the average frequencies of dark-core, clathrin-coated and non-coated vesicles in the cytoplasm underlying the external wall at the nuclear (PPB) and extra nuclear (non-PPB) levels of late prophase cells, and those at the nuclear level of interphase cells, demonstrated that in late prophase cells the frequency of the clathrin-coated vesicles underlying the PPB region was 3.7 fold higher than in the region outside the PPB. On the other hand, the frequency of the dark-core, clathrin-coated vesicles in the PPB region of late prophase cells was two-fold higher than in the interphase cells, and the frequency of dense-core, non-coated vesicles in late prophase cells was over three-fold higher compared to interphase cells (see Table 1 in Karahara et al., 2009). These data demonstrate that the PPB regions are sites of endocytic activity mediated by clathrin-coated vesicles.
To determine whether some of the dense core vesicles underlying the thicker, cuticle-covered outer cell wall of the epidermal cells could be secretory vesicles, we counted all of the vesicles with dark cores in the cortical cytoplasm underlying the inner and outer cell wall regions in serial thin sections of cells sectioned in the plane of their PPBs. No significant differences in the frequency of dark-core vesicles underlying inner and outer cell walls in the PPB region and in the non-PPB regions was observed. However, we did confirm the noted increase in vesicle frequency in the cytoplasm underlying the PPB, both adjacent to the thick outer and the thinner inner cell walls of the epidermal cells (see Table 2 in Karahara et al., 2009).
In plants, endocytosed vesicles have been shown to be transported via the trans Golgi network (TGN) to multivesicular bodies (MVBs), where both membrane and cargo molecules are sorted for recycling or for degradation in vacuoles (Haas et al., 2007; Kang et al., 2011; Reyes et al., 2011; Viotti et al., 2010). The onset of clathrin vesicle-mediated endocytosis from cell plates leads to a temporary increase in MVBs in apical meristem cells of Arabidopsis thaliana (Seguí-Simarro & Staehelin, 2006). However, in our study of onion epidermal cells we have observed few MVBs in the cortical cytoplasm (Fig. 6) and have been unable to detect any significant increase in MVBs in the PPB (Table 2). This suggests that the plasma membrane molecules endocytosed from the PPB membrane domains could be recycled back to the plasma membrane via the TGN and not transferred to the MVBs and vacuoles for degradation.
Figure 6.
Electron micrograph of a thin sectioned multivesicular body (MVB) in a late prophase onion epidermal cell. The MVB contains intraluminal vesicles (arrow). Characteristic electron dense patches are seen on the surface of the MVB membrane (arrowheads). Schematic illustration depicting the MVB is shown (inset). Bar = 50 nm.
interphase
late prophase
P (cell stage comparison)
nuclear level
0.16 ± 0.07
0.20 ± 0.10
0.59 (z=-0.53)
extra nuclear level
0.23 ± 0.06
0.11 ± 0.06
0.22 (z=-1.20)
P (level comparison)
1.00 (z=0.00)
0.77 (z=0.29)
Table 2.
Average frequency of MVBs observed in PPB (inner and outer cortical regions at nuclear level in late prophase cell) and in non-PPB cortical region (inner and outer cortical regions at extra nuclear level in late prophase cell and inner and outer cortical regions in interphase cell) determined from serially thin cross-sections of onion epidermal cells. The frequency of MVBs was expressed as numbers of MVBs per µm3 (mean ± SEM, n=6). Thickness of each section was 70-90 nm. The Mann-Whitney U-test (two-tailed) was performed at each level. Schematic illustration depicting the plane of the sections is shown, which is adapted from Karahara et al. (2009).
Enhanced rates of endocytosis confined to PPB regions has also been observed in FM4-64 uptake studies in tobacco BY-2 cells (Dhonukshe et al., 2005). However, in our study, both the tomographic data and immunofluorescent microscopy with anti-clathrin antibodies clearly showed that the frequency of clathrin-bearing structures (clathrin-coated pits and vesicles) does not decrease abruptly at the edge of the PPB region but decreases gradually. Thus, our tomographic models demonstrate that a significant amount of the clathrin-bearing structures are also formed in the region adjacent to the PPB MTs (see Fig. 4 in Karahara et al. 2009). Based on this observation we have postulated that the formation of clathrin-coated pits is not tightly coupled to PPB MTs. Instead, the observed distribution of the MTs and of the endocytic vesicles in the PPB region can be better explained by the hypothesis that the local removal of selected molecules from the plasma membrane via endocytosis creates a membrane gradient in the PPB region that stimulates the assembly of MTs in that region. In this context, the function of the PPB MT array might be both to create a planar reference structure and an associated membrane domain in which the molecules involved in defining the division site can become organized. Therefore, the PPB region can be defined not only as a localized array of MTs but also as a localized region of clathrin-mediated endocytic activity. The fact that the PPB-associated p34cdc2 kinase homolog (A-type cyclin-dependent kinase CDKA;1) forms a band that is narrower than the PPB (Mineyuki, 1999; Mineyuki et al., 1991b) is consistent with this idea.
4.2. Exocytic membrane structures in the PPB region
The outer tangential walls of epidermal cells are considerably thicker than the inner walls. In addition, the outer walls are covered by a cuticle. Since it is possible that there is a difference in secretory activity between the outer and the inner walls in epidermal cells, secretory activities were assessed inside and outside of the PPB region. When a secretory vesicle fuses with the plasma membrane of a plant cell, the vesicle collapses and forms a characteristic, horseshoe-shaped infolding (Staehelin & Chapman, 1987). These horseshoe-shaped membrane structures can be identified in cryofixed and freese-substituted cells and used as a diagnostic tool for assessing secretory activities (Fig. 3c and d). We have analyzed the distribution of horseshoe-shaped structures in serial thin-sectioned onion epidermal cells and have demonstrated that there was no significant difference between the frequency of horseshoe-shaped structures in the cell cortex at the nuclear level as well as at the extra-nuclear level in the late prophase cells (i.e. PPB region) and in the interphase cells (see Table 3 in Karahara et al., 2009). It has been reported that in 10% of tobacco BY-2 cells there is an increase in Golgi stacks underlying the PPB (Dixit & Cyr, 2002). To determine if onion epidermal cells also accumulate Golgi stacks in the cortical cytoplasm underlying the PPB, we have analyzed the distribution of Golgi stacks in our serial thin-sectioned cells and found that there was no significant difference between the frequency of Golgi stacks in the cell cortex at the nuclear and the extra-nuclear level in late prophase cells and interphase cells (see Table 4 in Karahara et al., 2009).
In a recent study of tobacco BY-2 cells, Toyooka et al. (2009) have described what they claimed was a new exocytic structure, and which they called secretory vesicle cluster. However, as demonstrated in a recent electron tomography study, the so-called secretory vesicle clusters are free TGN cisternae that release their vesicles by means of cisternal fragmentation prior to the fusion of the individual secretory vesicles with the plasma membrane (Kang et al., 2011).
By quantifying the frequency of secretory structures we have demonstrated that the number of secretory events inside and outside of the PPB is essentially the same and that at this stage of the cell cycle the number of secretory events is low. The paucity of secretory structures observed in the PPB region is also consistent with the conclusion of Dixit and Cyr (2002) that Golgi secretion is not required for marking the PPB site.
4.3. Role of endocytosis in the establishment of the cortical division zone
The discovery that PPB formation involves increased rates of endocytosis at the PPB zone leads to the question as to what types of plasma membrane molecules could be selectively retrieved from this zone by means of the clathrin-coated vesicles. If molecules, that are necessary for the attachment of actin filaments or KCA1 molecules to the plasma membrane were selectively removed by endocytosis, then this could lead to the formation of actin or KCA1 depleted zones. One class of candidate proteins might be the plasma membrane-associated, actin filament-nucleating proteins called formin homology (FH) proteins (Banno & Chua, 2000; Favery et al., 2004). Several plant formins have been shown to have the ability to nucleate actin filaments, and overexpression of AtFH1 induces the formation of arrays of actin cables that project into the cytoplasm from the plasma membrane (Cheung & Wu, 2004). Thus, one possible function of the enhanced endocytic activity at forming PPBs might be the retrieval of actin-nucleating/binding proteins from these plasma membrane domains to create an actin-free zone to which the expanding cell plate is guided and where it can fuse. A similar function for the removal of KCA1 can also be envisaged. Together, our data suggest a mechanism for how endocytosis could help create a “negative memory” structure in the PPB region of preprophase cells.
5. Effects of brefeldin A on the formation of clathrin-coated membrane vesicles at the future division site
It is known that brefeldin A (BFA) interferes with the functioning of Arf proteins, which are important both for the assembly of COPI as well as for clathrin-coated vesicles that are formed both on TGN cisternae and at the plasma membrane (Nebenführ et al., 2002). To determine if BFA can also inhibit the endocytosis events associated with PPB formation, we examined the effects of BFA on the formation of clathrin-coated pits and vesicles as well as dark core vesicles in the PPB regions of epidermal cells. For the BFA treatment, we made a stock solution in methanol and diluted it in an aqueous solution of 0.1 M sucrose to achieve an effective working concentration of 100 µM BFA. The control solution contained 0.2% (v/v) methanol and 0.1 M sucrose. Onion seedlings were treated with the solution for 20 minutes before high-pressure freezing. To evaluate the responses of Golgi stacks to BFA treatment, three separate tissue regions (each including 5-6 cells) were selected, and the numbers of normal and BFA-perturbed Golgi stacks were determined.
Figure 7.
Effects of BFA on the Golgi architecture and on the density of clathrin-coated pits and of clathrin-coated and non-coated, dark vesicles in the PPB zone of the cytoplasm of onion epidermal cells. (a, b) Electron micrographs of thin sections showing Golgi architecture observed in a control (a) and a BFA-treated (100 µM for 20 min) (b) onion epidermal cell at the nuclear level. (c, d) Tomography-based reconstructions of the cortical region of a control (c) and a BFA-treated (d) late prophase cell. ccv, clathrin coated vesicle (bright red); ccp, clathrin-coated pit (deep red); ncv, non-coated vesicle (green); mt, MT (purple); pm, plasma membrane (yellow). Bar = (a, b) 0.7 µm and (c, d) 1 µm.
After treatment with BFA for 20 min, the onion epidermal cells contained a mixture of both normal looking and BFA-perturbed Golgi (Fig. 7a, b). In particular, the normal looking Golgi, which made up 31 ± 3 % (mean ± SEM) of the total Golgi population, displayed polar stack architecture together with one or several TGN cisternae, and resembled control Golgi (Fig. 7a). In contrast, the BFA-perturbed Golgi (69 ± 3 %) consisted of stacks that lacked a polar architecture, and whose cisternae resembled wider than normal and curved trans cisternae (Fig. 7b). Many secretory-type vesicles (84.3 ± 3.5 nm (diameter), mean ± SEM, n=73) were also seen in the vicinity of the altered stacks. In contrast to the variable appearance of the Golgi/TGN units in the BFA-treated cells, the responses of the endocytic membrane compartments to BFA were both pronounced and consistent.
Figure 8.
Average densities of clathrin-coated pits and vesicles at the nuclear level of late prophase (PPB region) of BFA-treated (100 µM for 20 min) cells. The results are based on measurements made on tomographic data sets. The frequency is expressed as number of pits per µm2 in the case of clathrin coated pits, and numbers of vesicles per µm3 in the case of vesicles (mean ± SEM; n=3). The Mann-Whitney U-test (two-tailed) was used to determine whether the difference were statistically significant compared with the control. *; P=0.0495, z=-1.964.
The number of clathrin-coated pits was decreased by ~90%, the number of clathrin-coated vesicles by ~80%, and the number of non-coated, dark-core vesicles by 67% (Fig. 8), consistent with the hypothesis that these three structures are causally related and involved in the endocytic pathway. By limiting the exposure time of the seedlings to BFA to 20 min, we have been able to differentially perturb the secretory and endocytic pathways, and thereby obtain data that are consistent with the hypothesis that the dense-core, non-coated vesicles underlying the plasma membrane are derived from clathrin-coated pits and vesicles that originate at the plasma membrane, and that they are not Golgi-derived secretory vesicles.
6. Conclusion
How the PPB marks the future site of cell division has been the subject of many studies and discussions since its discovery in 1966 (Pickett-Heaps & Northcote, 1966a, b). In a recent paper, we have quantified the distribution of clathrin-coated pits and vesicles as well as of secretory structures during PPB formation in onion epidermal cells using a combination of high-pressure freezing and electron tomography techniques. This quantitative characterization demonstrated that the rate of endocytosis is enhanced in PPB regions and suggests that the reported changes in composition of the plasma membrane of PPB regions could be brought about by the selective removal of specific plasma membrane molecules via BFA-sensitive, clathrin-coated pits and vesicles. One possible function of the enhanced endocytic activity at forming PPBs might be the retrieval of actin-nucleating/binding proteins or KCA1 from these plasma membrane domains to create membrane zones that are depleted of such molecules. In turn, these modified plasma membrane regions could help guide the expanding cell plate to the division site and facilitate fusion of the cell plate margins to that site (Karahara et al., 2010). Thus, endocytosis appears to play an essential role in the creation of PPB "memory" structures in plants.
\n',keywords:null,chapterPDFUrl:"https://cdn.intechopen.com/pdfs/37710.pdf",chapterXML:"https://mts.intechopen.com/source/xml/37710.xml",downloadPdfUrl:"/chapter/pdf-download/37710",previewPdfUrl:"/chapter/pdf-preview/37710",totalDownloads:2148,totalViews:150,totalCrossrefCites:2,totalDimensionsCites:4,totalAltmetricsMentions:0,impactScore:1,impactScorePercentile:56,impactScoreQuartile:3,hasAltmetrics:0,dateSubmitted:"December 8th 2011",dateReviewed:"April 17th 2012",datePrePublished:null,datePublished:"July 6th 2012",dateFinished:"July 4th 2012",readingETA:"0",abstract:null,reviewType:"peer-reviewed",bibtexUrl:"/chapter/bibtex/37710",risUrl:"/chapter/ris/37710",book:{id:"2617",slug:"molecular-regulation-of-endocytosis"},signatures:"Ichirou Karahara, L. Andrew Staehelin and Yoshinobu Mineyuki",authors:[{id:"146804",title:"Dr.",name:"Yoshinobu",middleName:null,surname:"Mineyuki",fullName:"Yoshinobu Mineyuki",slug:"yoshinobu-mineyuki",email:"mineyuki@sci.u-hyogo.ac.jp",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",institution:null},{id:"148613",title:"Dr.",name:"Ichirou",middleName:null,surname:"Karahara",fullName:"Ichirou Karahara",slug:"ichirou-karahara",email:"karahara@sci.u-toyama.ac.jp",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",institution:null},{id:"148615",title:"Prof.",name:"Andrew",middleName:null,surname:"Staehelin",fullName:"Andrew Staehelin",slug:"andrew-staehelin",email:"Staeheli@Colorado.EDU",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",institution:null}],sections:[{id:"sec_1",title:"1. Introduction",level:"1"},{id:"sec_2",title:"2. Creation and demarcation of the cortical division zoneNormally the PPB is a few micrometer wide and thus this cortical band region is broader than the exact site where the cell plate attaches. Because of this, Van Damme et al. (2011) have proposed the term cortical division zone to distinguish the cortical division site, the exact region where the cell plate attaces to the cell cortex. Here we use this term if we need to distinguish the former PPB region and the exact attachment site of the cell plate. in plants",level:"1"},{id:"sec_2_2",title:"2.1. Proteins involved in preprophase band (PPB) formation and maturation",level:"2"},{id:"sec_3_2",title:"2.2. Candidate proteins of division site memory molecules",level:"2"},{id:"sec_5",title:"3. Electron tomography of high-pressure frozen cells",level:"1"},{id:"sec_6",title:"4. Endocytosis at the future site of cell division",level:"1"},{id:"sec_6_2",title:"4.1. Endocytic membrane structures in the PPB region",level:"2"},{id:"sec_7_2",title:"4.2. Exocytic membrane structures in the PPB region",level:"2"},{id:"sec_8_2",title:"4.3. Role of endocytosis in the establishment of the cortical division zone",level:"2"},{id:"sec_10",title:"5. Effects of brefeldin A on the formation of clathrin-coated membrane vesicles at the future division site",level:"1"},{id:"sec_11",title:"6. Conclusion",level:"1"}],chapterReferences:[{id:"B1",body:'AmbroseJ. C.ShojiT.KotzerA. M.PighinJ. A.WasteneysG. O.\n\t\t\t\t\t2007\n\t\t\t\t\tThe Role of Endocytosis in the Creation of the Cortical Division Zone in Plants\n\t\t\t\t\tThe Plant Cell, 19\n\t\t\t\t\t27632775 .'},{id:"B2",body:'AustinJ. R. I.Seguí-SimarroJ. M.StaehelinL. A.\n\t\t\t\t\t2005\n\t\t\t\t\tThe Role of Endocytosis in the Creation of the Cortical Division Zone in Plants\n\t\t\t\t\tJournal of Cell Science, 118\n\t\t\t\t\t38953903 .'},{id:"B3",body:'BannoH.ChuaN. 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S.MüllerS.MeierI.\n\t\t\t\t\t2008\n\t\t\t\t\tThe Role of Endocytosis in the Creation of the Cortical Division Zone in Plants. Proceedings of the National Academy of Sciences USA, 105\n\t\t\t\t\t1863718642 .'}],footnotes:[{id:"fn1",explanation:"Normally the PPB is a few micrometer wide and thus this cortical band region is broader than the exact site where the cell plate attaches. Because of this, Van Damme et al. (2011) have proposed the term cortical division zone to distinguish the cortical division site, the exact region where the cell plate attaces to the cell cortex. Here we use this term if we need to distinguish the former PPB region and the exact attachment site of the cell plate."}],contributors:[{corresp:null,contributorFullName:"Ichirou Karahara",address:null,affiliation:'
University of Toyama,, Japan
'},{corresp:null,contributorFullName:"L. Andrew Staehelin",address:null,affiliation:'
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1. Introduction
Oil well drilling operation is a common and important process in the petroleum industry. Drilling fluid is an essential operational fluid that plays an exceptional part in drilling engineering. In a rotary drilling operation, drilling fluids are circulated continuously in the wellbore and drilling string [1]. Drilling mud serves a variety of functions, including cleaning and transporting the borehole, maintaining the borehole integrity, reducing formation damage, and cooling and lubricating the tools. Water-based muds are popular due to their low cost and environmental protection requirements. It generally comprises water, clay, and other chemical additives for different purposes.
Various problems are encountered during drilling a wellbore, including clay swelling, shale instability, bit balling, drill string accretion, high torque and drag, differential sticking, and fluid losses. These issues put a substantial cost on the overall drilling operation. These issues further increase with the increase in the wellbore depth. In addition, the conventional muds containing clay, weighting agents, and pH controllers could not be applied in such conditions. This is due to the interaction of such fluids with the clay minerals resulting in the variation in the mechanical properties by clay swelling. Hence, the design and selection of appropriate mud additives are the most critical factors that need to be considered. Oil-based muds (OBMs) are conventionally preferred due to their better thermal stability and nonreactive nature but due to the environmental concerns and their higher costs make them uneconomical. Thus, high-performance water-based containing eco-friendly additives are preferred. The concept of high-performance water-based drilling mud has been suggested for decades. It is a water-based drilling mud with acceptable rheology, minimal filtrate loss, high shale inhibition, good lubricity, and plugging properties [2].
The high-performance water-based mud (HPWBM) system was developed to enhance WBM performance while also providing an eco-friendly alternative to oil-based muds (OBM) while mimicking OBM drilling features. Various laboratory and field applications confirmed the HPWBM in replacing OBM by efficaciously accomplishing the objectives. HPWBMs have been recently developed as OBM alternatives, although not all kinds of HPWBM have been able to replace OBM on more complex wells. With the ever-increasing push for greater environmental performance and greater restrictions on the disposal of OBM cuttings, the petroleum industry is trying to design a WBM that can replicate OBM’s performance [3].
High-performance muds are particularly advantageous to conventional water-based systems because they provide faster penetration rates, enhanced hole cleaning, greater shale inhibition, and improved wellbore stability. The high-performance muds can deliver appropriate rheology and fluid stability under HTHP conditions, withstand high solids loading and deliver a high tolerance to brine or salt contamination, so the high-performance fluid is recommended for drilling the gypsum-salt formations and the reservoirs with natural fractures and inter-bedded shale. Such muds only tolerate operating temperatures up to 300°F because they depend on biopolymer-based viscosifiers. Deeper exploration in extreme high-temperature reservoirs (>300°F) requires new drilling fluid technologies.
2. Drilling mud properties
The success of any drilling fluid is dependent on the composition of the mud additives, which alters the mud properties. The two most common properties, including rheological and filtration, are primarily controlled while designing a drilling mud. Both properties can be improved with the utilization of mud additives. Various additives are added to the drilling to maintain the mud rheological and filtration characteristics. During drilling of the pay zone section, various polymers are added to replace bentonite to minimize the damage due to solids intrusion into the pay zone section. Such bentonite-free muds can form a thin and removable filter cake on the borehole wall and thus reduces the formation damage. Some of the most commonly used biopolymers are xanthan gum, guar gum, diutan gum, cellulose, lignins, and starches.
Generally, the viscosity is maintained lower for such muds, but more focus is paid to the filtration characteristics. It is worth mentioning that most water-based mud has shown best fitting with power-law and Herschel-Bulkley model. The laboratory experiments and field applications have observed that the flow behavior index (n) and consistency index (k) are the primary parameters controlling the cuttings transportation. The lower the flow behavior index and the higher the consistency index will perform better in cuttings transportation.
3. Mud properties modification
Two key parameters of drilling mud are generally investigated, including rheological and mud filtration. Mud rheological properties include plastic viscosity (PV), apparent viscosity (AV), gel strength (GS), yield point (YP), and yield stress (YS), while filtration properties consist of fluid loss volume, filter cake thickness, porosity, and permeability. Both the properties are dependent on the proper mud composition. The clay and polymeric materials generally enhance mud rheology, while the fluid loss additives such as starch and other nano-based materials reduce the fluid loss and cake thickness. Starch is a commonly used additive for improving both the rheological and filtration characteristics of mud.
Shale inhibition is another primary factor that requires attention during the mud design. Wellbore instability due to shale swelling and fluid loss of drilling mud is the main challenge the oil and gas industry faces. Shale is generally a water-sensitive material and causes swelling resulting in other drilling issues. Different additives, including salts and other amine-based materials, have been tested to improve shale stability. Several studies have been conducted to modify mud properties. For instance, a water-based mud was developed using an appropriate amine derivative, poly-ethoxylated alkyl diamine as a potential shale inhibitor agent instead of other conventional alternatives. The developed mud has optimally improved the performance of previously formulated HPWBMs [4].
Shale inhibition of amine derivative was examined using a new procedure, namely WSP, which showed better performance in bentonite-based mud systems. The system was found appropriate and an excellent alternative to OBM and SBM when tested in the South China Sea deepwater well. The mud displayed better performance by excellent shale stability, clay inhibition, lubricity, and high rate of penetration (ROP). The mud showed lower cost due to no issue caused during the drilling operation [5].
4. Biopolymers application in water-based muds
Water-based drilling fluids are an economical and eco-friendly alternative for successfully drilling a wellbore. Both conventional and high-performance muds generally use biopolymers to enhance rheological characteristics, provide acceptable viscosity, suspend solids, and control filtrate loss in the wellbore. A few examples are natural biomaterials derived from plants or microorganisms such as starch, guar, xanthan, and their chemically modified substitutes.
Biopolymers used for drilling fluids can be classified as plant-based or microbial-based, depending on their source. For instance, guar gum and locust bean gum are the most widely used plant-based materials. Guar gum is a nonionic linear polymer obtained from the seeds of the guar plant composed of the sugars galactose and mannose. On the other hand, locust bean gum is isolated from the fruit of the legume Ceratonia siliqua, and its structure is similar to guar except for the ratio of galactose to mannose, which influences its solubility in water. It has been observed that the galactose content directly relates to the water solubility. Thus the guar shows better solubility than locust bean gum.
Another kind of biopolymer that is mostly employed in water-based systems is bacterially produced polymers. Xanthan gum is a typical and mostly used additive of this type. It has a more branched structure than other gums and is very efficient, offering shear-thinning rheological behavior that is almost optimal for drilling fluid applications. Similarly, welan gum is a negatively charged (anionic) gum formed by bacteria belonging to the Alcaligenes genus fermenting sugar. It is observed that it exhibits better viscosity and salt resistance.
Various studies have highlighted the importance of biopolymers for the improvement of mud properties. For example, nitrocellulose-based muds were developed in a study, which showed enhanced rheological and filtration properties. It was used in high-performance, water-based fluids as a renewable, non-hazardous, and cost-effective alternative to synthetic polymers, with the added feature of maintaining and optimizing fluid characteristics [6]. Likewise, diutan gum was used as a drilling mud viscosifier, resulting in retaining their viscosities up to 232°C, when sodium erythorbate, potassium formate, and polyethylene glycol were added to the formulations [7].
5. Role of biopolymers in HPWBMs
Various additives are used in the mud with different dosages to enhance the viscosity of drilling mud. During drilling the pay zone section, the main concern is to reduce the invasion of filtrate and solids into the exposed formation. This invasion can cause irreversible problems that cause multiple folds decline in production. Thus, nondamaging mud containing biopolymer and other acid-soluble materials are added to the mud for drilling of such zones. Various biopolymers, including gums (xanthan, guar, and diutan), lignins, starches (both native and modified), cellulose, etc., are widely used in oil well drilling. These gums have been further modified to increase their thermal stability and salt resistance functionality. Figure 1 shows xanthan, diutan, and guar gum structure.
Figure 1.
Structure of (a) xanthan gum [8], (b) diutan gum [9], and (c) guar gum [10].
Due to the environmental concerns about the usage of huge quantities of chemicals and their disposal issues, the oil industry is looking for bio-based/biodegradable materials with very little or no impact on the environment. Therefore, various waste products and other biomaterials have been investigated to substitute the hazardous chemicals used in recent years. These materials include but are not limited to agarwood waste, rice husk, psyllium husk, and groundnut husk: dates, grass, wood, pistachio shell, mandarin peels, palm tree leaves, green olive pits, Cupressus cones powder, etc. The mentioned materials showed that the mud containing these agents could significantly improve the mud properties. Moreover, the overdependence on such expensive commercial materials is reduced by utilizing such additives. These materials are easily available everywhere, and their proper utilization can reduce the extra cost and ensure environmental cleanliness.
6. Role of nanomaterials in HPWBMs
Nanomaterials are synthesized substances with a size ranging from 1 to 100 nanometers (nm) and are therefore used in very small dimensions. These materials have numerous applications in various fields, including automotive, electronics, pharmaceuticals, etc. In recent years their applications were also observed in the petroleum industry in different areas. In drilling fluids, nanomaterials have been used for borehole stability, filtrate loss reduction, and enhancing the rheology of mud blends. Such materials are characterized by an extremely high surface area to volume ratio due to their nano-sized particles. Nanoparticles offer enormous characteristics to reduce frictional resistance between drilling pipes and side holes and optimize torque and drag due to their extraordinarily thin and fine structure. Furthermore, NPs have broad drilling capabilities in high pressure and high temperature (HPHT) environments due to their wider surface area [11, 12].
Numerous nanomaterials, including graphene oxide, graphene nanoplatelets, titanium oxide, aluminum oxide, cupric oxide, CNT, multi-walled carbon nanotube (MWCNT) nanosilica, clay, metals, and carbon-based NPs, have been used to enhance the performance of WBMs. It was observed that the mud containing nanoparticles possesses enhanced physical and chemical properties, which enhances its efficiency. Graphene nanoparticles were found to be an excellent binding agent because these can develop a compact, impermeable, and thinner mud cake. This allows nano-pores to be physically plugged, limiting filtrate losses. As a result, using the graphene family improves wellbore stability [13].
Additionally, nanoparticles have been introduced as lubricants to minimize friction between the wellbore and the drill string, lowering the risk of a stuck pipe. Figure 2 shows how nanoparticles have a higher surface area than macroparticles of the same volume.
Figure 2.
Comparison of nanoparticles surface area with bulk material.
In water-based mud systems, polymers nanoparticles such as TiO2/PAM nanocomposite depicted reduced filtrate loss volume and filter cake thickness while enhancing the formulated mud’s rheology [14]. Likewise, SiO2/acrylic nanocomposites showed improved thermal stability [15]. Numerous studies have concluded that the synthesized composites showed improvements in rheology and lubricity while a reduction was observed in the filtrate loss. Some of the common nanoparticles with potential applications in drilling fluids are summarized in Table 1.
In response to increasing environmental restrictions and economic concerns, there has been an upsurge in demand for water-based muds (WBMs) in the last 15 years, particularly for off-shore operations. Industry operators and service providers demanded Water-based muds to substitute the stable and inhibitive invert emulsion fluids. Some of the most common problems with WBM are hole washouts, poor hole cleaning, bit balling, tight holes, inappropriate reaming and stuck pipe, shakers screens blockage, reducing total solids control equipment (SCE) performance, logging difficulties, and running casing are all associated with the appropriate mud design [25].
Numerous fields have applied HPWBMs to overcome the encountered problems, including complex formation drilling, high-temperature drilling, borehole instability, and high collapse stress formations. In China, the complex formations containing mudstone, fine sandstone, mudstone intercalated with salt rock, and pure salt rock were successfully drilled using HPWBMs. The mud exhibited better clay inhibition, rheological and filtration characteristics, and rate of penetration and was environmentally safe [26].
A well having issues during drilling including borehole instability, risk of induced losses, and tight hole owing to the presence of unstable shale was successfully drilled using HPWBM. The well was drilled to total depth without any NPT attributable to drilling fluid or hole cleaning. A gauge hole was drilled with minor washouts. The cuttings were distinct, suggesting good inhibition. In comparison to the fluid applied in former wells, the proposed HPWBM system demonstrated its superiority and efficiency [3].
Similarly, in South China’s deepwater well drilling operation, a high-efficiency mud system was determined to be acceptable, and the well application revealed that the selected mud is an excellent alternative to OBM or SBM [5]. HPWBM has been successfully deployed in different fields in Dubai, which contain higher reactive clays and have reached higher degrees of inclination [25].
A new HPWBM was designed to fill the gap between conventional WBM and emulsion-based mud systems in terms of drilling performance. The mud has been tested in the field with some of the most challenging onshore, deepwater, and continental shelf wells. These wells would otherwise have been drilled with oil or synthetic-based mud [27].
Scleroglucan as a mud additive has also been used during drilling of gas field exploration in various fields. The field experiments confirmed its salt and thermal stability and found a stable additive up to 80°C.
8. Limitations of biopolymers
Generally, the biopolymers have lower thermal stability and degrade at higher temperatures. The salts, calcium, and bacterial resistance also negatively impact the performance of the mud containing biopolymers. Thus other additives such as bactericides are added to prevent the bacterial attack. Owing to the reduced thermal stability, either the native materials are modified by adding more functionalized groups into their main chain or the addition of two or more biopolymers is used. The former is economical compared to the second one. In a study, the synergic effect of xanthan and diutan gum enhanced the performance of water-based drilling fluids and showed shear-thinning behavior [28].
Different researchers have attempted to modify the biopolymers for drilling fluid applications. Starch is one of the most widely used additives, which improves both rheology and the filtration behavior of the muds. Starches have been modified using chemical, physical and enzymatic approaches. The usage of starch in the petroleum industry is in the drilling fluids, enhanced oil recovery, and completion fluids. A variety of starches are available, which are generally used for food applications. Pregelatinized starch (PGS) has been used in the oil industry due to its lower costs. Carboxymethyl starches (CMSs) are also very common, showing better thermal stability and salt resistance in WBMs. The combination of polyanionic cellulose (PAC) with the modified starch shows significant improvements in terms of mud rheology and filtration. Acetylated and grafted starches also showed promising results in WBMs.
Acknowledgments
The authors would like to thank the Ministry of Higher Education (MOHE), Malaysia, for providing financial assistance under FRGS/1/2020/TK0/UTP/02/3.
Conflict of interest
The authors have no conflict of interest.
Nomenclature
HPWBMs
high-performance water-based mud
PAC
polyanionic cellulose
OBM
oil-based mud
SCE
solids control equipment
SBM
synthetic based mud
HPHT
high-pressure high temperature
NPs
nanoparticles
CNT
carbon nanotubes
PGS
pregelatinized starch
CMS
carboxymethyl starch
MWCNT
multi-walled carbon nanotube
ROP
rate of penetration
\n',keywords:"drilling fluids, nondamaging muds, high-pressure, high temperature",chapterPDFUrl:"https://cdn.intechopen.com/pdfs/82413.pdf",chapterXML:"https://mts.intechopen.com/source/xml/82413.xml",downloadPdfUrl:"/chapter/pdf-download/82413",previewPdfUrl:"/chapter/pdf-preview/82413",totalDownloads:4,totalViews:0,totalCrossrefCites:0,dateSubmitted:"May 8th 2022",dateReviewed:"May 23rd 2022",datePrePublished:"June 28th 2022",datePublished:null,dateFinished:"June 27th 2022",readingETA:"0",abstract:"With the increase in energy demand, deeper wells drilling is one of the solutions to fulfill the energy demand, which demands specialized drilling mud formulation. These muds are composed of thermally stable materials that can sustain in high-temperature conditions. Biopolymers are widely used out of various mud additives for improving the rheology and filtration characteristics of mud. Owing to the high temperature and poor thermal stability of such additives, these additives lose their primary functions, resulting in the nonproductive time and irreversible problems. The book chapter highlights the uses of water-based mud, its limitations, and the degradation of biopolymers. Various additives’ significance and susceptibility in harsh borehole conditions have been discussed. The existing additives used for the rheological and filtration characteristics improvements and their shortcomings are presented. Furthermore, the field applications of native and modified polymeric-based mud formulations have been further examined and presented.",reviewType:"peer-reviewed",bibtexUrl:"/chapter/bibtex/82413",risUrl:"/chapter/ris/82413",signatures:"Imtiaz Ali, Maqsood Ahmad, Aftab Hussain Arain, Vahid Atashbari and Asif Zamir",book:{id:"11929",type:"book",title:"Drilling Engineering and Technology - Recent Advances, New Perspectives and Applications",subtitle:null,fullTitle:"Drilling Engineering and Technology - Recent Advances, New Perspectives and Applications",slug:null,publishedDate:null,bookSignature:"Dr. Mansoor Zoveidavianpoor",coverURL:"https://cdn.intechopen.com/books/images_new/11929.jpg",licenceType:"CC BY 3.0",editedByType:null,isbn:"978-1-80356-363-3",printIsbn:"978-1-80356-362-6",pdfIsbn:"978-1-80356-364-0",isAvailableForWebshopOrdering:!0,editors:[{id:"92105",title:"Dr.",name:"Mansoor",middleName:null,surname:"Zoveidavianpoor",slug:"mansoor-zoveidavianpoor",fullName:"Mansoor Zoveidavianpoor"}],productType:{id:"1",title:"Edited Volume",chapterContentType:"chapter",authoredCaption:"Edited by"}},authors:null,sections:[{id:"sec_1",title:"1. Introduction",level:"1"},{id:"sec_2",title:"2. Drilling mud properties",level:"1"},{id:"sec_3",title:"3. Mud properties modification",level:"1"},{id:"sec_4",title:"4. Biopolymers application in water-based muds",level:"1"},{id:"sec_5",title:"5. Role of biopolymers in HPWBMs",level:"1"},{id:"sec_6",title:"6. Role of nanomaterials in HPWBMs",level:"1"},{id:"sec_7",title:"7. Field applications of high-performance WBMs",level:"1"},{id:"sec_8",title:"8. Limitations of biopolymers",level:"1"},{id:"sec_9",title:"Acknowledgments",level:"1"},{id:"sec_12",title:"Conflict of interest",level:"1"},{id:"sec_11",title:"Nomenclature",level:"1"}],chapterReferences:[{id:"B1",body:'Li X, Jiang G, Shen X, Li G. Poly-l-arginine as a high-performance and biodegradable shale inhibitor in water-based drilling fluids for stabilizing wellbore. ACS Sustainable Chemistry & Engineering. 2020;8(4):1899-1907'},{id:"B2",body:'Huang X-B et al. 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International Journal of Biological Macromolecules. 2016;88:361-372'},{id:"B11",body:'Smith SR, Rafati R, Haddad AS, Cooper A, Hamidi H. Application of aluminium oxide nanoparticles to enhance rheological and filtration properties of water based muds at HPHT conditions. Colloids and Surfaces A: Physicochemical and Engineering Aspects. 2018;537:361-371'},{id:"B12",body:'Bera A, Belhaj H. Application of nanotechnology by means of nanoparticles and nanodispersions in oil recovery-A comprehensive review. Journal of Natural Gas Science and Engineering. 2016;34:1284-1309'},{id:"B13",body:'Ikram R, Mohamed Jan B, Sidek A, Kenanakis G. Utilization of eco-friendly waste generated nanomaterials in water-based drilling fluids: State of the art review. Materials. 2021;14(15):4171'},{id:"B14",body:'Sadeghalvaad M, Sabbaghi S. The effect of the TiO2/polyacrylamide nanocomposite on water-based drilling fluid properties. Powder Technology. 2015;272:113-119'},{id:"B15",body:'Huang X, Sun J, Lv K, Liu J, Shen H, Zhang F. Application of core-shell structural acrylic resin/nano-SiO2 composite in water based drilling fluid to plug shale pores. Journal of Natural Gas Science and Engineering. 2018;55:418-425'},{id:"B16",body:'William JKM, Ponmani S, Samuel R, Nagarajan R, Sangwai JS. Effect of CuO and ZnO nanofluids in xanthan gum on thermal, electrical and high pressure rheology of water-based drilling fluids. Journal of Petroleum Science and Engineering. 2014;117:15-27'},{id:"B17",body:'Cai J, Chenevert ME, Sharma MM, Friedheim J. Decreasing water invasion into Atoka shale using nonmodified silica nanoparticles. SPE Drilling & Completion. 2012;27(01):103-112'},{id:"B18",body:'Fakoya M, Shah S. Enhancement of filtration properties in surfactant-based and polymeric fluids by nanoparticles. In: SPE Eastern Regional Meeting. 2014'},{id:"B19",body:'Kosynkin DV et al. Graphene oxide as a high-performance fluid-loss-control additive in water-based drilling fluids. ACS Applied Materials & Interfaces. 2012;4(1):222-227'},{id:"B20",body:'Hoelscher KP, Young S, Friedheim J, De Stefano G. Nanotechnology application in drilling fluids. In: Offshore Mediterranean Conference and Exhibition. 2013'},{id:"B21",body:'Ito M et al. Nanocomposites for HPHT sealing system for harsh downhole environments. In: SPWLA 19th Formation Evaluation Symposium of Japan. 2013'},{id:"B22",body:'Mao H, Qiu Z, Shen Z, Huang W. Hydrophobic associated polymer based silica nanoparticles composite with core–shell structure as a filtrate reducer for drilling fluid at utra-high temperature. Journal of Petroleum Science and Engineering. 2015;129:1-14'},{id:"B23",body:'Zamir A, Siddiqui N. Investigating and enhancing mud cake reduction using smart nano clay based WBM. Journal of Petroleum Environment. 2017;8(315.10):4172'},{id:"B24",body:'Al-Malki N, Pourafshary P, Al-Hadrami H, Abdo J. Controlling bentonite-based drilling mud properties using sepiolite nanoparticles. Petroleum Exploration and Development. 2016;43(4):717-723'},{id:"B25",body:'Nasrallah M, Nour M, Savari S. Customized high-performance water-based mud delivers superior results while driving down cost by successfully drilling through the most troublesome shale formations in the United Arab Emirates. In: Presented at the International Petroleum Technology Conference. 2022'},{id:"B26",body:'Long L et al. Application of innovative high density high-performance water-based drilling fluid technology in the efficient development and production of ultra-deep complicated formations in the Tian Mountain Front Block in China. In: Presented at the Offshore Technology Conference Asia. 2018'},{id:"B27",body:'Dye W et al. New water-based mud balances high-performance drilling and environmental compliance. SPE Drilling & Completion. 2006;21(04):255-267. DOI: 10.2118/92367-PA'},{id:"B28",body:'Akpan EU, Enyi GC, Nasr GG. Enhancing the performance of xanthan gum in water-based mud systems using an environmentally friendly biopolymer. Journal of Petroleum Exploration and Production Technology. 2020;10(5):1933-1948'}],footnotes:[],contributors:[{corresp:"yes",contributorFullName:"Imtiaz Ali",address:"imtiaz_17003333@utp.edu.my",affiliation:'
Universiti Teknologi PETRONAS (UTP), Malaysia
Balochistan University of Information Technology, Engineering and Management Sciences (BUITEMS), Pakistan
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Today, the term “Systemic speech-and-language underdevelopment (SLU)” has firmly established in Russian science and practice, implying a complex developmental disorder of speech and language in children with a primary normal hearing and a conserved intellect, in which the main components of the language system are violated: vocabulary, grammar, phonetics, and, as a consequence, dialogic and monologic speech. Traditionally, a differentiated level-by-level analysis of the speech and language abilities of children is used. The variability of the manifestations and severity of speech-and-language disorders were initially systematized and characterized in four levels of underdevelopment: from the complete absence of phrase speech to the availability of simple and complex sentences with lexico-grammatical errors. Effective algorithms of speech therapist work with SLU are introduced. The effectiveness of the application of these models and algorithms on the material of various language groups is proved.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Tatiana Tumanova and Tatiana Filicheva",authors:[{id:"204529",title:"Dr.",name:"Tatiana Volodarovna",middleName:null,surname:"Tumanova",slug:"tatiana-volodarovna-tumanova",fullName:"Tatiana Volodarovna Tumanova"},{id:"208704",title:"Dr.",name:"Tatiana Borisovna",middleName:null,surname:"Filicheva",slug:"tatiana-borisovna-filicheva",fullName:"Tatiana Borisovna Filicheva"}]},{id:"56560",doi:"10.5772/intechopen.70235",title:"The Role of Speech and Language Therapist in Autism Spectrum Disorders Intervention – An Inclusive Approach",slug:"the-role-of-speech-and-language-therapist-in-autism-spectrum-disorders-intervention-an-inclusive-app",totalDownloads:2332,totalCrossrefCites:2,totalDimensionsCites:16,abstract:"The chapter describes the possibilities of involving a speech-language therapist in the assessment of the pragmatic level of communication in autism spectrum disorders (ASD), where one of the most frequently impaired areas is communication pragmatics. These difficulties lead to a disruption of social interaction, which might be one of the obstacles to speech-language intervention in these children. The text is based on an originally developed testing material aimed at selected pragmatic-oriented communication situations relating to everyday activities and real life. Based on a comparison of domestic and international resources in this area, as well as mediated and own empirical experience, our assessment approach is based on the conclusion that pragmatics can be understood in different contexts and perspectives. The text presents the results of a partial survey comparing the performance of children with ASD and children with typical development. The assessment focused on the children’s election of the correct picture of a pair of pictures that represent usual communication and social situations. The results of the research suggest fewer incorrect responses in children with ASD and in different areas compared with children with typical development. However, the results of a qualitative analysis indicate a necessity to expand the assessment of communication pragmatics by adding an individually specific qualitative analysis of children’s performance.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Kateřina Vitásková and Lucie Kytnarová",authors:[{id:"203061",title:"Associate Prof.",name:"Kateřina",middleName:null,surname:"Vitásková",slug:"katerina-vitaskova",fullName:"Kateřina Vitásková"},{id:"212035",title:"MSc.",name:"Lucie",middleName:null,surname:"Kytnarová",slug:"lucie-kytnarova",fullName:"Lucie Kytnarová"}]},{id:"56266",doi:"10.5772/intechopen.69894",title:"Discourse: Assessment and Therapy",slug:"discourse-assessment-and-therapy",totalDownloads:3105,totalCrossrefCites:7,totalDimensionsCites:9,abstract:"Discourse is essential for interaction and for the expression of ideas, feelings and opinions. Telling personal stories, such as talking about your day or recounting what happened in the playground, is essential for communication and establishing relationships. However, due to their language impairments, people with aphasia (PWA) and children with developmental language disorder (DLD) often have problems with everyday discourse which impact on their lives more widely. While improvement in language skills is supported by speech-language pathology (therapy), it tends to focus on smaller linguistic components, such as single words and sentences. This chapter outlines how speakers construct discourse in everyday situations and focuses on the meanings that people use discourse to convey, as well as the lexical and grammatical resources they use to convey these meanings. Current methods for discourse analysis will be outlined and key developments in narrative discourse production therapy will be reviewed.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Lucy T. Dipper and Madeleine Pritchard",authors:[{id:"201158",title:"Dr.",name:"Lucy",middleName:null,surname:"Dipper",slug:"lucy-dipper",fullName:"Lucy Dipper"},{id:"208542",title:"Dr.",name:"Madeleine",middleName:null,surname:"Pritchard",slug:"madeleine-pritchard",fullName:"Madeleine Pritchard"}]},{id:"70186",doi:"10.5772/intechopen.90173",title:"Computational Model for the Construction of Cognitive Maps",slug:"computational-model-for-the-construction-of-cognitive-maps",totalDownloads:767,totalCrossrefCites:5,totalDimensionsCites:7,abstract:"The chapter considers an option for solving the problem of storing data in the Web environment and providing an access to the data, taking into account their semantics, i.e., in accordance with the nature of the tasks solved by users of different classes. The proposed solution is based on the use of presentation of the data in the form of semantic networks. As the main technical tool for describing access methods, the chapter proposes cognitive maps (CMs), which can also be considered as semantic networks of special type. When access is done, the presentation of information consistent with the semantic description of the user is provided. The suggested method of constructing CMs is based on the intensional logic. The solution is presented in the form of a computational model, which provides for the construction of CM’s dependence on the parameter. The proposed method of parametrization makes it possible to take into account the semantic characteristics of users of various classes. Some CM constructions for problem domain description are presented. A method for semantically oriented naming of CMs is proposed. The method is based on building of a functor of special type.",book:{id:"7311",slug:"cognitive-and-intermedial-semiotics",title:"Cognitive and Intermedial Semiotics",fullTitle:"Cognitive and Intermedial Semiotics"},signatures:"Larisa Yu. Ismailova, Sergey V. Kosikov and Viacheslav E. Wolfengagen",authors:[{id:"299703",title:"Dr.",name:"Larisa",middleName:"Yusifovna",surname:"Ismailova",slug:"larisa-ismailova",fullName:"Larisa Ismailova"},{id:"299704",title:"Prof.",name:"Viacheslav",middleName:null,surname:"Wolfengagen",slug:"viacheslav-wolfengagen",fullName:"Viacheslav Wolfengagen"},{id:"299711",title:"Mr.",name:"Sergey V.",middleName:null,surname:"Kosikov",slug:"sergey-v.-kosikov",fullName:"Sergey V. Kosikov"}]},{id:"56698",doi:"10.5772/intechopen.70107",title:"Risk Factors for Speech-Language Pathologies in Children",slug:"risk-factors-for-speech-language-pathologies-in-children",totalDownloads:1604,totalCrossrefCites:2,totalDimensionsCites:5,abstract:"Risk factors are understood to encompass “aspects of individual behavior or lifestyle, environmental exposure, hereditary or congenital characteristics that are associated with a health related condition”. These are conditions that increase the chances of the child presenting speech-language disorders and that can be avoided, controlled, or treated. Risk is defined as the chance of a child exposed to certain factors (environmental or biological) to acquire or develop speech-language disorders. The objectives of the present study were: to identify the risk factors for speech-language disorders in children up to five years of age and to verify the relationship between risk factors and speech-language diagnostic hypotheses. The aspects of being male gender, prematurity, shyness, being an only child or youngest child, presenting deleterious oral habits, having a family history of speech-language disorders, and use of licit or illicit drugs during pregnancy seem to be the factors that should draw the attention of the health professionals in child development. Therefore, the monitoring of children who have these risk factors should be performed in order to promote the necessary stimulation and the construction of healthy environments.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Daniela Regina Molini-Avejonas, Laís Vignati Ferreira and Cibelle\nAlbuquerque de La Higuera Amato",authors:[{id:"38599",title:"Prof.",name:"Daniela",middleName:null,surname:"Molini-Avejonas",slug:"daniela-molini-avejonas",fullName:"Daniela Molini-Avejonas"},{id:"204612",title:"Prof.",name:"Cibelle",middleName:null,surname:"Amato",slug:"cibelle-amato",fullName:"Cibelle Amato"},{id:"210543",title:"Ms.",name:"Laís",middleName:null,surname:"Ferreira",slug:"lais-ferreira",fullName:"Laís Ferreira"}]}],mostDownloadedChaptersLast30Days:[{id:"56698",title:"Risk Factors for Speech-Language Pathologies in Children",slug:"risk-factors-for-speech-language-pathologies-in-children",totalDownloads:1604,totalCrossrefCites:2,totalDimensionsCites:5,abstract:"Risk factors are understood to encompass “aspects of individual behavior or lifestyle, environmental exposure, hereditary or congenital characteristics that are associated with a health related condition”. These are conditions that increase the chances of the child presenting speech-language disorders and that can be avoided, controlled, or treated. Risk is defined as the chance of a child exposed to certain factors (environmental or biological) to acquire or develop speech-language disorders. The objectives of the present study were: to identify the risk factors for speech-language disorders in children up to five years of age and to verify the relationship between risk factors and speech-language diagnostic hypotheses. The aspects of being male gender, prematurity, shyness, being an only child or youngest child, presenting deleterious oral habits, having a family history of speech-language disorders, and use of licit or illicit drugs during pregnancy seem to be the factors that should draw the attention of the health professionals in child development. Therefore, the monitoring of children who have these risk factors should be performed in order to promote the necessary stimulation and the construction of healthy environments.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Daniela Regina Molini-Avejonas, Laís Vignati Ferreira and Cibelle\nAlbuquerque de La Higuera Amato",authors:[{id:"38599",title:"Prof.",name:"Daniela",middleName:null,surname:"Molini-Avejonas",slug:"daniela-molini-avejonas",fullName:"Daniela Molini-Avejonas"},{id:"204612",title:"Prof.",name:"Cibelle",middleName:null,surname:"Amato",slug:"cibelle-amato",fullName:"Cibelle Amato"},{id:"210543",title:"Ms.",name:"Laís",middleName:null,surname:"Ferreira",slug:"lais-ferreira",fullName:"Laís Ferreira"}]},{id:"56385",title:"Formulaic Language: The Building Block of Aphasic Speech",slug:"formulaic-language-the-building-block-of-aphasic-speech",totalDownloads:1865,totalCrossrefCites:0,totalDimensionsCites:0,abstract:"Aphasia is a condition that may appear when parts of the brain (Broca’s or Wernicke’s area) responsible for language production and processing are damaged. In most cases, patients have the left side of their brain affected. Thus, formulaic language remains intact in most cases. During speech therapy, this can be a solid base to build on. Formulaic language consists of formulas that are fixed phrases, stereotypes that behave as a single-unit lexical item. They have a significant role in language acquisition and fluent discourse production. These ready-made parts of speech are stored in the long-term memory. Studies suggest that the processing of formulaic language engages right hemisphere areas of the brain. Due to their language impairment, people with aphasia often have a lower quality of life, consequently social and professional integration for them being problematic. The investigation of preserved patterns, such as formulaic language and impairments related to different aspects of discourse, may provide insights both for clinical practice and for cognitive science, therefore, facilitating a more efficient approach to treatment.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Annamária Győrfi",authors:[{id:"200880",title:"Dr.",name:"Annamaria",middleName:null,surname:"Gyorfi",slug:"annamaria-gyorfi",fullName:"Annamaria Gyorfi"}]},{id:"72178",title:"Cognitive Semiotics and Conceptual Blend: A Case Study from The Crying of Lot 49",slug:"cognitive-semiotics-and-conceptual-blend-a-case-study-from-em-the-crying-of-lot-49-em-",totalDownloads:716,totalCrossrefCites:0,totalDimensionsCites:0,abstract:"Cognitive semiotics has been defined by the linguist Jordan Zlatev as “the need to unify or at least to ‘defragment’ our world-views, the need to come to terms with increasingly higher levels of dynamism and complexity”. If we consider, as it is clear from the second cognitive revolution, when embodiment claimed its leading role, that meaning emerges from the constant interaction of body-brain-environment, we need to redefine the field that asks “what is meaning and how does it emerge.” New theories about metaphors as neural nodes and image schemas would shed light over the emergence of meaning in human communication, and, to do so, the study of conceptual blends as essential cognitive tools and as an integrative theory should be put in the center of the debate. In words of Brandt and Brandt, “blends occur as signs and are therefore a natural subject of cognitive semiotics”. Here, we will represent the emergence of meaning in a blend from the highly dynamic and complex narrative The Crying of Lot 49 by Pynchon and propose a conceptual story (or mental space sequence of the story) of the mentioned blend.",book:{id:"7311",slug:"cognitive-and-intermedial-semiotics",title:"Cognitive and Intermedial Semiotics",fullTitle:"Cognitive and Intermedial Semiotics"},signatures:"Marta Silvera-Roig",authors:[{id:"302728",title:"Dr.",name:"Marta",middleName:null,surname:"Silvera-Roig",slug:"marta-silvera-roig",fullName:"Marta Silvera-Roig"}]},{id:"56266",title:"Discourse: Assessment and Therapy",slug:"discourse-assessment-and-therapy",totalDownloads:3106,totalCrossrefCites:7,totalDimensionsCites:9,abstract:"Discourse is essential for interaction and for the expression of ideas, feelings and opinions. Telling personal stories, such as talking about your day or recounting what happened in the playground, is essential for communication and establishing relationships. However, due to their language impairments, people with aphasia (PWA) and children with developmental language disorder (DLD) often have problems with everyday discourse which impact on their lives more widely. While improvement in language skills is supported by speech-language pathology (therapy), it tends to focus on smaller linguistic components, such as single words and sentences. This chapter outlines how speakers construct discourse in everyday situations and focuses on the meanings that people use discourse to convey, as well as the lexical and grammatical resources they use to convey these meanings. Current methods for discourse analysis will be outlined and key developments in narrative discourse production therapy will be reviewed.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Lucy T. Dipper and Madeleine Pritchard",authors:[{id:"201158",title:"Dr.",name:"Lucy",middleName:null,surname:"Dipper",slug:"lucy-dipper",fullName:"Lucy Dipper"},{id:"208542",title:"Dr.",name:"Madeleine",middleName:null,surname:"Pritchard",slug:"madeleine-pritchard",fullName:"Madeleine Pritchard"}]},{id:"56414",title:"Evidence for Speech Sound Disorder (SSD) Assessment",slug:"evidence-for-speech-sound-disorder-ssd-assessment",totalDownloads:1635,totalCrossrefCites:0,totalDimensionsCites:1,abstract:"Comprehensive studies on aspects related to the assessment of different biomedical parameters (acoustic and laryngeal signs and oral airflow amplitude), as well as parameters for speech disorders, articulation rate, speech inconsistency, and speech stimulability, are essential for better professional practice and to understand misarticulations in children with speech sound disorders (SSDs). Different equipments that enable noninvasive collection and analysis of data have become more common in speech-language pathology practice. Studies recently conducted by our research group have emphasized the evaluation of auditory-perceptual processing by means of assessments of central auditory processing, electrophysiology of hearing—considering that pure-tone, speech audiometry, and tympanometry are routinely used with children during the diagnostic phase and motor speech production performed by acoustic analysis of speech, electroglottography, aerodynamic measures, and ultrasound tongue imaging. This chapter presents the recent advances observed in studies with Brazilian-Portuguese speakers aiming to improve the assessment of speech sound disorders and to understand better the relationship between the different processing mechanisms involved in speech.",book:{id:"5957",slug:"advances-in-speech-language-pathology",title:"Advances in Speech-language Pathology",fullTitle:"Advances in Speech-language Pathology"},signatures:"Haydée Fiszbein Wertzner, Danira T. Francisco, Tatiane F. Barrozo\nand Luciana O. Pagan-Neves",authors:[{id:"204570",title:"Prof.",name:"Haydée",middleName:null,surname:"Wertzner",slug:"haydee-wertzner",fullName:"Haydée Wertzner"},{id:"204572",title:"MSc.",name:"Danira",middleName:null,surname:"Francisco",slug:"danira-francisco",fullName:"Danira Francisco"},{id:"204573",title:"MSc.",name:"Tatiane",middleName:null,surname:"Barrozo",slug:"tatiane-barrozo",fullName:"Tatiane Barrozo"},{id:"204574",title:"Dr.",name:"Luciana",middleName:null,surname:"Pagan-Neves",slug:"luciana-pagan-neves",fullName:"Luciana Pagan-Neves"}]}],onlineFirstChaptersFilter:{topicId:"238",limit:6,offset:0},onlineFirstChaptersCollection:[],onlineFirstChaptersTotal:0},preDownload:{success:null,errors:{}},subscriptionForm:{success:null,errors:{}},aboutIntechopen:{},privacyPolicy:{},peerReviewing:{},howOpenAccessPublishingWithIntechopenWorks:{},sponsorshipBooks:{sponsorshipBooks:[],offset:8,limit:8,total:0},allSeries:{pteSeriesList:[{id:"14",title:"Artificial Intelligence",numberOfPublishedBooks:9,numberOfPublishedChapters:89,numberOfOpenTopics:6,numberOfUpcomingTopics:0,issn:"2633-1403",doi:"10.5772/intechopen.79920",isOpenForSubmission:!0},{id:"7",title:"Biomedical Engineering",numberOfPublishedBooks:12,numberOfPublishedChapters:104,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2631-5343",doi:"10.5772/intechopen.71985",isOpenForSubmission:!0}],lsSeriesList:[{id:"11",title:"Biochemistry",numberOfPublishedBooks:32,numberOfPublishedChapters:318,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2632-0983",doi:"10.5772/intechopen.72877",isOpenForSubmission:!0},{id:"25",title:"Environmental Sciences",numberOfPublishedBooks:1,numberOfPublishedChapters:12,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2754-6713",doi:"10.5772/intechopen.100362",isOpenForSubmission:!0},{id:"10",title:"Physiology",numberOfPublishedBooks:11,numberOfPublishedChapters:141,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2631-8261",doi:"10.5772/intechopen.72796",isOpenForSubmission:!0}],hsSeriesList:[{id:"3",title:"Dentistry",numberOfPublishedBooks:8,numberOfPublishedChapters:129,numberOfOpenTopics:2,numberOfUpcomingTopics:0,issn:"2631-6218",doi:"10.5772/intechopen.71199",isOpenForSubmission:!0},{id:"6",title:"Infectious Diseases",numberOfPublishedBooks:13,numberOfPublishedChapters:113,numberOfOpenTopics:3,numberOfUpcomingTopics:1,issn:"2631-6188",doi:"10.5772/intechopen.71852",isOpenForSubmission:!0},{id:"13",title:"Veterinary Medicine and Science",numberOfPublishedBooks:11,numberOfPublishedChapters:106,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2632-0517",doi:"10.5772/intechopen.73681",isOpenForSubmission:!0}],sshSeriesList:[{id:"22",title:"Business, Management and Economics",numberOfPublishedBooks:1,numberOfPublishedChapters:19,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2753-894X",doi:"10.5772/intechopen.100359",isOpenForSubmission:!0},{id:"23",title:"Education and Human Development",numberOfPublishedBooks:0,numberOfPublishedChapters:5,numberOfOpenTopics:1,numberOfUpcomingTopics:1,issn:null,doi:"10.5772/intechopen.100360",isOpenForSubmission:!0},{id:"24",title:"Sustainable Development",numberOfPublishedBooks:0,numberOfPublishedChapters:15,numberOfOpenTopics:5,numberOfUpcomingTopics:0,issn:null,doi:"10.5772/intechopen.100361",isOpenForSubmission:!0}],testimonialsList:[{id:"6",text:"It is great to work with the IntechOpen to produce a worthwhile collection of research that also becomes a great educational resource and guide for future research endeavors.",author:{id:"259298",name:"Edward",surname:"Narayan",institutionString:null,profilePictureURL:"https://mts.intechopen.com/storage/users/259298/images/system/259298.jpeg",slug:"edward-narayan",institution:{id:"3",name:"University of Queensland",country:{id:null,name:"Australia"}}}},{id:"13",text:"The collaboration with and support of the technical staff of IntechOpen is fantastic. The whole process of submitting an article and editing of the submitted article goes extremely smooth and fast, the number of reads and downloads of chapters is high, and the contributions are also frequently cited.",author:{id:"55578",name:"Antonio",surname:"Jurado-Navas",institutionString:null,profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bRisIQAS/Profile_Picture_1626166543950",slug:"antonio-jurado-navas",institution:{id:"720",name:"University of Malaga",country:{id:null,name:"Spain"}}}}]},series:{item:{id:"11",title:"Biochemistry",doi:"10.5772/intechopen.72877",issn:"2632-0983",scope:"Biochemistry, the study of chemical transformations occurring within living organisms, impacts all areas of life sciences, from molecular crystallography and genetics to ecology, medicine, and population biology. Biochemistry examines macromolecules - proteins, nucleic acids, carbohydrates, and lipids – and their building blocks, structures, functions, and interactions. Much of biochemistry is devoted to enzymes, proteins that catalyze chemical reactions, enzyme structures, mechanisms of action and their roles within cells. Biochemistry also studies small signaling molecules, coenzymes, inhibitors, vitamins, and hormones, which play roles in life processes. Biochemical experimentation, besides coopting classical chemistry methods, e.g., chromatography, adopted new techniques, e.g., X-ray diffraction, electron microscopy, NMR, radioisotopes, and developed sophisticated microbial genetic tools, e.g., auxotroph mutants and their revertants, fermentation, etc. More recently, biochemistry embraced the ‘big data’ omics systems. Initial biochemical studies have been exclusively analytic: dissecting, purifying, and examining individual components of a biological system; in the apt words of Efraim Racker (1913 –1991), “Don’t waste clean thinking on dirty enzymes.” Today, however, biochemistry is becoming more agglomerative and comprehensive, setting out to integrate and describe entirely particular biological systems. The ‘big data’ metabolomics can define the complement of small molecules, e.g., in a soil or biofilm sample; proteomics can distinguish all the comprising proteins, e.g., serum; metagenomics can identify all the genes in a complex environment, e.g., the bovine rumen. This Biochemistry Series will address the current research on biomolecules and the emerging trends with great promise.",coverUrl:"https://cdn.intechopen.com/series/covers/11.jpg",latestPublicationDate:"June 29th, 2022",hasOnlineFirst:!0,numberOfPublishedBooks:32,editor:{id:"31610",title:"Dr.",name:"Miroslav",middleName:null,surname:"Blumenberg",slug:"miroslav-blumenberg",fullName:"Miroslav Blumenberg",profilePictureURL:"https://mts.intechopen.com/storage/users/31610/images/system/31610.jpg",biography:"Miroslav Blumenberg, Ph.D., was born in Subotica and received his BSc in Belgrade, Yugoslavia. He completed his Ph.D. at MIT in Organic Chemistry; he followed up his Ph.D. with two postdoctoral study periods at Stanford University. Since 1983, he has been a faculty member of the RO Perelman Department of Dermatology, NYU School of Medicine, where he is codirector of a training grant in cutaneous biology. Dr. Blumenberg’s research is focused on the epidermis, expression of keratin genes, transcription profiling, keratinocyte differentiation, inflammatory diseases and cancers, and most recently the effects of the microbiome on the skin. He has published more than 100 peer-reviewed research articles and graduated numerous Ph.D. and postdoctoral students.",institutionString:null,institution:{name:"New York University Langone Medical Center",institutionURL:null,country:{name:"United States of America"}}},editorTwo:null,editorThree:null},subseries:{paginationCount:4,paginationItems:[{id:"14",title:"Cell and Molecular Biology",coverUrl:"https://cdn.intechopen.com/series_topics/covers/14.jpg",isOpenForSubmission:!0,editor:{id:"165627",title:"Dr.",name:"Rosa María",middleName:null,surname:"Martínez-Espinosa",slug:"rosa-maria-martinez-espinosa",fullName:"Rosa María Martínez-Espinosa",profilePictureURL:"https://mts.intechopen.com/storage/users/165627/images/system/165627.jpeg",biography:"Dr. Rosa María Martínez-Espinosa has been a Spanish Full Professor since 2020 (Biochemistry and Molecular Biology) and is currently Vice-President of International Relations and Cooperation development and leader of the research group 'Applied Biochemistry” (University of Alicante, Spain). Other positions she has held at the university include Vice-Dean of Master Programs, Vice-Dean of the Degree in Biology and Vice-Dean for Mobility and Enterprise and Engagement at the Faculty of Science (University of Alicante). She received her Bachelor in Biology in 1998 (University of Alicante) and her PhD in 2003 (Biochemistry, University of Alicante). She undertook post-doctoral research at the University of East Anglia (Norwich, U.K. 2004-2005; 2007-2008).\nHer multidisciplinary research focuses on investigating archaea and their potential applications in biotechnology. She has an H-index of 21. She has authored one patent and has published more than 70 indexed papers and around 60 book chapters.\nShe has contributed to more than 150 national and international meetings during the last 15 years. Her research interests include archaea metabolism, enzymes purification and characterization, gene regulation, carotenoids and bioplastics production, antioxidant\ncompounds, waste water treatments, and brines bioremediation.\nRosa María’s other roles include editorial board member for several journals related\nto biochemistry, reviewer for more than 60 journals (biochemistry, molecular biology, biotechnology, chemistry and microbiology) and president of several organizing committees in international meetings related to the N-cycle or respiratory processes.",institutionString:null,institution:{name:"University of Alicante",institutionURL:null,country:{name:"Spain"}}},editorTwo:null,editorThree:null},{id:"15",title:"Chemical Biology",coverUrl:"https://cdn.intechopen.com/series_topics/covers/15.jpg",isOpenForSubmission:!0,editor:{id:"441442",title:"Dr.",name:"Şükrü",middleName:null,surname:"Beydemir",slug:"sukru-beydemir",fullName:"Şükrü Beydemir",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0033Y00003GsUoIQAV/Profile_Picture_1634557147521",biography:"Dr. Şükrü Beydemir obtained a BSc in Chemistry in 1995 from Yüzüncü Yıl University, MSc in Biochemistry in 1998, and PhD in Biochemistry in 2002 from Atatürk University, Turkey. He performed post-doctoral studies at Max-Planck Institute, Germany, and University of Florence, Italy in addition to making several scientific visits abroad. He currently works as a Full Professor of Biochemistry in the Faculty of Pharmacy, Anadolu University, Turkey. Dr. Beydemir has published over a hundred scientific papers spanning protein biochemistry, enzymology and medicinal chemistry, reviews, book chapters and presented several conferences to scientists worldwide. He has received numerous publication awards from various international scientific councils. He serves in the Editorial Board of several international journals. Dr. Beydemir is also Rector of Bilecik Şeyh Edebali University, Turkey.",institutionString:null,institution:{name:"Anadolu University",institutionURL:null,country:{name:"Turkey"}}},editorTwo:{id:"13652",title:"Prof.",name:"Deniz",middleName:null,surname:"Ekinci",slug:"deniz-ekinci",fullName:"Deniz Ekinci",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002aYLT1QAO/Profile_Picture_1634557223079",biography:"Dr. Deniz Ekinci obtained a BSc in Chemistry in 2004, MSc in Biochemistry in 2006, and PhD in Biochemistry in 2009 from Atatürk University, Turkey. He studied at Stetson University, USA, in 2007-2008 and at the Max Planck Institute of Molecular Cell Biology and Genetics, Germany, in 2009-2010. Dr. Ekinci currently works as a Full Professor of Biochemistry in the Faculty of Agriculture and is the Head of the Enzyme and Microbial Biotechnology Division, Ondokuz Mayıs University, Turkey. He is a member of the Turkish Biochemical Society, American Chemical Society, and German Genetics society. Dr. Ekinci published around ninety scientific papers, reviews and book chapters, and presented several conferences to scientists. He has received numerous publication awards from several scientific councils. Dr. Ekinci serves as the Editor in Chief of four international books and is involved in the Editorial Board of several international journals.",institutionString:null,institution:{name:"Ondokuz Mayıs University",institutionURL:null,country:{name:"Turkey"}}},editorThree:null},{id:"17",title:"Metabolism",coverUrl:"https://cdn.intechopen.com/series_topics/covers/17.jpg",isOpenForSubmission:!0,editor:{id:"138626",title:"Dr.",name:"Yannis",middleName:null,surname:"Karamanos",slug:"yannis-karamanos",fullName:"Yannis Karamanos",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002g6Jv2QAE/Profile_Picture_1629356660984",biography:"Yannis Karamanos, born in Greece in 1953, completed his pre-graduate studies at the Université Pierre et Marie Curie, Paris, then his Masters and Doctoral degree at the Université de Lille (1983). He was associate professor at the University of Limoges (1987) before becoming full professor of biochemistry at the Université d’Artois (1996). He worked on the structure-function relationships of glycoconjugates and his main project was the investigations on the biological roles of the de-N-glycosylation enzymes (Endo-N-acetyl-β-D-glucosaminidase and peptide-N4-(N-acetyl-β-glucosaminyl) asparagine amidase). From 2002 he contributes to the understanding of the Blood-brain barrier functioning using proteomics approaches. He has published more than 70 papers. His teaching areas are energy metabolism and regulation, integration and organ specialization and metabolic adaptation.",institutionString:null,institution:{name:"Artois University",institutionURL:null,country:{name:"France"}}},editorTwo:null,editorThree:null},{id:"18",title:"Proteomics",coverUrl:"https://cdn.intechopen.com/series_topics/covers/18.jpg",isOpenForSubmission:!0,editor:{id:"200689",title:"Prof.",name:"Paolo",middleName:null,surname:"Iadarola",slug:"paolo-iadarola",fullName:"Paolo Iadarola",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bSCl8QAG/Profile_Picture_1623568118342",biography:"Paolo Iadarola graduated with a degree in Chemistry from the University of Pavia (Italy) in July 1972. He then worked as an Assistant Professor at the Faculty of Science of the same University until 1984. In 1985, Prof. Iadarola became Associate Professor at the Department of Biology and Biotechnologies of the University of Pavia and retired in October 2017. Since then, he has been working as an Adjunct Professor in the same Department at the University of Pavia. His research activity during the first years was primarily focused on the purification and structural characterization of enzymes from animal and plant sources. During this period, Prof. Iadarola familiarized himself with the conventional techniques used in column chromatography, spectrophotometry, manual Edman degradation, and electrophoresis). Since 1995, he has been working on: i) the determination in biological fluids (serum, urine, bronchoalveolar lavage, sputum) of proteolytic activities involved in the degradation processes of connective tissue matrix, and ii) on the identification of biological markers of lung diseases. In this context, he has developed and validated new methodologies (e.g., Capillary Electrophoresis coupled to Laser-Induced Fluorescence, CE-LIF) whose application enabled him to determine both the amounts of biochemical markers (Desmosines) in urine/serum of patients affected by Chronic Obstructive Pulmonary Disease (COPD) and the activity of proteolytic enzymes (Human Neutrophil Elastase, Cathepsin G, Pseudomonas aeruginosa elastase) in sputa of these patients. More recently, Prof. Iadarola was involved in developing techniques such as two-dimensional electrophoresis coupled to liquid chromatography/mass spectrometry (2DE-LC/MS) for the proteomic analysis of biological fluids aimed at the identification of potential biomarkers of different lung diseases. He is the author of about 150 publications (According to Scopus: H-Index: 23; Total citations: 1568- According to WOS: H-Index: 20; Total Citations: 1296) of peer-reviewed international journals. He is a Consultant Reviewer for several journals, including the Journal of Chromatography A, Journal of Chromatography B, Plos ONE, Proteomes, International Journal of Molecular Science, Biotech, Electrophoresis, and others. He is also Associate Editor of Biotech.",institutionString:null,institution:{name:"University of Pavia",institutionURL:null,country:{name:"Italy"}}},editorTwo:{id:"201414",title:"Dr.",name:"Simona",middleName:null,surname:"Viglio",slug:"simona-viglio",fullName:"Simona Viglio",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bRKDHQA4/Profile_Picture_1630402531487",biography:"Simona Viglio is an Associate Professor of Biochemistry at the Department of Molecular Medicine at the University of Pavia. She has been working since 1995 on the determination of proteolytic enzymes involved in the degradation process of connective tissue matrix and on the identification of biological markers of lung diseases. She gained considerable experience in developing and validating new methodologies whose applications allowed her to determine both the amount of biomarkers (Desmosine and Isodesmosine) in the urine of patients affected by COPD, and the activity of proteolytic enzymes (HNE, Cathepsin G, Pseudomonas aeruginosa elastase) in the sputa of these patients. Simona Viglio was also involved in research dealing with the supplementation of amino acids in patients with brain injury and chronic heart failure. She is presently engaged in the development of 2-DE and LC-MS techniques for the study of proteomics in biological fluids. The aim of this research is the identification of potential biomarkers of lung diseases. She is an author of about 90 publications (According to Scopus: H-Index: 23; According to WOS: H-Index: 20) on peer-reviewed journals, a member of the “Società Italiana di Biochimica e Biologia Molecolare,“ and a Consultant Reviewer for International Journal of Molecular Science, Journal of Chromatography A, COPD, Plos ONE and Nutritional Neuroscience.",institutionString:null,institution:{name:"University of Pavia",institutionURL:null,country:{name:"Italy"}}},editorThree:null}]},overviewPageOFChapters:{paginationCount:36,paginationItems:[{id:"82195",title:"Endoplasmic Reticulum: A Hub in Lipid Homeostasis",doi:"10.5772/intechopen.105450",signatures:"Raúl Ventura and María Isabel Hernández-Alvarez",slug:"endoplasmic-reticulum-a-hub-in-lipid-homeostasis",totalDownloads:4,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Updates on Endoplasmic Reticulum",coverURL:"https://cdn.intechopen.com/books/images_new/11674.jpg",subseries:{id:"14",title:"Cell and Molecular Biology"}}},{id:"82409",title:"Purinergic Signaling in Covid-19 Disease",doi:"10.5772/intechopen.105008",signatures:"Hailian Shen",slug:"purinergic-signaling-in-covid-19-disease",totalDownloads:5,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Purinergic System",coverURL:"https://cdn.intechopen.com/books/images_new/10801.jpg",subseries:{id:"17",title:"Metabolism"}}},{id:"82374",title:"The Potential of the Purinergic System as a Therapeutic Target of Natural Compounds in Cutaneous Melanoma",doi:"10.5772/intechopen.105457",signatures:"Gilnei Bruno da Silva, Daiane Manica, Marcelo Moreno and Margarete Dulce Bagatini",slug:"the-potential-of-the-purinergic-system-as-a-therapeutic-target-of-natural-compounds-in-cutaneous-mel",totalDownloads:10,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Purinergic System",coverURL:"https://cdn.intechopen.com/books/images_new/10801.jpg",subseries:{id:"17",title:"Metabolism"}}},{id:"82103",title:"The Role of Endoplasmic Reticulum Stress and Its Regulation in the Progression of Neurological and Infectious Diseases",doi:"10.5772/intechopen.105543",signatures:"Mary Dover, Michael Kishek, Miranda Eddins, Naneeta Desar, Ketema Paul and Milan Fiala",slug:"the-role-of-endoplasmic-reticulum-stress-and-its-regulation-in-the-progression-of-neurological-and-i",totalDownloads:6,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Updates on Endoplasmic Reticulum",coverURL:"https://cdn.intechopen.com/books/images_new/11674.jpg",subseries:{id:"14",title:"Cell and Molecular Biology"}}}]},overviewPagePublishedBooks:{paginationCount:32,paginationItems:[{type:"book",id:"7006",title:"Biochemistry and Health Benefits of Fatty Acids",subtitle:null,coverURL:"https://cdn.intechopen.com/books/images_new/7006.jpg",slug:"biochemistry-and-health-benefits-of-fatty-acids",publishedDate:"December 19th 2018",editedByType:"Edited by",bookSignature:"Viduranga Waisundara",hash:"c93a00abd68b5eba67e5e719f67fd20b",volumeInSeries:1,fullTitle:"Biochemistry and Health Benefits of Fatty Acids",editors:[{id:"194281",title:"Dr.",name:"Viduranga Y.",middleName:null,surname:"Waisundara",slug:"viduranga-y.-waisundara",fullName:"Viduranga Y. Waisundara",profilePictureURL:"https://mts.intechopen.com/storage/users/194281/images/system/194281.jpg",biography:"Dr. Viduranga Waisundara obtained her Ph.D. in Food Science\nand Technology from the Department of Chemistry, National\nUniversity of Singapore, in 2010. She was a lecturer at Temasek Polytechnic, Singapore from July 2009 to March 2013.\nShe relocated to her motherland of Sri Lanka and spearheaded the Functional Food Product Development Project at the\nNational Institute of Fundamental Studies from April 2013 to\nOctober 2016. She was a senior lecturer on a temporary basis at the Department of\nFood Technology, Faculty of Technology, Rajarata University of Sri Lanka. She is\ncurrently Deputy Principal of the Australian College of Business and Technology –\nKandy Campus, Sri Lanka. 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Behind these definitions are hidden all the aspects of normal and pathological functioning of all processes that the topic ‘Metabolism’ will cover within the Biochemistry Series. 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Thus proteomics, an area of research that detects all protein forms expressed in an organism, including splice isoforms and post-translational modifications, is more suitable than genomics for a comprehensive understanding of the biochemical processes that govern life. The most common proteomics applications are currently in the clinical field for the identification, in a variety of biological matrices, of biomarkers for diagnosis and therapeutic intervention of disorders. From the comparison of proteomic profiles of control and disease or different physiological states, which may emerge, changes in protein expression can provide new insights into the roles played by some proteins in human pathologies. Understanding how proteins function and interact with each other is another goal of proteomics that makes this approach even more intriguing. Specialized technology and expertise are required to assess the proteome of any biological sample. Currently, proteomics relies mainly on mass spectrometry (MS) combined with electrophoretic (1 or 2-DE-MS) and/or chromatographic techniques (LC-MS/MS). MS is an excellent tool that has gained popularity in proteomics because of its ability to gather a complex body of information such as cataloging protein expression, identifying protein modification sites, and defining protein interactions. 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