Summary of health, medical and laboratory data collected from pregnant women in the cohort.
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More than half of the publishers listed alongside IntechOpen (18 out of 30) are Social Science and Humanities publishers. IntechOpen is an exception to this as a leader in not only Open Access content but Open Access content across all scientific disciplines, including Physical Sciences, Engineering and Technology, Health Sciences, Life Science, and Social Sciences and Humanities.
\\n\\nOur breakdown of titles published demonstrates this with 47% PET, 31% HS, 18% LS, and 4% SSH books published.
\\n\\n“Even though ItechOpen has shown the potential of sci-tech books using an OA approach,” other publishers “have shown little interest in OA books.”
\\n\\nAdditionally, each book published by IntechOpen contains original content and research findings.
\\n\\nWe are honored to be among such prestigious publishers and we hope to continue to spearhead that growth in our quest to promote Open Access as a true pioneer in OA book publishing.
\\n\\n\\n\\n
\\n"}]',published:!0,mainMedia:null},components:[{type:"htmlEditorComponent",content:'
Simba Information has released its Open Access Book Publishing 2020 - 2024 report and has again identified IntechOpen as the world’s largest Open Access book publisher by title count.
\n\nSimba Information is a leading provider for market intelligence and forecasts in the media and publishing industry. The report, published every year, provides an overview and financial outlook for the global professional e-book publishing market.
\n\nIntechOpen, De Gruyter, and Frontiers are the largest OA book publishers by title count, with IntechOpen coming in at first place with 5,101 OA books published, a good 1,782 titles ahead of the nearest competitor.
\n\nSince the first Open Access Book Publishing report published in 2016, IntechOpen has held the top stop each year.
\n\n\n\nMore than half of the publishers listed alongside IntechOpen (18 out of 30) are Social Science and Humanities publishers. IntechOpen is an exception to this as a leader in not only Open Access content but Open Access content across all scientific disciplines, including Physical Sciences, Engineering and Technology, Health Sciences, Life Science, and Social Sciences and Humanities.
\n\nOur breakdown of titles published demonstrates this with 47% PET, 31% HS, 18% LS, and 4% SSH books published.
\n\n“Even though ItechOpen has shown the potential of sci-tech books using an OA approach,” other publishers “have shown little interest in OA books.”
\n\nAdditionally, each book published by IntechOpen contains original content and research findings.
\n\nWe are honored to be among such prestigious publishers and we hope to continue to spearhead that growth in our quest to promote Open Access as a true pioneer in OA book publishing.
\n\n\n\n
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The genus Coffea belongs to the Rubiaceae family and has over 100 species [1]. However, only Coffea arabica and Coffea canephora species are commercial, the former accounting for almost 75% of world coffee production and the latter for the remaining 25%. Brazil is the world’s largest producer and exporter of coffee accounting for about 70% of world exports [2]. C. arabica has this hegemony for producing pleasant and stimulating drink that is consumed worldwide while C. canephora coffee is less palatable and is intended primarily for the instant coffee industry.
Coffea breeding aims to combine genotypes of C. arabica and C. canephora species to release genetically stable varieties with strong traits of both species [3, 4]. In conventional Coffea breeding it takes six to eight selection cycles to generate a new cultivar, which is about 40 years. Each cycle corresponds to five years. But it takes four to five harvests to consistently evaluate a generation [5]. In addition, it is important that evaluations are performed on plants over five years of age to obtain reliable yield data [6]. In the breeding program, during the selection phase intermediate populations of progenies are generated and each one of them has different genetic pattern. Thus each progeny corresponds to a single plant.
In the selection phase, the progenies have the characteristic of heterosis that favors the occurrence of differentiated plants. Some of these plants may have special characteristics such as tolerance to biotic and abiotic factors or high productivity or excellent drink quality or all of these. To confirm if a progeny is special it must be multiplied and evaluated in relation to its agronomic performance in the field. Following this phase, the progeny may be released as a clonal cultivar. Cloning selected materials allows to capture all selection and improvement gains without involving genetic segregation [7].
The multiplication of intermediate genotypes to breeding program is not indicated by seeds because plants resulting from the germination may have genetic segregation that leads to loss of the special features [8]. Thus, it is recommended that these genotypes be vegetatively multiplied to maintain their genetic pattern. The vegetative multiplication of coffee plants has been obtained by cutting, and the species C. canephora responds very well to this process [9] while arabica plants are less efficient by this way, having low multiplication rate [10].
Usually C. arabica genotypes are vegetatively multiplied by in vitro cultivation. In vitro culture or plant tissue culture belongs to Plant Biotechnology which comprises culturing cells, tissues or organs under aseptic conditions and using artificial culture media containing different components such as water, minerals, vitamins, carbon source and plant growth regulators [11]. Plant tissue culture involves micropropagation processes such as somatic embryogenesis.
Somatic embryogenesis is defined as a process in which a zygotic embryo-like bipolar structure develops from a nonzygotic cell with no vascular connection to the original tissue [8, 11, 12, 13, 14]. This process is based on the concept of cellular totipotency, where all the somatic cells of plant tissue contain the genetic information necessary to produce a complete and functional plant (Haberlandt 1902 apud [15, 16, 17]). In somatic embryogenesis there is no gamete fusion, only somatic cells of explant tissue that will be responsible for the formation of somatic embryos. These embryos undergo the same developmental stages as the zygotic embryo (Figure 1) that will develop into a plant with a genetic pattern identical to the explant donor plant [18].
Schematic representation of the comparison of somatic and zygotic embryogenesis from Ref. [18].
The occurrence of somatic embryogenesis is associated with the induction of differentiated explant tissue cells that acquire the embryogenic characteristic, followed by the expression of the somatic embryo [19, 20, 21, 22]. Thus, this process consists in the termination of the gene expression model present in the explant differentiated tissue cells that will be replaced by the expression of embryogenic genes [23, 24]. But embryogenic program does not occur in all cells at the same time, only in some of them [14, 17, 25, 26]. Several changes may occur to reprogram a somatic cell to the competent embryogenic stage.
Embryogenic cells have different characteristics, they are unique, small, superficially they are similar to meristematic cells, with isodiametric forms, small vacuoles, stained nuclei, with abundance of organelles, thick cell wall and starch accumulation [22, 26, 27, 28]. The formation of somatic embryos is strongly associated with the embryogenic competence of the explant cells. Possibly, the acquisition of embryogenic competence is related to the endogenous level of plant hormones, which favor tissue sensitivity to plant growth regulators present in the culture medium, which modulates events leading to the formation of the somatic embryo [21, 28, 29].
Somatic embryogenesis can be applied to most plant species [30], but adequate conditions must be available for this, such as explant type, culture medium and growing environment condition [28].
Somatic embryogenesis is applied to C. arabica and C. canephora species for the purpose of vegetative multiplication of elite cultivars, large-scale clonal cultivar, Arabica F1 hybrid [4], to obtain transgenic plants and also as plant differentiation study model [31]. In addition, cloning allows the in vitro stock of germplasm cultivars for exchange between research institutions and the preservation of materials since seeds of this species have some degree of recalcitrance [32, 33].
In C. arabica the formation of somatic embryos can be obtained either by indirect [34], direct [35] or both somatic embryogenesis (Figure 2). Indirect somatic embryogenesis occurs in two phases, callogenesis followed by embryogenesis. On the other hand, direct somatic embryogenesis occurs in one phase without callogenesis. Comparison between these two forms of embryogenesis shows that the direct pathway is more advantageous than the indirect pathway. The direct pathway that occurs in a single phase ends up reducing inputs, labor and cultivation time while the indirect pathway occurs in two phases with higher costs of producing somatic embryos [6, 36, 37]. But although the direct pathway is more advantageous, most studies show that vegetative multiplication of C. arabica genotypes is mainly achieved by indirect somatic embryogenesis [6]. In the indirect pathway, explants of this species produce embryos more easily and in high quantity while in the direct pathway the number of formed embryos is smaller and this process occurs in a long time. Studies have indicated that the difficulty of direct pathway occurrence in C. arabica genotypes seems to be related to the presence of substances produced by the explant tissue itself [38]. This was demonstrated in explants of C. canephora and Daucos carota that showed inhibition of direct route when they were cultivated in culture medium with addition of substances secreted by explants of C. arabica. This result is possibly related to the difficulty of direct pathway occurrence in C. arabica genotypes.
Details of the occurrence of indirect and direct somatic embryogenesis in Coffea.
Coffee regeneration via somatic embryogenesis can be obtained from different types of explants (Figure 3), such as anthers [39, 40], leaves [34, 41, 42, 43, 44, 45, 46] and roots [47, 48]. However, leaf explant is the most used type for the application of direct or indirect somatic embryogenesis in C. arabica genotypes, this has been occurring since the pioneering work of Sondhal and Sharp [34]. Normally, these explants are used in rectangular shape with dimensions close to 1.5 × 2 cm2.
Types of explants used for the application of indirect and direct somatic embryogenesis in Coffea genotypes.
There are indications that Coffea somatic embryogenesis is more efficient if applied to leaf explants from in vitro seedlings than from leaves collected from plants in the natural environment [49, 50, 51], and this response must be related to vegetable hormones endogenous. This aspect may also be related to morphology since in vitro seedling leaves have a thicker cuticular layer than those from environmental plants. This characteristic tends to favor greater absorption of culture media components leading to the efficiency of somatic embryogenesis response [51, 52]. In addition, Coffea leaf explants from environmental plants can become curled which impairs nutrient absorption from the culture medium.
C. arabica explants remain green until about 60 days after inoculation in the culture medium and after this period they oxidize. This response is verified in explants submitted to direct or indirect route [45, 46]. In general, oxidized explants also have the ability to form calluses or embryos although they appear to be senescent.
In the indirect pathway, somatic embryos of C. arabica are formed after about 210 days of explant inoculation in the culture medium [45] while in the direct pathway they can be observed after about 90 days, but in small numbers [46]. On the other hand, there are also genotypes that do not form somatic embryos when submitted to these two embryogenesis pathways and are called recalcitrant [53]. Leaf explants of C. arabica cultivar Mundo Novo form somatic embryos in both pathways [45, 46]. But the same genotype may have different capacity for somatic embryogenesis in each of these pathways. Explants of cultivar Mundo Novo and decaffeinated genotypes AC1, AC2 and AC3 formed a greater number of somatic embryos via the indirect route than by the direct one [54].
In Coffea, indirect somatic embryogenesis occurs in two phases, the first is callogenesis followed by embryogenesis that corresponds to the formation of somatic embryos [34, 45, 55, 56, 57] (Figure 4). Another characteristic of the indirect somatic embryogenesis in this species is the occurrence of somaclonal variation in cloned plants, due to the long time that callus remains in vitro [58]. Somaclonal variation is undesirable because it leads to the formation of mutants, which can compromise plant growth and development. On the other hand, its occurrence is desirable to obtain genotypes with genetic variability that can be incorporated into the coffee breeding program [59, 60]. For the induction of explant mutations are cultivated at high concentrations of 2,4 D.
Indirect somatic embryogenesis in the cultivar Mundo Novo of Coffea Arabica. (A) Leaf explant with callus presence 15 days after the beginning of cultivation. (B) Calogenesis at 40 days of cultivation. (C) Calogenesis at 90 days of cultivation. (D) Callus with somatic embryos. (E) Embryonic axis. (F) Seedlings. (G) Plant transferred to ex vitro environment.
Most studies use the Sondhal and Sharp protocol [34] for the application of indirect somatic embryogenesis in C. arabica genotypes and these usually respond with some somatic embryo production even when they have low regenerative capacity.
For the induction of callogenesis in Coffea genotypes in general it is used the protocol with MS medium [61] and the addition of phytoregulators 2,4 D and kinetin and 30 g/L sucrose [34]. At this stage, auxin 2,4 D is used at high concentration [26, 62, 63, 64, 65] which causes disturbance of endogenous auxin metabolism of explant tissue leading to cell division [8]. Auxin stress is required to obtain calogenesis in most species [12, 66]. Thus, in the induction of callogenesis, differentiated somatic cells of the explant tissue undergo re-determination, with the occurrence of cell division and proliferation events that form a non-functional cell mass, the callus. But it is also found that the induction of calogenesis in Coffea can be obtained in response to the use of other auxin types such as NAA [67, 68] and Picloram [69, 70].
Sucrose is used in high concentration to provide energy for the induction of calogenesis [34]. Biochemical analyzes in C. arabica explants indicated the occurrence of high concentration of soluble sugars in the calogenesis phase while it was lower in the formation and maturation of somatic embryos [71].
In the indirect pathway, C. arabica leaf explants initiate callus formation from procambium cells around the seventh day after the beginning of cultivation [72]. In general, from the 14th day of cultivation, it is possible to see the occurrence of small callus on the edges of explants that reach up to 3 mm in size [45]. These calluses are usually formed on only one or two sides of the explant and later reach sizes that can occupy the four edges of the explant. In early development, calluses are hyaline, but gradually they tend to oxidize. In a set of explants of the same origin subjected to indirect pathways, it is possible to find calluses that do not develop. They remain small, up to 5 mm in size. However, some of these calluses have the capacity to form somatic embryos, which indicates that they appear to have been “latent” during this time. Furthermore, it is further noted that not all C. arabica explants form calli indicating that the somatic embryogenic capacity may vary between explants from the same plant or from the same leaf.
Callus of C. arabica can reach sizes up to 30 mm around 90–120 days from the beginning of cultivation. During this period, these calluses may also become oxidized. Oxidation of explants and callus is associated with the high content of phenols present in tissues of this species. It is also observed that normally oxidized calli have the capacity to form somatic embryos although they have an appearance of senescence.
For the second phase of the indirect route, MS/2 medium is used, with NAA and kinetin added and 20 g/L sucrose, according to the protocol of Sondhal and Sharp [34]. For this purpose, calli are transferred from the calogenesis induction medium to the embryogenesis medium. In this phase, there is the initiation and development of somatic embryos from certain cells, located in some sectors of the callus, which correspond to embryogenic centers [45, 55, 57]. Somatic embryos are usually formed on the bottom of the callus, which is in contact with the culture medium and also on the top surface of the callus. On the other hand, not all callus form somatic embryos.
The induction of embryogenic cells occurs during a precise moment of callus life [19]. This induction window may vary for identical explants of the same genotype depending on the cultivation conditions used and particularly the hormonal balance [20, 73]. In the same explant, it is possible to find competent or non-competent callus sections, which indicates that genetically identical cells may respond differently to and from a particular stimulus. Embryogenic cells rapidly lose their ability to divide due to the occurrence of the differentiation event, so the moment of callus transfer to embryogenesis is crucial. As the callus gets older, embryogenic cells lose their specificity in forming embryos. Somatic embryo formation is a continuous process and several embryonic stages can occur at the same time, in the same explant, in the same culture [74].
The process of direct somatic embryogenesis in C. arabica occurs in a single phase, which is the main feature of this pathway [75] (Figure 5). In this case, explant tissue cells are already determined and competent [76] for embryogenic development, before being extracted from the explant donor leaf [77] and may differentiate into somatic embryos soon after the start of cultivation. In this pathway, embryo formation occurs from leaf explant mesophyll cells [27]. The phenomenon of direct formation of embryogenic tissue in the explant is described as cloning of certain cells [78]. This cloning is a kind of large-scale reproduction of pro-embryos. Thus, pre-embryogenic cells present in explant tissues are cloned and require less epigenetic reprogramming compared to determined embryogenic cells in the indirect process. In the direct route, the need for cellular reprogramming is different from the indirect route.
Direct somatic embryogenesis on explants of C. arabica Catuaí cultivar maintained in the dark, at 30°C, for 320 days from the beginning of the experiment. (A) Embryogenic structure (arrow), up to 15 days; (B) oxidized embryogenic structure (arrow), up to 70 days; (C) embryos (lower arrow) formed from the embryogenic structure (top arrow), up to 100 days; (D) embryos formed from the border of the explant (arrow), up to 100 days; (E) Plantlets at 320 days; (F) adult plants [75].
To respond to the direct pathway, Coffea explant cells only need contact with the cytokine-like plant growth regulator and the auxin normally inhibits its occurrence [79]. Explant edge cells differentiate into somatic embryos in response to cytokine in the culture medium [62, 80, 81, 82, 83]. The efficiency of the direct pathway also seems to be related to explants from young leaves. On the other hand, in direct somatic embryogenesis, the occurrence of somaclonal variation tends to be minor or absent, since somatic embryos are formed in a single phase.
In the direct pathway, after inoculation of the explants in the culture medium, the formation of embryogenic structures occurs, which can be visualized around the 15th day of culture [75] (Figure 5A). Embryogenic structures are formed, on average, on one or two sides of the rectangular leaf explant. Normally, these structures range in size from 2 to 4 mm (Figure 5B) and remain this way until the end of cultivation. About 50 days after the start of cultivation the structures start to oxidize (Figure 5C) and by 150 they are completely oxidized [75]. The formation of somatic embryos usually starts from 90 days of cultivation but in low quantity and around 120 days this number tends to increase. Somatic embryos in addition to being formed at the edges of explants (Figure 5D) also develop over the surface of embryogenic structures (Figure 5C).
The main product of somatic embryogenesis is the somatic embryo. Somatic embryos are structures that go through different stages of development until they reach that of a plant [18, 28]. These stages of development are perfectly organized, with all the morphological characteristics corresponding to the same stages of development of zygotic embryos [18, 84, 85] being globular, heart, and seedling. Somatic embryos are bipolar morphological structures, presenting radicle, hypocotyl and cotyledons. The somatic embryo does not exhibit endosperm differentiation and is independent of explant tissue after initiation and development. Somatic embryos do not go through the maturation or desiccation phase as in zygotic embryos. This system is not connected to the vascular tissue of the mother or explant during its initiation and development [86]. Moreover, in the direct pathway, it is possible to find somatic embryos at different developmental stages in the same explant [16]. This response pattern can also be found in the indirect callus.
Somatic embryos formed by the direct and indirect pathways are transferred to the germination stage and generally use MS/2 culture medium added 20 g/L sucrose and without plant growth regulators. This same medium can also be used for embryo growth and development to the seedling stage. These observations suggest that Coffea somatic embryos may have a hormonal balance that favors differentiation of developmental stages, requiring only nutrients from the culture medium without phytoregulators for germination and growth and development.
The control of the occurrence of somatic embryogenesis in Coffea is not yet completely identified. Some authors relate the genetic pattern of the species with the absence or low responsiveness [87]. Knowing the factors that control the occurrence of somatic embryogenesis in C. arabica will allow to optimize its application and especially the direct pathway. The high or low capacity of somatic embryogenesis of a species is related to the presence of competent cells or not in the explant, inherent to their totipotency [88]. The maintenance of somatic embryogenesis capacity requires the use of conditions that maintain the proliferation of determined and competent cells [86].
Somatic embryogenesis regeneration capacity is also associated with other factors such as explant donor plant developmental stage, explant donor plant physiological conditions, explant position relative to the plant [89], in vitro culture conditions and mainly of plant growth regulators. The seasons influenced the indirect somatic embryogenesis response of plant explants to eight C. arabica genotypes in the field [56]. Explants formed more somatic embryos in the fall-winter season than in the spring-summer season.
In indirect somatic embryogenesis of C. arabica, calli are induced and initiated in the absence or presence of light, but they reach a larger size only if maintained in the absence of light [45, 86]. The size of these callus increases gradually each month, and can reach sizes up to 30 mm.
On the direct pathway, C. arabica explants also have difficulty responding in the presence of light. In this way, at the edge of the explants, small structures are formed, which are called embryogenic structures, which remain without change in size and shape in the presence or absence of light.
Cultivation temperature is another factor that may influence the somatic embryogenesis response. Leaf explants of cultivar Catuaí and two hybrids showed higher formation of somatic embryos at 30°C compared to 25°C [90].
Several studies indicate that phytoregulators play a decisive role in controlling the formation of somatic embryos in Coffea leaf explants, which is the most explored aspect on this subject. For the induction of the indirect pathway in C. arabica, the auxin/cytokine combination, which is already well established for this species, is generally used. In this pathway, auxin 2,4 D has been the most used to induce callogenesis in C. arabica leaf explants. This auxin is considered strong and is also used for the induction of anthers [39, 40] and roots [47, 48].
For induction of the direct pathway, most studies use cytokine without auxin because it tends to inhibit its occurrence. However, the efficiency of the direct pathway response may vary depending on the type and concentration of cytokine employed. A pioneer study showed that 6-BA at 5 μM dose matched direct pathway induction in C. arabica explants [91].
The formation of somatic embryos was also obtained from C. canephora explants inoculated in MS medium only with addition of different cytokines being 2-iP, ZE, Ki and 6-BA, all at a concentration of 5 μM [92]. Explants formed somatic embryos in the presence of all cytokines, but responses varied according to cytokine type. The 2-iP was more efficient than the ZE, Kin and 6-BA. In this study, it was also found that auxins used at different concentrations inhibited the direct somatic embryogenesis of these genotypes. In another study, Zeatin caused the direct pathway response in C. canephora explants [87]. Cytokine 2-iP also caused direct pathway induction in Coffea [93, 94]. In another study, it was found that 2-iP concentrations of 7.5 and 10 μM favored a greater number of somatic embryos than the 2.5 and 5 μM doses [95].
Synthetic cytokine 6-benzylaminopurine also has the ability to induce the direct pathway in C. arabica explants [69, 91, 96, 97, 98]. The 6-BA used at 30 μM concentration caused higher production of somatic embryos than the 10 and 20 μM doses in leaf explants of the cultivar Mundo Novo de C. arabica [46]. But although the 6-BA concentration was high, embryo production was reduced and the process also took place over a long time. However, this result is interesting because it favors the cost reduction of clonal seedling formation since 6-BA is a cheaper and available synthetic cytokine than zeatin and 2-iP. Cytokine TDZ has also been used to induce regeneration of C. arabica somatic embryos via the direct pathway [47, 48]. Leaf explants of cultivar IAPAR 59 and C. arabica hybrid Sachimor showed direct somatic embryogenesis response in the presence of TDZ at concentrations of 2.27; 4.54; 6.81; 9.08; 13.62 μM, but with low embryo production [96].
The literature shows that it is well established that the Coffea direct pathway only occurs in the presence of cytokine, but it is also possible to find studies in which explants of this species formed somatic embryos in the presence of auxin. Explants of cultivar Acaia Cerrado formed somatic embryos when grown in a single culture medium with addition of kinetin, GA3 and NAA [67]. In another study, it was found that leaf explants of cultivar Mundo Novo submitted to direct pathway showed high production of somatic embryos in response to 2-iP treatment associated with brassinosteroid compared to 2-iP alone control [99]. On the other hand, explants treated with brassinosteroid alone without cytokine formed only embryogenic structures without any occurrence of somatic embryos (Figure 6).
Direct somatic embryogenesis from leaf explants of C. arabica. (A) Macroscopic view of coffee leaf explants after 60, 90 and 130 days of culture on induction medium supplemented with 10 μM 2-iP + 1.0 μM 24-epiBR. (B) Number and (C) size of somatic embryos obtained by treatment during the somatic embryogenesis process. (D) Somatic embryo germination. (E) Elongating regenerated plantlets after 90 days on ½MS medium. Bars = 0.5 and 2 cm [99].
The stress factors have been related to promoting the acquisition of embryogenic competence in different species [20, 66]. Stressful conditions can also influence the acquisition of embryogenic competence in different species [19, 20, 30, 66, 100, 101]. Studies indicate that the occurrence of somatic embryogenesis is strongly related to the exposure of explants to some high intensity stress factor and or the high concentration of plant growth regulator [22].
Osmotic stress treatments alter the explant\'s environment. This change in tissue/organ growth conditions may represent the estrum that enables cells to undergo changes in developmental processes and make them competent for inductive signals for somatic embryogenesis. Thus, the stress-induction system is composed of two phases: the acquisition of embryogenic competence and the formation of the somatic embryo [102].
Of the responses found in different species, it was shown that the stress-induction system could cause a greater formation of somatic embryos [101, 102, 103, 104, 105, 106, 107] although its forms of control and action are unknown and this aspect has been little studied in the culture of coffee plants. It was verified that C. canephora explants submitted to direct somatic embryogenesis formed a greater number of embryos in a medium to which 3 g of agar had been added, than in one containing 6 g [106] (Figure 7). This result was indirect evidence that altering the osmotic potential of the culture tends to favor the ability of somatic embryogenesis. In another study, it was found that the alteration of the osmotic concentration of the culture medium influenced the embryogenesis response [108]. The use of 7% PEG 6000 caused a greater formation of somatic embryos in foliar explants of the C. arabica genotypes AC1 and cultivar Mundo Novo than the use of 5% PEG 6000. This reagent has a high molecular weight and is inert, non-ionic, non-toxic, water soluble [109], not absorbed by vegetable cells and alters the osmotic potential when added to a culture medium.
Effect of 3 and 6 g/L agar on the direct somatic embryogenesis in explants of C. canephora cultivar “Robusta 2264 Mar” maintained at 25°C in the dark [106]. (A) 6 g/L of agar: explants with curvature without contact with the medium. (B) Explant with few somatic embryos in the presence of 6 g/L agar. (C) 3 g/L of agar: the medium is in contact with the border of the explant. (D) Explant with many somatic embryos in the presence of 3 g/L agar.
Somatic embryogenesis contributes to coffee crop both in relation to breeding programs and its production chain. Little is known about the factors controlling somatic embryogenesis in Coffea genotypes. But it is known that plant hormones act in controlling the occurrence of this process. In addition, studies have shown that environmental and mainly stress factors applied during the cultivation condition are involved in the control of somatic embryogenesis in Coffea.
Murashige and Skoog 2,4-dichlorophenoxyacetic acid N6-(2-isopentenyl)adenine naphthylacetic acid 6-benzyladenine kinetin zeatin thidiazuron polyethyleneglycol 6000
Dengue (DEN), Chikungunya (CHIK) and Zika (ZIKV) are arboviruses transmitted by the mosquito Aedes aegypti and known as Aedes-borne-diseases. These diseases are associated with high morbidity and low mortality and considered a public health problem [1]. In the 2015, the ZIKV outbreak was considered an international emergency because infection in pregnant women was related to the increase of congenital abnormalities in the fetuses [2, 3, 4]. Vertical transmission of ZIKV was demonstrated by the RNA viral detection in placenta, amniotic fluid, serum and fetal brain in products with microcephaly, abortions or in autopsies of affected newborns and offspring of symptomatic or asymptomatic mothers [5, 6]. The clinical manifestations of Zika in general population and pregnant women were mild rash, conjunctivitis and low fever, although up to 80% remain asymptomatic, higher than DEN (19%) and CHIK (45%) [1, 2, 7, 8].
ZIKV is a Flavivirus with an Asian and African lineages [9, 10]. Its RNA genome (10.8 kb) encodes for a 3419-amino acid polyprotein which form a capsid (C), a membrane precursor (prM), a wrap (E) and seven non-structural proteins (NS1, NS2A, NS2B, NS3, NS4A, NS4B and NS5) [11]. ZIKV interferes with the neural development through decreased neural progenitor cells, arrest in neuronal migration and/or disruption of the maturation process of the fetus central nervous system (CNS) [12, 13]. The congenital Zika virus syndrome (CZVS) is a pattern of congenital defects associated with ZIKV infection during the pregnancy so ZIKV pathogenicity and virulence is currently studied [14, 15, 16, 17, 18].
The surveillance of ZIKV infection during pregnancy in endemic regions requires screening and detection of fetal morphological abnormalities [19]. An integrated intervention model for the prevention of Zika and Aedes-borne diseases, that includes primary health care services, gynecologists, obstetricians, pediatricians, geneticists and neurologists should be mandatory. Strategies to prevent and control the vectors and reduce the risk for diseases transmission should be strengthened, particularly for protection of women in reproductive ages [20, 21].
Here we report final the clinical manifestations observed in a cohort of pregnant women and the congenital abnormalities in fetus and newborns during a Zika transmission period (2016–2018) in South Mexico.
We developed a prospective study to quantify the incidence of disease and infection in a cohort of pregnant women and newborns during an epidemic period of Zika (2016–2018). One of the main objectives of the study was to know the effect of prenatal exposure to ZIKV. The cohort included pregnant women, preferably in the first trimester of pregnancy. The follow up included clinical and molecular detection of ZIKV, DEN and CHIK. Obstetric ultrasound was performed to recognize morphological abnormalities in the fetuses.
During the development of this study, information on health care was provided to pregnant women and their partners, highlighting the importance of family planning and the use of condoms as a method to prevent the transmission of ZIKV, in addition to the implementation of measures to prevent the breeding of the Aedes aegypti and mosquito bites at home. We also provided information about general healthy habits, family planning and prevention of sexually transmitted diseases.
After the informed consent was signed, women were interviewed, and their medical records including periconceptional and pregnancy history, were collected. The recruitment included 884 families (3993 people) from the cities of Merida, Ticul, and Progreso de Castro in the Yucatan State, South-east Mexico [16]. Merida and its metropolitan area (≈1 million inhabitants), comprises ≈50% of the Yucatan population. Progreso de Castro (37,400) and Ticul (32,000) are smaller urban areas. We enrolled consenting pregnant women from these areas from July 1, 2016 to June 2018 including pregnant women referred by physicians in primary care facilities or hospitals within the areas of our cohort study.
Patient monitoring included a monthly visit for clinical assessment and sample collection (blood and urine for RTC DEN/CHIK/ZIKV), weekly follow-up by text messages, and complete access to a telephone to report any clinical signs in pregnant women, their newborns, or any family contact. Tissues as umbilical cord blood, placental, amniotic fluid and breastmilk were collected, when possible for assessment of RT-PCR RNA ZIKV (TRIOPLEX) [22]. Other biochemical tests were performed to rule out Toxoplasma, Rubella, Cytomegalovirus, Herpes, Syphilis and HIV [23]. Depending of the mother or/and fetus risks, other test such as biochemical serum test and karyotype in amniotic fluid were taken. Ultrasound scanning was performed at the first contact and every 2 months. At the first visit, a questionnaire was fill up to establish the clinical-epidemiologic profile. The follow-up ended when the pregnancy was completed by delivery or fetal loss, or the participant withdrew from the study.
Newborn follow up included: clinical evaluation (anthropometric measurements, APGAR score and physical exam) and sample collection for RT-PCR for DEN/CHIK/ZIKV [20, 21, 22, 24]. Patients were followed up for 24 months of life for early recognition of morphological anomalies and recorded the neurological development. These evaluations included genetic, neurologic, ophthalmologic, and audiologic evaluation. Microcephaly was defined as a cranial circumference ≥2 SDs below the mean for the age and sex of the baby, following the recommendation of the World Health Organization [25, 26, 27, 28].
At the time when the cohort study was ongoing, in the Genetic Service in the center of Investigations Dr. Hideyo Noguchi/UADY received pregnant women with morphological abnormalities detected in their fetuses, or newborn patients in whom ZIKV prenatal infection was suspected. These patients were not integrated to the cohort, but a clinical follow-up was granted. Sample collections for RT-PCR for DEN/CHIK/ZIKV were offered.
The study integrated 130 pregnant women with average age of 25 years. No major differences in age distribution and socioeconomic status between ZIKV-positive and ZIKV-negative mothers were observed. Of all women, 40 (30%) were in the first trimester of pregnancy upon admission to the study, 62 (48%) in the second trimester and 28 (22%) in the third trimester (Table 1).
Total pregnant women | Positive for ZIKV in blood/urine | Negative for ZIKV in blood/urine | Trimester of pregnancy when enrolled pregnant women (130) | |||
---|---|---|---|---|---|---|
N:130 | N:39 | N:91 | 1st N:40 | 2nd N:62 | 3rd N:28 | |
Mérida | 75 (58%) | 27 (69%) | 47 (52%) | 16 (40%) | 37 (60%) | 22 (79%) |
Progreso | 4 (3%) | 0 | 4 (4) | 0 | 2 (3%) | 2 (7%) |
Ticul | 51 (39%) | 12 (31%) | 41 (44%) | 24 (60%) | 23 (37%) | 4 (14%) |
15–19 years | 29 (22%) | 8 (28%) | 21 (72%) | 6 (15%) | 16 (26%) | 7 (25%) |
20–29 years | 70 (54%) | 22 (31%) | 48 (69) | 22 (55%) | 34 (55%) | 15 (54%) |
30–39 years | 30 (23%) | 9 (23%) | 21 (%) | 12 (30%) | 12 (19%) | 6 (21%) |
40–49 years | 1 (1%) | 0 | 1 (%) | 0 | 0 | 1 |
Signs and symptoms | 21/39 (%) | |||||
Exanthema | 21/21 (100%) | |||||
Pruritus | 11/21 (52%) | |||||
Joint edema | 7/21 (33%) | |||||
Conjunctivitis | 16/21 (76%) | |||||
Retro-orbital pain | 10/21 (55%) | |||||
Hyperemia | 5/21 (22%) |
Clinical profile in persistence in serum samples | Total N:15 | Symptomatic N:9 | Asymptomatic | p |
---|---|---|---|---|
Age (years) | 24.7 ± 4.4 | 24.2 ± 3.3 | 23.8 ± 6 | 0.874 |
Persistence (days) (interval) | 45.93 ± 24.4 (17–19) | 50.11 ± 30.58 (17–97) | 39.67 ± 9.89 (29–52) | 0.363 |
Pregnancy trimester | ||||
First | 6 (40%) | 3 | 3 | |
Second | 8 (53%) | 6 | 2 | |
Third | 1 (7%) | 1 |
Summary of health, medical and laboratory data collected from pregnant women in the cohort.
Positive results in blood/urine for ZIKV were found in 39 pregnant women, 31% (n = 13/39) at the first trimester, 52% (n = 20/39) in the second trimester and 15% (n = 6/39) in the third trimester.
Of 130 pregnant women, 39 (30%) were RNA-ZIKV positive at the time of the recruitment and 91 were negative (70%). From these, 11 (12% of initially RNA-ZIKV negative) became positive during the surveillance.
Of the 28 symptomatic patients (negative or positive ZIKV), the most common symptoms were exanthema (75%), pruritus (39%) and conjunctivitis (57%). Of the 21 patients with RT-PCR ZIKV-positive, 75% were symptomatic and 25% were asymptomatic. Even so, more than half (64%) of the women had at least, more than one sign or symptom compatible with an Aedes-borne acute infection. Most prevalent symptoms were exanthema (100%), conjunctivitis (76%), pruritus (52%) headache (50%), retro-orbital pain (55%), arthralgia (33%), hyperemia (22%) and joint edema (6%). No hemorrhagic or systemic complications were observed in any patient (Table 1). Differences in the distribution of ZIKV-positive vs. ZIKV-negative women between the studied cities were not founded.
Of the 39 ZIKV-positive pregnant women, persistent RNA-ZIKV was detected in 38.5% (15/39) of the patients during 14 days after the initial symptoms or the last PCR detection. Of these, six women were in the first trimester of gestation, eight in the second and one in the third. Within the group of symptomatic women (n = 28), nine (9/28) presented persistence of RNA-ZIKV, three in the first trimester and six in the second. Of these, 100% (9/9) presented rash, 55% (5/9) conjunctivitis and 33.3% (2/9) fever. Only 22.2% (2/28) reported having three symptoms, fever, rash and conjunctivitis (Table 1).
All pregnancies of women in the cohort have ended the pregnancy. Two fetal losses (one in the first trimester and one in the third trimester) occurred in ZIKV-negative mothers. Of all newborns alive, 3% were preterm (two in ZIKV-negative mothers and one in a ZIKV-positive moth group). No newborns or products of conception were positive for RNA-ZIKV. Clinical evaluation of Apgar scores in the newborns did not show significant differences between positive/negative ZIKV mothers. Also, microcephaly was not founded in any newborn. One newborn of Zika-positive mother died the first days of life due to gastroschisis (Table 2).
Newborn residence | Merida N:67 | Progreso N:2 | Ticul N:46 | Total births N:115 | |||
---|---|---|---|---|---|---|---|
Percentile | Percentile <3 N (%) | Percentile 3–97 N (%) | Percentile >97 N (%) | Total | |||
At birth | End of the study | At birth | End of the study | At birth | End of the study | ||
Birth weight percentiles | 5 (4) | 1 (1) | 110 (96) | 114 (99) | 0 (0) | 0 (0) | 115 (100) |
Birth height percentiles | 3 (3) | 0 (0) | 112 (97) | 115 (100) | 0 (0) | 0 (0) | 115 (100) |
Birth head circumference percentiles | 2 (2) | 1 (1) | 112 (97) | 114 (99) | 0 (0) | 0 (0) | 115 (100) |
Newborn evaluations | |||||||
From mothers ZIKV negative during pregnancy N:80 | From mothers ZIKV positive during pregnancy N:35 | ||||||
N (%) | Alterations N (%) | N (%) | Alterations N (%) | ||||
Newborn blood | 29 (36) | 27 (77) | |||||
Newborn urine | 32 (40) | 14 (40) | |||||
Pediatrics | 39 (49) | 30 (86) | |||||
Ophthalmology | 19 (24) | 31 (89) | 3 (10) | ||||
Auditory screening | 51 (64) | 30 (86) | 2 (7) | ||||
Placenta | NA | NA | 17 (49) | ||||
Umbilical cord | NA | NA | 17 (49) | ||||
Genetics | NA | NA | 35 (100) | ||||
Metabolic screening | NA | NA | 34 (97) | ||||
Transfontanelar and abdominal ultrasound | NA | NA | 22 (63) | ||||
Age of newborns who completed the study | |||||||
Age | Mother ZIKV − | Mother ZIKV + | Total | ||||
1–6 months | 16 (22%) | 0 | 16 (16%) | ||||
7–12 months | 25 (34%) | 3 (10%) | 28 (27%) | ||||
13–18 months | 20 (27%) | 17 (59%) | 37 (36%) | ||||
19–23 months | 12 (17%) | 9 (31%) | 21 (21%) | ||||
Total | 73 | 29 | 102 |
Newborn cohort follow-up.
During the ZIKV epidemiological period in Yucatan, 10 patients attended the medical genetics clinic in CIR Hideyo Noguchi with a reference diagnosis of microcephaly, arthrogryposis and/or ventriculomegaly. Two of them were excluded from the follow up because ZIKV prenatal symptoms were absent in the mothers and microcephaly and intracranial calcifications were discarded in the patients. Preconceptional, prenatal and perinatal backgrounds were investigated in all patients. Only one woman took folic acid 6 months before the conception and none used mosquito repellent during pregnancy, even they were living in an endemic region.
Of the newborns evaluated, clinical symptoms of Zika were reported only in two mothers in the first trimester of gestation, but only one was tested positive for RT-PCR Zika. One more woman reported symptoms of Zika 1 month before conception. During the pregnancy, intrauterine growth restriction in 4/8 (50%) and oligohydramnios in 2/8 (25%) were reported. Only one patient was reported prenatally with microcephaly, intracranial calcifications and ventriculomegaly (patient 5) (Table 3). Five pregnancies were ended by caesarean section and three by vaginal delivery between second semester of 2016 and the second semester of 2017.
Patient/sex | Mother Zika symptoms (MoG1) | WoG2 | Neonatal head circumference (z score) | Birth weight for gestational age | Phenotype | Intracranial calcification | Zika IgM InBios newborn/mother6 | Final diagnosis |
---|---|---|---|---|---|---|---|---|
1/Male | No | 38 | Microcephaly (−3) | Small | Microcephaly MMC3 | Yes | −/− | CZS/neural tube defect |
2/Male | Yes (2) | 37 | Normocephaly (10) | Small | IUGR4 | NR5 | −/− | IUGR |
3/Male | No | 38 | Microcephaly (−3) | Appropriated | Microcephaly | Yes | −/− | CZS |
4/Male | Yes (2) | 37 | Normocephaly (3) | Small | Asymptomatic | NR | −/− | IgM positive for toxoplasma |
5/Male | No | 33 | Normocephaly (10) | Appropriated | Microcephaly Arthrogryposis | Yes | Positive in serum/− | CZS |
6/Male | No | 39 | Microcephaly (−3) | Appropriated | Microcephaly | Yes | −/− | CZS |
7/Female | Yes (2) | 40 | Normocephaly (3) | Small | Postnatal microcephaly | NR | −/− | CZS |
8/Female | No | 38 | Macrocephaly (97) | Appropriated | Macrocephaly Arthrogryposis | Normal | −/− | Amyoplasia congenital |
Main findings of eight patients evaluated for suspected ZIKV prenatal infection.
Month of gestation.
Weeks of gestation.
Myelomeningocele.
Intrauterine growth retardation.
NR: not reported.
Serum and urine were taken at born in newborns and theirs mothers.
All newborns were at term, except one. Of them, six were males and two were females. Three males had microcephaly with less than three standard deviations and one male with microcephaly less than two standard deviations. One female had macrocephaly. All babies from the three mothers with positive ZIKV symptoms during o before pregnancy were born with normocephaly, but were small for gestational age. One of these babies, a female, developed microcephaly within the first 6 months of life. Of all babies follow up, two had arthrogryposis, one with microcephaly and one with macrocephaly. Both of them were child from non-symptomatic mothers. Only five patients were evaluated with axial computerized tomography with positive intracranial calcifications founded in four. All of them were from asymptomatic mothers.
All patients and their mothers were tested for RT-PCR for ZIKV/DEN/CHIK in serum and urine. TORCH was also performed. RNA-ZIKV was obtained only in serum of one male with microcephaly, arthrogryposis and intracranial calcifications. This male was from an asymptomatic mother. Antibodies IgM of toxoplasma were detected in one asymptomatic male whom has clinical symptoms of Zika during first trimester of pregnancy.
The WHO declared the ZIKV outbreak in South America and the associated increase in neurological disorders and neonatal malformations a “public health emergency of international concern” [2], and the CDC issued the ZIKV epidemiological alert, recommendations of high-risk Mexican territories was recognized by the National Health Service. Even so, the recognition of the ZIKV infection symptoms by patients and health workers, were underestimated [29]. In Mexico, first patients with ZIKV infection were documented early in 2016 even so, captured mosquitoes in early 2015 were recognized with ZIKV infection [30].
After the observed relationship between prenatal Zika infection and the risk of congenital defects in Brazil and Colombia, we realized a cohort with detailed evaluation of pregnant women searching ZIKV infection and congenital abnormalities [1, 31, 32].
The women in this study with the highest proportion of symptoms with ZIKV were those from 20 to 29 years, different from other studies that have reported the highest symptomatic disease ratio among women >30 years of age [33, 34]. In our studies this can be explained because the highest incidence of pregnancies in women was aged 20–29 years [1]. In clinically affected women, univariate analyzes showed that the most sensitive clinical sign was the exanthema, but it was also the least specific. The triad, conjunctival hyperemia, joint edema and exanthema had the highest level of specificity [35].
In pregnant women with exanthema without fever or other symptoms should to suspect ZIKV infection. In this study, ZIKV/DEN/CHIK co-infection was not identified neither [36].
The persistence of RNA viral in pregnant women has been described previously, reported a patient positive for RNA-ZIKV until 10 weeks after the onset of symptoms. In this study, the maximum viremia persistence was 97 days, but a quarter of positive mothers had viremia for more than 8 weeks [37]. From all RNA ZIKV-positive mothers, only 50% of the symptomatic group had persistence of ZIKV for more than 8 weeks. Other series reported longer RNA ZIKV viremia in symptomatic women than asymptomatic and other study obtained similar results in serum, in a range of 14–63 days; although in this study, we detected two pregnant women who had viremia older than 90 days [33, 34]. A study reported viral persistence in five pregnant women, of which 80% were symptomatic and only one case was asymptomatic. In this study, a higher percentage of asymptomatic viral persistence cases were found with 40%. In the symptomatic group, the average number of days of persistence after the onset of symptoms was greater than that reported, no relationship was observed between viral persistence and the presence of abnormalities in pregnancy products [38, 39].
The confirmatory tests which provide evidence for prenatal infection by ZIKV were conducted based on tests in the mother and the newborn were made with viral RNA isolated from biological fluids and placental tissues performed with the Trioplex kit of the CDC. The ZIKV genome was detected in cerebrospinal fluid, cardiac fluid, chorionic villi, fetal face of the placenta, serum and urine [26]. Vertical transmission studying the placental and fetus tissue also failed been demonstrated [40, 41].
Clinical variability in patients in whom ZIKV infection were prenatally suspected was described previously, in this cohort, congenital abnormalities associated to ZIKV were not observed in fetus, stillborn or newborns [1, 17]. Only one patient with gastroschisis was detected but the prenatal ZIKV infection in her mother was after detection of this abnormality.
Congenital Zika syndrome (CSZ) was observed in the patients evaluated from the Genetics Service out of the initial cohort. In them, Zika symptoms in mothers, microcephaly, arthrogryposis and intracranial calcifications were observed as in other reports [1, 17, 18]. Establishing the final diagnosis of ZIKV prenatal infection was difficult especially in asymptomatic mothers or in mild affected babies [31]. In two patients, the final diagnosis was toxoplasma and congenital amyoplasia. Asymptomatic or mild symptomatic women would be a seriously limitation from early ZIKV infection. To define diagnostic of prenatal ZIKV is important: (1) to establish the follow up of the affected patient, (2) to limit the tests related to others genetic diseases that share symptoms with CSZ and (3) to establish the specific risk of recurrences of congenital abnormalities in subsequent pregnancies in the mother.
In this study, symptomatic or asymptomatic pregnant women with a high prevalence for ZIKV are reported, however there was no positive newborn or with malformations associated with ZIKV, despite the genetic consultation, the presence of CSZ, laboratory-confirmed if present so doctors should maintain a realistic perspective of the impact of ZIKV on pregnancy. And despite the uncertainties, future mothers should receive adequate, systematic advice and the best planned obstetric surveillance, always considering the gestational moment of maternal ZIKV infection and accept that there is gestational risk for different elements of the CZS phenotype in risk areas ZIKV transmission.
This research and publication was made possible through support provided by and the Canadian Institutes of Health Research (CIHR) and IDRC (preventing Zika disease with novel vector control approaches Project 108412) and the Office of Infectious Disease, Bureau for Global Health, US Agency for International Development, under the terms of an Interagency Agreement with CDC. The opinions expressed herein are those of the author(s) and do not necessarily reflect the views of the US Agency for International Development. The recipient of this support was the Yucatan Autonomous University and its affiliated Regional Research Center “Hideyo Noguchi.”
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