\r\n\t
\r\n\tThis book is intended to discuss several aspects, starting from the plate tectonics to the sedimentary basins. Main aspects of the plate tectonics include the continental drift, the palaeo-magnetism and the morphologic setting of the oceans. The continental drift is linked to the name of the German geophysicist Alfred Wegener, who suspected that the continents should move laterally, observing the correspondence between the shorelines of both sides of the Atlantic Ocean.
\r\n\t
\r\n\tHe hypothesized that a great continent, namely the Pangea, broke up and was divided into great blocks, which after started to drift on the earth's surface. The isostatic adjustments of the earth's crust necessarily require vertical movements of the continental blocks in order to compensate the variations of loading on the earth's crust.The oceanic expansion has been supported by the polarity reversals, recognized for the first time in the lava flows by having directions of the palaeomagnetic field divergent of 180°. This allowed a chronological scale generation of the geomagnetic reversals, based on a uniform rate of expansion in the southern Atlantic Ocean. The topography of the oceans is characterized by three main physiographic provinces, including the oceanic ridge surrounding the oceanic basins, adjacent to the continental margins. The earth's crust is the part of the earth overlying the Moho discontinuity and may be divided in oceanic crust, transitional crust, and continental crust. This book intends to provide new insights concerning the geological implications of plate tectonics, including the sequence stratigraphy of passive continental margins, the sedimentological and palaeoceanographic aspects and the marine geology of the continental margins. New contributions on the continental margins (passive, active and transcurrent) are also acknowledged. Another main topic of this book is represented by the ophiolites, a sequence characterized by the vertical association of pillow lavas, radiolarites, and peridotites. The ophiolitic sequence is often overlain by sedimentary rocks (radiolarites, pelagic limestones) and may be associated with chromite bodies and rocky bodies, both intrusive and effusive. They represent allochtonous fragments of old oceanic crust. Also, contributions in terms of sedimentation and tectonics and their general concepts are also welcome. Finally, a basic topic of this book is represented by the sedimentary basins in different geodynamic settings, including the spreading related settings, the subduction related settings and the continental collision related settings.
Oxygen is a potentially toxic molecule, although the aerobic organisms must survive. During biochemical reactions vital to living organisms, oxygen reduced, resulting in intermediate metabolic products known as reactive oxygen species (ROS), which cause oxidative damage to many tissues. ROS is called “oxidant” or “free radical” due to the oxidative destruction they create and form in all living organisms that metabolize molecular oxygen [1]. Free radicals are very short-lived reagents, separating other electrons around high-energy electrons and disrupting their structure. Therefore, free radicals are dangerous to the organism [2, 3].
There are many defense mechanisms in the organism to prevent ROS formation and the damage caused by them. These mechanisms are generally called “antioxidant defence systems” or “antioxidants” for shortly [4]. Antioxidants serve in the body by controlling the metabolization and levels of free radicals formed as a result of normal metabolism or pathological conditions and preventing or repairing the damage that may occur by these radicals [5, 6]. In the living organism, there is a balance between the rate of formation and elimination of free radicals. This balance is called the “oxidative balance” that prevents the body from being affected by free radicals. If the oxidative balance is disturbed in favor of free radicals, oxidative stress occurs, which is one of the factors that ultimately causes damage to cells and tissues [7, 8].
All biomolecules are subject to free radical attack. But among them, lipids are the most easily affected [9]. The membranes and cell organelles that surround the cells contain a large amount of unsaturated fatty acids (PUFA). Due to the high affinity of the oxygen molecule to PUFA in the cell membrane, there is a close relationship between the two. Oxygen binds to double ligaments in PUFA found in tissues, causing lipid peroxidation [10, 11]. Lipid peroxidation is a harmful chain reaction. It can directly damage the membrane structure or damages by producing reactive aldehydes. These compounds are either metabolized at the cell or diffuse damage from initial domains to other parts. Thus, the structure of lipids in the cell membrane is disturbed, permeability for ions increases and cell death occurs [12].
Reactive nitrogen species (RNS) are another reactive species group that is as important as ROS. Nitric oxide (NO), a free radical, is the most substantial member of this group. It has the ability to directly or indirectly affect cells and tissues. As it can directly affect itself, while indirect are mediated RNS produced the interaction of NO with superoxide radicals (O2−•) or oxygen (O2). Most of its direct physiological effects are cyclic guanosine 3′,5’monophosphate-mediated (cGMP). It can also interact with proteins containing iron and zinc or create S-nitrosothiols through nitrosylation [2, 13, 14, 15, 16, 17]. Many antioxidants work in the organism to prevent damage caused by ROS and RNS. Antioxidants, present in considerably lower concentrations than the substrate, are substances that can protect an oxidation-sensitive substrate from peroxidative damage. Biological antioxidants contain all compounds that protect cellular lipids, proteins and nucleic acids from peroxidative damage. One of these compounds is thiols. Thiols play a crucial biologic role among these compounds due to their capacity to react with free radicals and their strong reducing capabilities [18].
Thiols are a member of the class of organic compounds containing sulfhydryl group (-SH). They consist of a hydrogen atom and a sulfur atom attached to a carbon atom [19]. In the organism, in the oxidation created by ROS, excess electrons pass to thiols and disulphide bonds are formed. Due to the oxidative balance, electrons in these reversible bonds can return to thiols. The antioxidant ability of thiol-disulphide homeostasis is important in enzymatic reactions, signal transduction, detoxification, transcription, regulation of enzymatic activation, cellular signaling mechanisms and apoptosis reaction [20, 21, 22]. With these in mind, in this chapter, reactive oxygen species, nitric oxide, lipid peroxidation, oxidative stress and the role of thiols in antioxidant defense is summarized and has been explained how thiol status changes in conditions associated with oxidative stress.
Free radicals and non-radical intermediates are commonly referred to as ROS. Species that contain unpaired electrons are free radicals. Species with unpaired electrons in their structure are free radicals, and because of this unpaired electron shell, free radicals have high reactivity. The most important sources of free radicals in biological systems are oxygen and nitrogen [23]. In the electron transfer chain, cells constantly convert small amounts of O2 to ROS. ROS can be produced in many ways in the organism, including the respiratory burst that occurs in active phagocytes [24]. Respiratory burst, also known as “oxidative burst”, is the event of a rapid release of ROS such as O2−• and hydrogen peroxide (H2O2) from different cell types. Generally, these chemicals are produced by immune system cells such as neutrophils and macrophages as a result of infection of the organism by bacteria and fungi [25, 26]. In phagocytes, the respiratory burst that occurs to break down bacteria plays an important role in the immune system. O2−• is produced by nicotinamide adenine dinucleotide phosphate (NADPH) oxidase, a family of enzymes commonly found in many cells. In neutrophils and monocytes, myeloperoxidase is involved in combining H2O2 with CI-to produce hypochlorite, which plays a role in destroying bacteria [25].
Reactive oxygen species formation, as natural result of aerobic metabolism, has an important role in maintaining tissue oxygen homeostasis. O2−•, H2O2 and hydroxyl (•OH) radicals are produced in mitochondria as normal metabolic by-products. Other important intracellular sources of ROS are peroxisomal enzymes, flavoprotein oxidases and microsomal cytochrome P450 enzymes [27]. ROS also play an important role in various physiological processes such as the functioning of normal vascular cells and maintenance of vessel diameter regulation [28]. It is stated that in biological systems, ROS participate in differentiation, proliferation, growth, apoptosis, cytoskeleton, migration and contraction regulation and play a role in the control of inflammatory response by stimulation of growth factor [29, 30].
Mitochondria are the main source of the O2−• anion most commonly found under physiological conditions [31]. The O2−• anion is formed by adding an electron to dioxygen. However, it is unstable because it can react spontaneously in aqueous solutions and convert into H2O2 and O2 [32]. In the respiratory chain, in particular, the O2−• anion is formed by the leakage of electrons from complex I and III into O2. The rate of formation depends on the number of electrons and increases with hyperoxia and high glucose concentration. The decrease in oxygen availability, acting as the final electron acceptor for complex IV, causes the accumulation of electrons. Because the O2−• anion is charged, it cannot pass through the membrane and remains in the mitochondrial matrix [23]. O2−• anion can convert to O2 by reducing Fe3+ ion to Fe2+. O2−• is detoxified with superoxide dismutase (SOD) enzymes and converted into H2O2 [32, 33].
Hydrogen peroxide is not a free radical, but it is mentioned in ROS because it is closely related to the detoxification or generation of free radicals [32]. It is not polar, so it can easily pass through the membranes of cells and organelles and therefore acts as a secondary messenger in a wide range of signal transduction pathways. It is detoxified into the water by catalase (CAT) and glutathione peroxidase (GPx). Imbalances in O2−• and H2O2 levels can result in the formation of •OH radicals, which are far more dangerous than them [4]. The main source of the •OH radical is metal-catalyzed Haber-weiss reaction [34] and the second source is the Fenton-type reaction [35]. It has been reported that the •OH radical can react with any biological molecule in its immediate vicinity and there is no known scavenger because it is very reactive [23].
Nitric oxide is produced during the reaction which arginine is converted to citrulline catalyzed by nitric oxide synthase (NOS) which is NADPH-dependent enzyme [36, 37]. There are three isoforms of NOS: neuronal (nNOS) endothelial (eNOS) and inducible (iNOS) and it is known to be present in every cell component [17, 38]. NO is an uncharged lipophilic molecule containing unpaired electron. Although NO is not a highly reactive radical, it is important in that it can form other reactive intermediates that have an impact on protein function and the function of all organisms, as well as trigger nitrosative damage in biomolecules [39]. Therefore; it can function as an antioxidant or as an oxidant. NO, blood pressure regulator and a neurotransmitter, can produce powerful oxidants during pathological conditions [28].
The interaction of excessive amounts of O2−• anion with NO leads to the formation of the peroxynitrite anion (ONOO−). ONOO−, a cytotoxic radical, causes tissue damage and oxidizes low-density lipoproteins (LDL) [4, 40, 41]. It can also directly cause protein oxidation and DNA oxidation. ONOO− can form prooxidant nitrogen dioxide (NO2) and •OH by self-decomposition [42]. It is suggested that NO can increase the production of reactive oxygen and nitrogen species and inhibit cytochrome C oxidase in mitochondria, which can alter the activity of various processes such as respiration, mitochondrial biogenesis and oxidative stress [37]. It plays a critical role in inflammation-related carcinogenesis by activating the redox-sensitive transcription factor with nitrosative stress caused by NO, which has an important regulatory role for cellular functions. It is stated that by increasing the level of NO in plasma, it can reduce the concentration of uric acid and ascorbic acid and cause lipid peroxidation [28].
Reactive oxygen species, produced in mitochondria and extramitochondrial regions, react with polyunsaturated fatty acids (PUFA) found in complex lipids and lipoproteins, such as phospholipids found in cellular membranes, which are highly sensitive to oxidative changes. The process that causes degradation of PUFAs by chemically modified by ROS is called lipid peroxidation [43].
Lipid peroxidation in membranes is initiated by the contribution of ROS or separation of the hydrogen atom by ROS from the methylene group located between two double bonds in the PUFA. Conjugated dienes made up of PUFA react with oxygen present in the membranes at a very high rate and form a peroxyl radical (ROO•). Since ROO• radicals are particularly highly reactive to neighboring PUFA chains, they spread the lipid peroxidation process by removing hydrogen from them. In this reaction, carbon centred radicals and lipid hydroperoxide are formed. Lipid peroxides can react with transition metal ions (iron, copper ions) to form alkoxyl radicals (RO•) [4, 44]. Metal ions can cause the lipid peroxide molecule to become unstable, leading to its degradation into smaller products. These products range from simple hydrocarbons to various ketones and aldehydes. The decomposition products of lipid peroxides are aldehydes such as malondialdehyde (MDA), acrolein, 4-hydroxy-2-hexenal (HHE) and 4-hydroxy-2-nonenal (HNE) [43, 45]. Commonly used lipid peroxidation markers are MDA and HNE. HNE is formed as a peroxidation product of omega-6 unsaturated fatty acids, while MDA is essentially a PUFA peroxidation product with more than two double bonds such as arachidonic acid [4].
Biomolecules undergo a lipoxidation reaction by lipid peroxidation end products such as MDA, 4-HNE and acrolein. Irreversible nonenzymatic modifications occur when these products react with lysyl (ε-NH2), histidyl (imidazole) and cysteinyl (-SH) groups in the polypeptide chain. MDA-lysine and HNE-protein compounds formed by lipoxidation are called advanced lipoxidation end-products (ALE) [46, 47, 48].
Antioxidants, when present in low concentrations, are generally defined as substances that significantly inhibit or delay oxidative processes while they oxidize themselves, in relation to oxidizable substrates [49]. They neutralize free radicals and oxidize themselves by accepting highly reactive unpaired electrons [4]. Various transcription factors in the human body are activated or inhibited depending on the relative oxidant/antioxidant ratio. Thus, many signal paths are controlled by redox balance. The endogenous defense system consists of antioxidant compounds and specific enzymes that catalyze their antioxidant activities. There are a wide variety of powerful antioxidants that cells use, such as vitamins (C, E, A) and enzymes (CAT, GPx, SOD and thioredoxin reductase). Other non-enzymatic antioxidants available to cells include GSH, α-lipoic acid, taurine and coenzyme Q10, carotenoids and polyphenols. Especially GSH and taurine, which are thiol antioxidants, are of great importance in maintaining the redox balance [50, 51, 52, 53].
Thiols are biological mercaptans (R-SH), while biological mercaptans are called biothiols. Biothiols can be classified as low molecular weight free thiols and large molecular weight protein thiols. Thiols found in biological systems play a role in the coordination of antioxidant defense systems [54]. It contains protein thiols in plasma, protein sulfhydryl groups and protein mix disulphides consisting of cysteine, cysteinylglycine, homocysteine and GSH. These thiols are also available in the form of low molecular mass disulphides, homocystine, cystinylglycine, cystine and GSSG [19]. While GSH/GSSG, especially in reduced form, consists of the low molecular weight sulfhydryl/disulphide pool inside the cell, cysteine/cystine in the form of disulphide in plasma and outside the cell as a whole [55]. It has been reported that dynamic thiol disulphide balance plays a crucial role in antioxidant system [20]. Total thiol (TT), especially protein thiol (-SH) groups in the body are considered as the main plasma antioxidants of the living organism. Most of these thiol (-SH) groups are found in albumin and constitute the major reducing groups found in body fluids [56].
Thiols play important physiological roles in processes requiring sulfur and are highly reactive, the -SH groups are readily oxidized or reduced in the presence of a catalyst [57, 58, 59]. Thiols can act as electron acceptors, reducing unstable free radicals by oxidizing, so they are powerful antioxidants. Despite their high reactivity, thiols’ antioxidant potential depends on environmental, structural and catalytic factors [60, 61, 62].
Cysteine can be synthesized endogenously from methionine. Methionine, an essential amino acid in the diet, is endogenously metabolized to homocysteine and then to cysteine; Its conversion is rate limited by a few enzymes [63]. As an amino acid, cysteine has important structural roles and can bind thiol side chains to metals such as zinc, copper and iron, which are crucial for enzymatic functions. The thiol side chain of cysteine also allows it to be included in the tri-peptide thiol antioxidant GSH. Besides, cysteine metabolism through the cysteine-sulfinic acid pathway can generate taurine, although enzymatically the rate is limited, this pathway is much more complex than that of GSH [64, 65]. Both GSH and taurine are formed from cysteine with bioactive thiol groups. Although intermediate levels of cysteine are important for cellular signaling pathways, high plasma levels have been associated with cardiovascular and neurological diseases [66, 67, 68]. Additionally, high intracellular levels can increase oxidative DNA damage through the Fenton reaction [69].
Thioredoxin (Trx) was first discovered in E.coli in 1964 [70]. Trx’s are proteins that act as regulators in redox reactions and are found in all eukaryotic and prokaryotic organisms [71]. The Cys-Gly-Pro-Cys division is located in its active region [72]. Cytosolic thioredoxin-1 (Trx1) and mitochondrial thioredoxin-2 (Trx2) are part of the thioredoxin system, an essential and important antioxidant system for the maintenance of intracellular redox state, and play an important role in cellular redox balance and normal cell and tumor cell signaling [73, 74]. Trx exerts its antioxidant effects primarily by acting as an electron donor for peroxiredoxins. Trx is a small molecular weight protein that functions as an antioxidant by facilitating the reduction of other proteins containing the thiol (-SH) group via cysteine thiol-disulphide (-S-S-) exchange, and ribonucleotide reductase, an essential enzyme in the replication of deoxyribonucleic acid (DNA) for a hydrogen donor [75].
Thioredoxin reductases (TrxR) is a member of the flavoprotein family of pyridine nucleotide-disulphide oxidoreductases such as glutathione reductase (GSR), lipoamide dehydrogenase, mercury ion reductases [75, 76]. Members of this family include the active site in each monomer comprising the FAD, NADPH binding site and redox-active disulphide. It has a selenocysteine residue in its active site [73]. The disulphides in the active part of the TrxR reduce the substrate by catalyzing the electron transfer from NADPH to FAD. TrxRs reduce the thioredoxin protein containing two different cysteine amino acids (Trx1; Cys32 and Cys35, Trx2; Cys31 and Cys34) in its catalytic region. TrxRs have been reported to be associated with lipoic acid, lipid hydroperoxidase, cytotoxic and antibacterial polypeptide NK-lysin, dehydroascorbic acid, vitamin K, ascorbyl free radical, tumor suppressor protein p53 as well as Trx protein [71, 76, 77, 78, 79, 80]. It has been stated that mammalian thioredoxin reductase has three different isoenzymes, cytosolic TrxR1, mitochondrial TrxR2 and TrxR3, which is specific to testicles containing glutaredoxin region in the N terminal region [81].
Thioredoxin system has various roles in organisms and reflects the importance of the -SH group together with disulphide (-S-S-) in many reactions that are crucial in cell regulation [82]. It was previously thought that Trx was mainly involved in protecting against oxidative stress, scavenging ROS through its interaction with peroxiredoxin and working to control cellular redox balance. As a result of the studies, it has been shown that Trx contributes to redox-dependent cellular processes such as signal transduction, gene expression, apoptosis and cell growth [83, 84]. The reduced Trx binds apoptosis signal kinase-1 (ASK-1) and stops apoptosis [85]. Trx is released in response to oxidative stress and extracellular Trx exerts cytoprotective effects in inflammatory and oxidative conditions [86].
Glutathione (GSH = γ-glutamylcysteinylglycine) is abundant in the human body. It is a tripeptide synthesized from three amino acids (cysteine, glycine and glutamate). It is a low molecular weight intracellular thiol compound and is mostly synthesized in the liver and is found in all cell types. As the regulator of intracellular redox homeostasis, most of it is stored in reduced form in the nucleus, endoplasmic reticulum, and mitochondria. The thiol group (-SH) of glutathione reduces the number of free radicals by binding to the un-shared electrons of free radicals formed as a result of oxidative stress. There are two forms in the organism: reduced (GSH) and oxidized (GSSG). The thiol-containing cysteine molecule in GSH, which is predominantly in the cell, allows ROS to take part in antioxidant roles by taking part in both degradation and removal [87, 88, 89].
The glutathione system acts as a leading cellular defense mechanism against oxidants. GSH is not only a direct ROS scavenger but also an antioxidant that has an important act in the regulation of intracellular redox status. The system consists of GPx, GSR and GSH. GSH retains its antioxidant ability in its reduced form. GPx catalyzes the reduction of H2O2 to water using GSH as a cosubstrate. GSSG is then reduced to GSH by GSR using NADPH. The cycle between these two states aids in free radical and toxic substance metabolism. The GSH/GSSG ratio is considered a sign of the redox state and relative oxidative stress level. The capability of organisms to regenerate GSH (through the synthesis of GSH or through reduction of GSSG) means the cell’s success to withstand oxidative stress [90, 91].
The ability of GSH to act as an antioxidant is due to the thiol-containing cysteine part. GSH is located on both the first and second lines of ROS defense and requires GPx enzymes to catalyze the breakdown of H2O2 through the reduction of GSH to GSSG. GPx (GPx1), selenium-dependent, is found in the kidneys and mitochondria [92, 93]. Four other GSH peroxidases (GPx2-GPx5) have also been discovered, along with evidence of antioxidant properties in vivo [94]. Detoxified metabolites resulting from GPx defense are excreted from the cell via a glutathione S-conjugate transporter [87]. It has been reported that administration of a GSH enzyme inhibitor in rats reduces vitamin C levels in the kidney, liver, brain and lung [95]. It has been noted that GSH administration increases both vitamins C and E [96]. It is stated that vitamin C deficiency significantly decreases GSH levels in the blood [97], while vitamin C supplementation contributes to the formation of GSH [98].
Cysteine can be metabolized to taurine, intracellular sulfonic acid, via cysteine-sulfinic acid. Taurine or 2-aminoethanesulfonic acid is abundant in the human body. Since there is not a carboxyl group in its structure, it is not an amino acid in theory, but it is usually referred to as proteins [99, 100]. As a result of this condition, it is released in the plasma of mammals and inside the cell [101]. Taurine is most often found where reduced O2 molecules are produced and in locations where potentially toxic substances such as xenobiotics, retinoids and bile acids are found [102]. It is also found in high levels in white blood cells and platelets [103].
Although the mechanisms of taurine’s antioxidant effects are not fully explained, possible mechanisms include regeneration of thiol groups, interfering with ROS activity and scavenging ROS [104]. It has been reported that Taurine suppresses superoxide production in mitochondria [105]. In general, taurine causes a significant reduction in ROS formation through its stimulatory effect on SOD, CAT and GPx enzyme activity [106, 107, 108]. Besides, taurine also contributes to the regulation of GSH concentrations [109]. It is thought that taurine has limited or no direct scavenging and reaction ability with ROS, and shows its antioxidant effect by increasing the activities of antioxidant enzymes such as GPx and SOD [110, 111]. It has been recorded that taurine indirectly increases endogenous GSH levels [112]. Studies have shown that taurine supplementation reduces lipid peroxidation and maintains GSH levels [113, 114].
Taurine can also inhibit free radical generation. Taurine’s amino group is the direct scavenger of hypochlorous acid (HOCl) [105]. In the presence of myeloperoxidase, taurine reacts with the acid to form a less toxic oxidant, taurine chloramine (TauCl). Since neutrophils contain high levels of taurine, TauCl formation can continue as long as there is enough taurine [115]. TauCl not only plays a role in antioxidant systems by lowering HOCl levels but also inhibits O2 production and proinflammatory mediators in neutrophils and macrophages [115, 116].
Thiol state and thiol-disulphide balance, which is an antioxidant defense system, may change due to oxidative stress in some diseases that may occur in various systems, organs and tissues in the organism.
In diseases of the digestive system, significant changes are observed in thiol state. For example, ROS formation in the liver increases due to alcohol intake. In this situation, serum protein thiol levels of alcohol drinkers decrease [117, 118]. It has also been determined that the level of thiol in the gallbladder increases in various gastrointestinal diseases [119]. A study showed that serum -SH levels of patients with helicobacter pylorus were significantly decreased [120]. Some studies have shown that native thiol (NT) and total thiol (TT) levels decrease and disulphide levels increase in celiac disease, acute pancreatitis, and inflammatory bowel disease [121, 122, 123]. In addition, the serum free thiol level has determined that non - alcoholic fatty liver disease (NAFLD) is associated with death from all causes in people with suspected NAFLD [124]. Impaired thiol-disulphide homeostasis has been reported in patients with hepatitis-B-induced chronic hepatitis and liver cirrhosis [125]. Again, in liver damage caused by pesticides, the thiol level was decreased, whereas black tea extract was found to improve thiol level in the liver tissue [126]. In experimental gastric damage induced by indomethacin, a non-steroidal anti-inflammatory drug, it was observed that ellagic acid treatment increased GSH levels and played a role in protecting against the harmful effects of indomethacin by reducing oxidative stress [127].
Another situation in which thiol status changes is cardiovascular diseases. For example, in a study in preeclamptic patients characterized by high blood pressure, it was determined that the buffering function of SNO-albumin was impaired in patients in which the thiol of albumin acts as a scavenger for NO [128]. It was also observed that serum NT and TT levels of patients who had a heart attack decreased [129, 130]. In a study, it was determined that the level of mitochondria-specific thioredoxin increased, which increases NO bioavailability and reduces oxidative stress, thus protecting vascular endothelial cell function and preventing the development of atherosclerosis [131]. In rabbits, after experimental ischemia–reperfusion, it has been reported that thiol redox balance is impaired in myocardial cells and this causes abnormalities in cell function [132]. It has been reported that in case of cardiac damage caused by cyclophosphamide, thiol level decreases, but lupeol and its esters increase thiol level [133]. In sheep babesiosis, a tick-borne hemiparasitic disease, the parasite settles in the erythrocytes and causes a decrease in GSH levels in the blood. Therefore, the decrease in GSH levels indicates that excessive amounts of ROS are formed in cells [134].
In Parkinson’s disease, oxidative stress plays an important role in the degeneration of dopaminergic neurons in the substantia nigra (SN) of patients. It was determined that the thiol antioxidant glutathione (GSH) significantly decreased in the neurons present in Substantia nigra and mitochondrial damage occurred as a result of this decrease [135, 136]. It has been observed that plasma GSH, C-SH and CG-SH levels decrease in patients with schizophrenia. However, it has been observed that Curcumin administration caused a significant increase in GSH level [137, 138]. It has been determined that TT and NT concentrations are decreased in Alzheimer’s patients [139]. In the experimental Parkinson model with 6-hydroxydopamine, it was observed that the thiol level in the brain tissue decreased and the application of biarum carduchrum extract increased the thiol level [140]. In another study, hesperidin administration in 6-hydroxydopamine-induced Parkinson’s model was reported to improve thiol level in brain tissue [141].
Studies have shown that thiol status changes in excretory system diseases. A decrease in thiol status has been reported in chronic kidney disease [142, 143]. There was a negative correlation between serum creatine level and protein thiol level. This is an indicator that serum protein thiol level will decrease in case of renal failure [144]. It has been reported that plasma protein thiol level decreases in nephrotic syndrome [145]. In another study, it was revealed that the thiol-sulphide balance decreased and this balance shifted towards disulphide in patients with acute renal failure, and the decrease in total and native thiol concentrations was associated with the severity of the disease [146]. In renal damage induced by dimethylnitrosamine, thiol level in kidney tissue decreased, whereas Simvastatin (SMN) administration improved thiol level in kidney tissue, while Thymoquinone administration was found to have no effect on thiol level [147].
In polycystic ovary syndrome study, it has been observed that native thiol, total thiol, disulphide levels in the ovary tissues of patients with polycystic ovary syndrome do not change compared to the control group [148]. It has been determined that arsenic and imidocarb reduce the total thiol level in the testicular tissue of rats with testicular damage [149]. In a study, it was concluded that chemotherapeutic agents cause ovarian damage in women and that the reduction of thiol level is very important in the mechanism of this damage [150].
In gestational diabetes, it was determined that pregnant women with gestational diabetes have higher disulphide/natural thiol and disulphide/total thiol levels compared to healthy pregnant women [151]. In addition, in a study, in the case of diabetic nephropathy, natural thiol and total thiol levels decreased [152]. In the pathogenesis of diabetic ketoacidosis, thiol/disulphide balance changed in favor of thiol and significant decreases in disulphide level were observed [153]. Diabetic cats have been reported to have lower erythrocyte membrane thiol level than control [154]. It has been determined that thiol/disulphide homeostasis is impaired in obesity [155].
In experimental asthma disease, it was determined that inflammation in the lung tissue of rats with experimental asthma increased and thiol level decreased, On the other hand, it was determined that the application of Hydro-Ethanolic Extract of
A study in Norway shows that thiols play a preventive role against the development of the most common breast, lung, colorectal and prostate cancers [158]. It has been determined that thiol/disulphide homeostasis plays a crucial role in the pathogenesis of cervical cancer [159]. In one study, it was reported that disruption of thiol disulphide balance is likely to contribute to the etiopathogenesis of endometrial cancer [160]. In addition, it has been stated that irregularities in thiol/disulphide homeostasis may act a part in the pathogenesis of gastric cancer, and a higher oxidative stress level may cause advanced disease to become widespread and aggressive [161].
As a result, oxidative stress can cause serious damage to the cell. Thiol is a very important antioxidant in preventing oxidative stress-induced damage and protects the cell against oxidative stress. Glutathione and taurine are among the important thiols. It is observed that thiol status changes in various diseases and thiol/disulphide homeostasis is very important in the pathogenesis of various diseases such as digestive system, respiratory system, reproductive system, urinary system, metabolic diseases and cancer. This also shows that thiol state is very important in the pathogenesis of oxidative stress-mediated diseases. Therefore, it is thought that interventions that can improve thiol status may contribute to the prevention or treatment of oxidative stress-related diseases.
Natural animal surroundings provide a variety of external sensory stimuli. Consequently, the brain must dynamically integrate each presented feature with changes in internal patterns of responses which manifests as a change in an animal’s behavioral state [1, 2]. For instance, many studies suggest that visual processing should be optimized and adapted to the properties of the stimulus. Thus, visual object representation arises from the activation of functional domains in the cerebral cortex that encodes feature-specific information such as orientation, color, and motion direction [3, 4, 5, 6, 7, 8]. Such feature-specific units have specific parallel networks [9] and therefore visual processing is based on the activation of multiple circuits. Many manipulations such as visual adaptation or antidepressant applications such as ketamine can alter the neuron’s inherent proprieties, and this might result in a change in correlated and uncorrelated neural activity through changes in firing rates. The effect of ketamine results in NMDAR (
Plasticity phenomena in the adult cerebral cortex are known to be heavily correlated to the brain’s capacity for recovery after injuries [10, 11, 12, 13], memory storage [14, 15], and learning [16, 17, 18, 19]. In addition, throughout an animal’s life, cortical representations are continuously modified by experience. In experimental animals, alterations in cortical representations appear following manipulations of inputs and depending on the information locally and globally available to the cortical cells [20, 21, 22]. Many investigations show that the properties of visual cortical neurons are not fixed and can be altered in adulthood [20, 23, 24]. This neuroplasticity has been well documented, as a modification that occurs at many levels from system to molecular, going through the network, cellular and synaptic levels. In this chapter, the experimental electrophysiological work was done in the primary visual cortex of adult cat and mouse so that the responses of visual cortical cells as well as the modification of the cell’s output under different manipulations, particularly antidepressant application, was measured. This has made the visual system a preferred field for experimentation and analysis. Investigations suggest that the enormous architecture of the visual cortex is genetically preprogrammed, however, a minor proportion is shaped by experience and subject to the brain’s plasticity.
We do not yet know exactly the ultrastructural connectome of the primary visual cortex and how it processes information. However, there are some general principles of V1 architecture and processing. Visual inputs reach V1 from the lateral geniculate nucleus (LGN). The thalamocortical connections terminate mainly in layer 4 (L4) and less in supra-(L5/6) and infragranular layers (L2/3). This flow of sensory information is common to all the sensory areas. In contrast to this classic scheme, a recent investigation in mouse using an intersectional viral tracing method for ultrastructural connectivity described labeled thalamocortical synapses in all cortical layers with prevalence in L2/3 [25]. The principal vertical flow of information through the cortical layers may be from the granular layer to infragranular (L2/3) to supragranular (L5/6) [26, 27]. Considering that each layer is a level of cortical processing, one might have expected that a proportion of complex cells with larger receptive fields and more complex responses are outside of L4. Hence, at a given stage, each unit is a sampling from a broader input extent, receiving convergent information from the preceding stage, diverging out to the following stage, and in this process, establishing larger and more complex integrated receptive fields, with emerging sharper response properties [28, 29]. In parallel to this vertical flow of information, there is a horizontal connectivity. At each layer, most excitatory projections seem to originate from intra- and interlaminar pyramidal cells. The horizontal connectivity arises from L2/3 and L5 and project to infra- and supragranular levels [30, 31].
The brain processes complex visual information along with different feature aspects, such as orientation, visual motion, color or curvature [32]. Hence, visual inputs are parceled out to different extrastriatal cortical areas for further analysis. The extrastriate visual cortex receives strong direct projections from primary visual cortex which leads to a first-pass computation in the visual processing. The main outputs of V1 are to V2, V3, V4, and V5 (MT). The assumption is that the extrastriate areas which connect with V1 are in lower positions in the processing hierarchy than the extrastriate areas which connect with other extrastriate areas. This idea is superimposed on a recent concept of parallel pathways of visual areas that are implicated in some common dimensions of visual processing, i.e., “what” processing (ventral pathway), or “where” processing (dorsal pathway). From these extrastriate areas, visual inputs are then transferred back by feedback connections to areas V1 and V2 [33]. Visual object recognition depends on developing during processing across a hierarchy of visual areas both selectivity and invariance at each stage. Both simple and complex cells are selective but only complex cells are invariant to a range of object transformations. This invariance allows an object to be recognized even when some of its features (size, orientation, position, etc.) change [34].
In addition to this classical visual cortical hierarchy, it was shown that the stimulus context modulates a cell’s response which suggests the implication of other [33] areas in addition to the higher order of the visual cortical hierarchy [35, 36]. Since a big number of stimuli are present in the visual field at the same time, bottom-up and top-down mechanisms, as visual spatial attention, bias the processing toward a particularly salient stimuli [37].
A key element in the role V1 plays in visual perception is the ability of V1 neurons to integrate information over larger parts of the visual field, since most of them are activated by stimulation of each eye. It was shown that a single oriented bar can induce a V1 neuron to fire. This property of orientation tuning selectivity, first described by Hubel and Wiesel (1968), is an emergent property of V1, seen in an optimal response of a given neuron to a single preferred orientation of the line segment or gratings. Although, orientation selectivity (OS) was shown in retinal ganglion cells, this tuning preference has received much less attention then in the cortex because most retinal ganglion cells are selective only to cardinal orientations: horizontal (pigeon retina) [38], and vertical (rabbit retina) [39]. It was reported that zebrafish retina contains cells with oblique preference in addition to the cardinal types [40].
In addition to the orientation tuning, neurons in primary visual cortex are highly sensitive to other visual stimulus properties such as contrast, the direction of movement, and temporal and spatial frequency. These stimulus properties can interact and influence neuronal responses. For example, it was revealed in ferret visual cortex, that a cell’s orientation-tuning is not affected by contrast level and the temporal-frequency of the visual stimulus. However, direction selectivity decreases, and sometimes reverses, at nonpreferred temporal frequencies [41, 42]. These investigations might support the idea that invariance of OS is a prime aspect of visual processing. However, in the next section, we will see that manipulation and the use of ketamine can alter this intrinsic propriety of V1.
OS is a salient propriety of V1. In anesthetized cats, electrophysiological studies using extracellular recordings of V1 cells reveal that neurons are orientation selective (Figure 1). To study OS of neurons, stimulation can be accomplished using blocks of 25 trials of each of eight black–white oriented sine gratings placed in the cat receptive field and covering a span of 157.5° equally spaced at 22.5° (Figure 1a). Spike sorting method allows the separation of a cell’s spikes from multi-unit activity. First, spike-waveforms have to be verified qualitatively by visual control, then the spike sorting is continued by cluster-isolation using first principal components analyses, autocorrelograms (AG) showing absence of events at 0 s on the time-scale (refractory period), peri-stimulus time histograms, (PSTH) and raster plots (RP), denoting for each trial the cell’s spontaneous activity (before the 0 s: stimulus trigger time) and its response to the stimulus presentation (Figure 1b). Based on the raw data, neurons’ responses are determined using Gaussian function that allows precise determination of the preferred orientation of each isolated neuron [43]. Whereas the strength of the OS can be measured by the orientation selectivity index (OSI), whose value is between 0 (orientation-nonselective) and 1(strongest OS) [44, 45], the sharpness of the tuning curve around its peak is measured by the orientation bandwidth from the Gaussian fit based on the full width at half height [46]. In cats, most V1 cells show a strong OS and sharp tuning curves. It was reported that over 82% of V1 neurons were well-tuned to stimulus orientation [47], and all the orientations were represented covering the full 180° [48]. In cats, V1 neurons with similar OS preferences are assembled in orientation columns. This columnar organization, where all cells through all six cortical layers have the same orientation preference, is a well-known characteristic that is shared by cats with ferrets and primates. Such cortical architecture, suggesting a vertical integration of feature selectivity through V1 layers, could reduce cable length, economizing the volume, and maintenance cost of V1 [49, 50]. OS is embedded in a retinotopic map in which information from neighboring locations in the visual field is coded in neighboring locations in the brain onto a two-dimensional surface that retains the image’s spatial organization. In addition, the cortical organization of cats and primates is known as a pinwheel OS map because different orientations columns are organized radially around a central point (showed by a star in Figure 1a) in the retinotopic map.
Experimental procedures and spike sorting method. (a) V1 stimulation (shown as black and white gratings) and V1 architecture in mouse and cat (shown as cylinders, the black star shows the convergence of different orientations in cat). (b) Spike sorting process on the left for mouse and on the right for cat (from top to bottom): Multiunit activity (MUA), spike wave forms (cyan in mouse and red in cat), principal component analysis of the dissociated waveforms, auto-correlograms, peri-stimulus time histograms, and raster plots for the separated single units.
Unlike cats and primates where the columnar organization is an apparent characteristic of the neocortex, rodents and rabbits have a salt-and-pepper OS map, that is a random distribution of orientation-selective neurons. Hence, cells with different orientation preferences are juxtaposed horizontally across the retinotopic map and vertically through the six cortical layers in a random fashion [51, 52, 53, 54, 55] (Figure 1). Despite the lack of the columnar organization, it was shown, using extracellular recordings, that neurones in V1 of mice are sharply tuned to orientation of drifting gratings but the percentage of orientation-nonselective cells, whose orientation tuning curves were not unimodal, was bigger (63,33% of sorted cells) than in cats (18%) [24, 47]. Therefore, neuronal feature selectivity might be related to the activation of a specific cortical cell’s subtype more than the cortical architecture. Indeed, it was reported that optogenetic activation of parvalbumin-positive (PV+) interneurons in the mouse primary visual cortex (V1), that is, the increase of their firing rate, markedly sharpened OS and enhanced perceptual discrimination of nearby neurons [46]. Even in V1, neurons’ responses are well known for their orientation tuning, the results of a recent study in mice seemed to leave little doubt that, in vision, the prominent role of V1 is encoding simple visual stimuli as oriented bars or gratings. It seems that in addition to a simple discrimination between light and dark oriented bars, V1 is involved in learning processes such as categorizing visual stimuli based on perceptual features, functional (semantic) relations, or a combination of both. Hence, the formation of a neuronal category representation in mice occurs in the first stages of visual information processing in the neocortex together with higher cortical association areas [56]. Despite the notion that the salt-and-pepper map is considered the most likely ancestral state, neurons can maintain high values of OS, and they are involved in complex visual processing, such as categorization. It seems that this organization in rodents was favored by their small brain size, that is in this case, the reduced visual field coverage might outweigh the potential advantage of a pinwheel OS map. However, recent studies show that cortical orientation columns perhaps are miniaturized in mouse V1 since orientation preference maps with pinwheel arrangement comparable to the macaque were described in mouse lemur [49, 57]. Hence, the V1 of rodents might represent micro-scale precursors of primate-type functional orientation columns [57]. It is likely that the relative thickness of cortical layers was a predictor for the functional organization. Indeed, an anatomical study showed that layers 2/3 are thicker in carnivores and primates than in rodents, while layers 5/6 are thicker in rodents than in carnivores and primates. The study exhibited that out of the total cortical thickness on average 44% in primates and 35% on average in carnivores were occupied by layers 2/3, but only 26% on average in rodents. In contrast, 34% of the total cortical thickness in primates and 39% in carnivores were occupied by layers 5/6, but 54% in rodents [49] . These anatomical differences between these species might affect intralaminar and cross-laminar networks and the visual cortex organization which evolved to be different in rodents versus primates and carnivores. The question that arises is whether the mechanisms of cortical plasticity, which operate at the level of single cells and the network are similar in mice and cats’ V1, and so independent of the presence of columnar organization. In the next section, we will try to investigate the effect of ketamine on the OS and the synaptic weight between cells in V1 in cats and mice.
Antidepressant drugs are often used to treat mental and affective disorders such as maladaptive responses to stress. Although the drugs have different mechanisms of action, the “monoaminergic hypothesis” is commonly accepted to underline the antidepressant effect [58]. Ketamine is a rapidly-acting antidepressant, and its effect is profound and sustainable [59, 60]. It is used for treatment-resistant symptoms of mood disorders in patients who are resistant to typical antidepressants [45, 59, 61]. Ketamine is a blocker of glutamatergic NMDAR (N-methyl-D-aspartate receptor) activity as it acts as a non-competitive antagonist. Many findings reveal that ketamine, in addition to its antidepressant effect, induces visual cortical plasticity. It was shown, in adult mouse, that single-dose ketamine promotes functional recovery of visual acuity from amblyopia [62]. Another investigation provided evidence that ketamine enhanced visual sensory-evoked Long-Term Potentiation (LTP) in depressive patients [63]. By contrast, other investigations showed that ketamine altered or blocked some visual processing and disturbed cortical plasticity. For example, it was reported that ketamine blocked the induction of LTP in layer 2/3 of the adult rat visual cortex in vitro [64]. In addition, in kitten, it prevented the ocular dominance shift toward the open eye which suggests a retrograde effect on cortical plasticity [65]. Moreover, in humans, ketamine interfering with top-down processes distorted object recognition [66], and it altered the neuronal processing of facial emotion recognition due to the reduced activity in visual brain regions involved in emotion processing [67]. The effect of ketamine on the brain remains uncertain and sometimes contradictory according to investigations. This might be due to several variables such as the region of interest in the brain, the dose administrated, the administration mode (local, intraveinal, acute, or chronic, etc.) or the animal model. The effect of ketamine on the OS of V1 cells was tested in cat and mice and is explained in the next section.
To examine the impact of the antidepressant on the orientation preferences of V1 cells, the drug can be applied locally over the animal’s cortex. Ketamine application can be executed using a strip of filter paper (1 × 1 mm) impregnated with the drug (10 mM) and placed next to the recording sites. Test orientations can be presented, and recordings can be performed in the control conditions and ten minutes after ketamine administration [68]. As a result, cortical neurons selectively responding to the exposed orientations were altered by ketamine in that the cells acquired a new preference and showed a shift in the peak of their tuning curve. Based on the simulation results, we obtained evidence that ketamine induced orientation plasticity in mice (Figure 2a) and cat V1. It is shown that the ketamine effect on V1 cells is local since it does not exceed 0.7 mm, and transient since a recovery state was observed [68]. The question is whether the observed changes of the cells’ tuning properties were observed after visual adaptation, that is, could ketamine alter the adaptation effects? To implement adaptation, an imposed orientation can be exposed for several minutes. Results showed that restricted exposure of V1 cells to vertical orientation (90°) for 12 minutes shifted their original preferred orientations toward the exposed orientation (attractive shift). Contrarily, the tuning curve peaks of a few cells shifted away from the original preferred orientation (repulsive shift). Dual mechanisms have been proposed for repulsive and attractive shifts in cat. While the repulsive shift results in a decrease of excitation at the adapted flank of the tuning curve, the attractive shift is the result of the parallel facilitation of responses on the adapted flank and a depression on the opposite flank [69]. This effect of adaptation is known as a push–pull mechanism [69, 70]. In cats, Dragoi et al. [23] reported larger repulsive shifts near the pinwheels of orientation maps than in an iso-orientation domain in cats. This systematic change in V1 was attributed to a higher degree of plasticity near pinwheels because of the convergence of a broad spectrum of orientation inputs [23]. Comparing the cells’ orientation preferences in control, post-adaptation, and post-ketamine, the collected data showed that ketamine abolished the adaptation effects, that it changes the new preferred orientation. Apart from this general effect, electrophysiological studies reveal a more varied scenario. Indeed, the effect of ketamine categorizes cells into two groups according to the amplitude of the adaptation-induced shift: for cells exhibiting large shifts (superior to 24°), ketamine decreases the post-adaptation shift amplitude in that it alters their new preferred orientations toward the original preference, but for cells exhibiting small shifts (inferior to 24°), ketamine increases the post-adaptation shifts. Thus, while ketamine facilitates the cell’s recovery for large shifts, it potentiates the small shifts (Figure 2b). This might suggest that ketamine application leads to weakening or amplifying the adaptation effects according to the amplitude of the adaptation-induced shift.
Effect of ketamine on orientation selectivity in the mouse. (a) The control preferred orientation of cells changes after ketamine application. (b) The effect of ketamine on post-adaptation preferred orientation depends on the post-adaptation shifts. Shifts inferior to 24° are amplified under ketamine while shifts superior to 24° are reduced, that is, ketamine favors cells’ recovery.
Because the results are similar in mouse and cat, we assumed that the mechanisms of cortical plasticity induced by ketamine, which operate at the level of single cells, are similar, independent of the presence of columnar organization.
Cross-correlogram (CCG) analysis is an efficient tool to reveal the putative functional coupling between neurons that display time relationships between their respective spike trains [71, 72, 73, 74, 75]. The stimulus-dependent synchrony should be suppressed in the shift-corrected cross-correlation histograms [76]; this allowed the measurement of synchrony excluding latencies evoked by stimuli onset. The CCG is performed between simultaneously recorded spike trains of two neurons where one cell is set as reference and the second as target. In CCGs, the time axis (X axis) is divided into bins of 1 ms and the
where
In cat and mouse, CCG analysis performed before and following ketamine application shows that this drug alters the putative synaptic links between neurons following visual adaptation. Thus, ketamine modulates the neuronal assembly by strengthening or weakening synaptic weight and/or adding new cells to connectomes (Figure 3c). The redistribution of synaptic weights between neurons after ketamine application suggests a reassignment of functions of each neuron pair inside the microcircuits. Ketamine not only enables altering the original network but also the post-adaptation microcircuits. This implies that when a single unit changes its selectivity after experience-dependent plasticity, its wiring changes according to its new preferred orientation (Figure 3c and d).
Ketamine might disturb cells’ activity which in turn redeploys the strength of projections between cells to restructure the entire wiring-dynamic of the neuronal assembly. We conclude that, despite the organizational difference between mouse and cat, ketamine remaps the connectivity of visual cortex microcircuits, and leads to a new configuration of the functional networks.
In this section, the network-dynamics of the assembly are related to the orientation changes in each condition (control, post-adaptation, post-ketamine). Thus, we investigated whether the strength of connections between units in an assembly is related to stimulus orientation. Results, in cat and mouse, show a unique network was activated at every orientation whatever the condition. Therefore, feature-specific connectivity was generated for each input stimulus. Thus, connections are activated or deactivated depending on the feature stimulus. Figure 3c-e illustrates the dynamic interactions between neurons within an assembly in response to different orientations in cat and mouse. In short, in mouse, as shown in Figure 3d, some connections were largely maintained despite the change in orientation, whereas, and independently of the condition, other links emerged specifically for some orientations (e.g., unit (e)—unit (c) at 67.5°). The connection disclosed between (f) and (d) units at 0° disappeared at other grating orientations. Furthermore, some connections were characterized by a change in their peak-strength (p) from one orientation to another as depicted by the changing colors in the connectivity matrices (Figure 3d) and the weights numbers over connecting lines (Figure 3e). For instance, the connection between unit (a) and unit (b) (p = 3.5% at 45°) weakens (p = 1.4% at 67.5°) as shown in Figure 3e.
Cell assembly dynamics. (a) The functional network between a reference cell (green) and a target cell (orange on the left and cyan on the right) revealed by CCG analysis. (b) Neuronal synchrony revealed by a significant bin within the time window −1 to +1 ms adjoining the central zero point. In (a) and (b) the confidence limit is shown by the red curved line. (c and d) Strength matrices of a cells (6 × 6 cells simultaneously) in mouse, at all the tested gratings and in all conditions: Control (C), and post-ketamine (K) in c, and control (C), post-adaptation (a), and post-ketamine (K) in d. the colored scale (to the right) represents normalized peaks-strengths of connections. (e and f) Functional network between neurons according to the presented orientation in mouse (e) and in cat (f). The number above the black line indicates the probability of the connection between two units. For cat, cells were simultaneously recorded from two layers (L2/3) and (L5/6) separated in the scheme by the interrupted black line.
Similarly, in cat, some links were maintained at all presented orientations, implying the stability of distinctive connections between specific neurons (dark and light gray units), others were activated (black cell—light gray cell at 0°) or deactivated only at some orientations (the connectivity between dark gray cell—white cell disappeared at 45°, 67.5° and 90° (Figure 3f). All previous examples were drawn from the control condition. However, similar results were observed following adaptation and ketamine, depending on the orientation applied. We conclude that the functional links between pairs at a particular orientation (here 0°) show a unique network activated by a particular condition. Thus, adaptation changes the initial network and induces a new one; in addition, these cellular relationship modifications occur in both supra- and infra-granular layers (separated by the dotted horizontal black lines). This network acquired following adaptation was modified after ketamine application and a new pattern of connections emerges. It is worth mentioning that the effect of ketamine on the network dynamics is reversible since after recovery the connections between reference and targets return to the original pattern.
The change in the probabilities of connection (p) from one grating to another reflects a modification of synaptic weights between neurons in the assembly [78], wherein new neurons join and others leave in relation to the presented orientation. Accordingly, the unit output is the result of synaptic weights distributed over its dendritic tree for each grating. It was reported that within a cell-assembly, some connections are weak, therefore their feeble activation might confer flexibility to the assembly as the stimulus changes [79]. Thus, in the cortex, the functional units are neuronal ensembles rather than individual cells [80] and because of the synaptic flexibility of these neuronal groups, a dynamic salient microcircuit is involved for each visual stimulus. In line with a previous report [81], the encoding sensory stimuli might require a coordinated activity of specific groups of neurons that represent the building block of visual processing. Conclusively, all the above findings imply that the flexibility of the neuronal circuit keeps it permanently ready to receive the input efficiently and that the output is related to the assembly organization. In mouse, the proximity of neurons with different orientation preferences (salt-and-pepper organization) may favor each orientation grating, the activation of a specific group of synapses, and thus the emergence of a specific functional microcircuit. It is worth noting the activation of a specific functional network between co-active neurons as the orientation changes is a general property of stimulus processing that would be applicable to all mammals. It must be underlined that connectivity weights are independent of firing rates [79].
To investigate the effect of ketamine on the pair-wise synchrony, a computation of the number of connections and the CCG magnitudes of all summed pairs was performed at all presented orientations and compared between control, post-adaptation, and post-ketamine conditions. Results show that, contrasting with adaptation, under ketamine, the magnitude and the number of synchronous inputs was increased in cat but not in mouse. This increase might reflect a more coordinate activity of the recipient units with each other [82], which might lead to expand and upgrade the cortical processing and thus more efficient information transfer. Synchrony is energy demanding. Indeed, neuronal synchrony requires resources to time firing initiation accurately, aligned anatomical pathways to transfer the spikes, and energy expenditures for redundant action potentials [83]. Since in biological systems, the costs should not outweigh benefits, these energy costs should be counterbalanced by an information rate increase and more efficient information transfer. Moreover, it has been shown previously that in addition to the firing rate, the precise timing of firing potentially encoded visual information (the visual information is encoded in temporal patterns of firing) [84, 85, 86]. It seems that columnar, and not salt-pepper organization where cells with different orientation preferences are locally intermixed, favors the pair-wise synchrony. In the cat visual cortex, neurons with similar features are clustered together, forming columns, and are likely to be interconnected [78, 87, 88]. Thus, it is more likely to encounter close neurons with similar tuning then in mouse and this organization favors synchronization since it was shown that the latter is due in part to specific horizontal connections between cortical domains having similar tuning properties. Indeed, it was reported that cells exhibiting similar orientation preference showed a significant pair-wise synchrony [89].
Antidepressants, in particular ketamine, influence neurotransmission since it blocks NMDAR activity. Investigators have made many important strides toward understanding the molecular mechanisms governing the induction of plasticity by ketamine in stimulus processing.
It was reported that excitation (
In the primary cortical areas, cells are fed by the feedforward thalamic drive while their intrinsic properties are further shaped through the local recurrent network. The most striking effects of ketamine are the imposition of new intrinsic properties of individual neurons and the abolition of adaptation effects. The core of the representational question is whether the changes in synaptic strengths, under ketamine, constitute an engram of a new encoding of inputs in the visual processing. Experimental findings show that in parallel to tuning shifts of V1 orientation-selective cells, ketamine reorganizes the connectomes, that is, cells modifying their synaptic weight, and therefore a change of the synaptic links between units was observed. These results might implicitly provide that synaptic rewiring plasticity underlies cortical map reorganization and that the modification of a cell’s selectivity by ketamine may be better viewed in relationship to neuronal connections. In the cat primary visual cortex, it was reported that long-range horizontal axons preferentially bind to distant columns of similar tuning preferences which favors synchrony of cells’ activity under ketamine. This could suggest that ketamine through activity-dependent synaptic plasticity can redistribute connections to preferentially link neurons with similar response properties.
We acknowledge the Conseil de Recherche en Sciences Naturelles et en Genie du Canada (CRSNG) to support the completion of this study and Steve Itaya for his comments on the early version of the manuscript.
Authors declare that they have no conflict of interest
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Electrochemical impedance spectroscopy showed for coated samples a high corrosion resistance of up to 50 GΩ cm2 and durability >18 months in saline solution. Further improvement of corrosion resistance, thermal and mechanical stability was achieved by incorporation of lignin, carbon nanotubes, and graphene oxide into PMMA-silica matrix, and a self-healing effect was observed after Ce(IV) addition. The results are compared and discussed with those recently reported for a variety of hybrid coatings.",book:{id:"5827",slug:"new-technologies-in-protective-coatings",title:"New Technologies in Protective Coatings",fullTitle:"New Technologies in Protective Coatings"},signatures:"Samarah V. Harb, Andressa Trentin, Ruben F. O. Torrico, Sandra H.\nPulcinelli, Celso V. 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Reaction-to-fire and/or resistance-to-fire are to be considered for assessing both flammable and non-flammable material by using fire retardant and fire resistant or fire protective coatings. The degree of fire retardation mainly depends on the coating thickness, substrates, and efficiency of formulations. This chapter explains briefly the fire retardation of wood by using fire retardant coatings.",book:{id:"5827",slug:"new-technologies-in-protective-coatings",title:"New Technologies in Protective Coatings",fullTitle:"New Technologies in Protective Coatings"},signatures:"Thirumal Mariappan",authors:[{id:"198114",title:"Dr.",name:"Thirumal",middleName:null,surname:"Mariappan",slug:"thirumal-mariappan",fullName:"Thirumal Mariappan"}]},{id:"29757",doi:"10.5772/30010",title:"Ceramic Coatings for Pigments",slug:"ceramic-coatings-for-pigments",totalDownloads:4514,totalCrossrefCites:6,totalDimensionsCites:8,abstract:null,book:{id:"588",slug:"ceramic-coatings-applications-in-engineering",title:"Ceramic Coatings",fullTitle:"Ceramic Coatings - Applications in Engineering"},signatures:"A.R. 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Reaction-to-fire and/or resistance-to-fire are to be considered for assessing both flammable and non-flammable material by using fire retardant and fire resistant or fire protective coatings. The degree of fire retardation mainly depends on the coating thickness, substrates, and efficiency of formulations. This chapter explains briefly the fire retardation of wood by using fire retardant coatings.",book:{id:"5827",slug:"new-technologies-in-protective-coatings",title:"New Technologies in Protective Coatings",fullTitle:"New Technologies in Protective Coatings"},signatures:"Thirumal Mariappan",authors:[{id:"198114",title:"Dr.",name:"Thirumal",middleName:null,surname:"Mariappan",slug:"thirumal-mariappan",fullName:"Thirumal Mariappan"}]},{id:"54658",title:"Organic-Inorganic Hybrid Coatings for Corrosion Protection of Metallic Surfaces",slug:"organic-inorganic-hybrid-coatings-for-corrosion-protection-of-metallic-surfaces",totalDownloads:2777,totalCrossrefCites:5,totalDimensionsCites:16,abstract:"A variety of organic-inorganic hybrids have been designed to act as anticorrosive coatings of metallic substrates. Among them, epoxy-silica and poly(methyl methacrylate) (PMMA)- silica hybrids, prepared by the sol-gel process and deposited onto steel or aluminum alloys, have demonstrated high anticorrosive efficiency combined with high thermal and mechanical resistance. Lignin, carbon nanotubes, and graphene oxide have been incorporated into PMMA-silica hybrids as reinforcement agents, and cerium (IV) as corrosion inhibitor. Both hybrids were characterized in terms of their structural and thermal characteristics using different pectroscopies, microscopies and thermogravimetric analysis. Both hybrids present homogeneous nanostructure composed of highly condensed silica nanodomains covalently bonded to the polymeric phase. The transparent coatings with a thickness of 2–7 μm have low surface roughness, high adhesion to metallic substrates, elevated thermal stability, and excellent barrier behavior. Electrochemical impedance spectroscopy showed for coated samples a high corrosion resistance of up to 50 GΩ cm2 and durability >18 months in saline solution. Further improvement of corrosion resistance, thermal and mechanical stability was achieved by incorporation of lignin, carbon nanotubes, and graphene oxide into PMMA-silica matrix, and a self-healing effect was observed after Ce(IV) addition. The results are compared and discussed with those recently reported for a variety of hybrid coatings.",book:{id:"5827",slug:"new-technologies-in-protective-coatings",title:"New Technologies in Protective Coatings",fullTitle:"New Technologies in Protective Coatings"},signatures:"Samarah V. Harb, Andressa Trentin, Ruben F. O. Torrico, Sandra H.\nPulcinelli, Celso V. Santilli and Peter Hammer",authors:[{id:"96950",title:"Dr.",name:"Peter",middleName:null,surname:"Hammer",slug:"peter-hammer",fullName:"Peter Hammer"}]},{id:"55381",title:"Protective Coatings for Low-Cost Bipolar Plates and Current Collectors of Proton Exchange Membrane Electrolyzers for Large Scale Energy Storage from Renewables",slug:"protective-coatings-for-low-cost-bipolar-plates-and-current-collectors-of-proton-exchange-membrane-e",totalDownloads:2136,totalCrossrefCites:1,totalDimensionsCites:5,abstract:"Hydrogen produced by proton exchange membrane (PEM) electrolysis technology is a promising solution for energy storage, integration of renewables, and power grid stabilization for a cross-sectoral green energy chain. The most expensive components of the PEM electrolyzer stack are the bipolar plates (BPPs) and porous transport layers (PTLs), depending on the design. The high cost is due to the fact that the employed materials need to withstand corrosion at 2 V in acidic environment. Currently, only titanium is the material of choice for the anode side. We use vacuum plasma spraying (VPS) technology to apply highly stable coatings of titanium and niobium to protect stainless steel BPPs from the oxidative conditions on the anode side. The latter is able to decrease the interfacial contact resistance and improves the long-term stability of the electrolyzer. Furthermore, porous transport layers (PTL) can be realized by VPS as well. These coatings can be produced on existing titanium current collectors acting as macro porous layers (MPL). Lastly, free standing multifunctional structures with optimized tortuosity, capillary pressure and gradient porosity are used as current collectors. The coatings and porous structures developed by VPS enable the reduction of the required material and costs without performance losses.",book:{id:"5827",slug:"new-technologies-in-protective-coatings",title:"New Technologies in Protective Coatings",fullTitle:"New Technologies in Protective Coatings"},signatures:"Philipp Lettenmeier, Aldo S. Gago and K. 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Biochemistry examines macromolecules - proteins, nucleic acids, carbohydrates, and lipids – and their building blocks, structures, functions, and interactions. Much of biochemistry is devoted to enzymes, proteins that catalyze chemical reactions, enzyme structures, mechanisms of action and their roles within cells. Biochemistry also studies small signaling molecules, coenzymes, inhibitors, vitamins, and hormones, which play roles in life processes. Biochemical experimentation, besides coopting classical chemistry methods, e.g., chromatography, adopted new techniques, e.g., X-ray diffraction, electron microscopy, NMR, radioisotopes, and developed sophisticated microbial genetic tools, e.g., auxotroph mutants and their revertants, fermentation, etc. More recently, biochemistry embraced the ‘big data’ omics systems. Initial biochemical studies have been exclusively analytic: dissecting, purifying, and examining individual components of a biological system; in the apt words of Efraim Racker (1913 –1991), “Don’t waste clean thinking on dirty enzymes.” Today, however, biochemistry is becoming more agglomerative and comprehensive, setting out to integrate and describe entirely particular biological systems. The ‘big data’ metabolomics can define the complement of small molecules, e.g., in a soil or biofilm sample; proteomics can distinguish all the comprising proteins, e.g., serum; metagenomics can identify all the genes in a complex environment, e.g., the bovine rumen. This Biochemistry Series will address the current research on biomolecules and the emerging trends with great promise.",coverUrl:"https://cdn.intechopen.com/series/covers/11.jpg",latestPublicationDate:"May 26th, 2022",hasOnlineFirst:!0,numberOfPublishedBooks:27,editor:{id:"31610",title:"Dr.",name:"Miroslav",middleName:null,surname:"Blumenberg",slug:"miroslav-blumenberg",fullName:"Miroslav Blumenberg",profilePictureURL:"https://mts.intechopen.com/storage/users/31610/images/system/31610.jpg",biography:"Miroslav Blumenberg, Ph.D., was born in Subotica and received his BSc in Belgrade, Yugoslavia. He completed his Ph.D. at MIT in Organic Chemistry; he followed up his Ph.D. with two postdoctoral study periods at Stanford University. Since 1983, he has been a faculty member of the RO Perelman Department of Dermatology, NYU School of Medicine, where he is codirector of a training grant in cutaneous biology. Dr. Blumenberg’s research is focused on the epidermis, expression of keratin genes, transcription profiling, keratinocyte differentiation, inflammatory diseases and cancers, and most recently the effects of the microbiome on the skin. He has published more than 100 peer-reviewed research articles and graduated numerous Ph.D. and postdoctoral students.",institutionString:null,institution:{name:"New York University Langone Medical Center",institutionURL:null,country:{name:"United States of America"}}},editorTwo:null,editorThree:null},subseries:{paginationCount:4,paginationItems:[{id:"14",title:"Cell and Molecular Biology",coverUrl:"https://cdn.intechopen.com/series_topics/covers/14.jpg",isOpenForSubmission:!0,editor:{id:"165627",title:"Dr.",name:"Rosa María",middleName:null,surname:"Martínez-Espinosa",slug:"rosa-maria-martinez-espinosa",fullName:"Rosa María Martínez-Espinosa",profilePictureURL:"https://mts.intechopen.com/storage/users/165627/images/system/165627.jpeg",biography:"Dr. Rosa María Martínez-Espinosa has been a Spanish Full Professor since 2020 (Biochemistry and Molecular Biology) and is currently Vice-President of International Relations and Cooperation development and leader of the research group 'Applied Biochemistry” (University of Alicante, Spain). Other positions she has held at the university include Vice-Dean of Master Programs, Vice-Dean of the Degree in Biology and Vice-Dean for Mobility and Enterprise and Engagement at the Faculty of Science (University of Alicante). She received her Bachelor in Biology in 1998 (University of Alicante) and her PhD in 2003 (Biochemistry, University of Alicante). She undertook post-doctoral research at the University of East Anglia (Norwich, U.K. 2004-2005; 2007-2008).\nHer multidisciplinary research focuses on investigating archaea and their potential applications in biotechnology. She has an H-index of 21. She has authored one patent and has published more than 70 indexed papers and around 60 book chapters.\nShe has contributed to more than 150 national and international meetings during the last 15 years. Her research interests include archaea metabolism, enzymes purification and characterization, gene regulation, carotenoids and bioplastics production, antioxidant\ncompounds, waste water treatments, and brines bioremediation.\nRosa María’s other roles include editorial board member for several journals related\nto biochemistry, reviewer for more than 60 journals (biochemistry, molecular biology, biotechnology, chemistry and microbiology) and president of several organizing committees in international meetings related to the N-cycle or respiratory processes.",institutionString:null,institution:{name:"University of Alicante",institutionURL:null,country:{name:"Spain"}}},editorTwo:null,editorThree:null},{id:"15",title:"Chemical Biology",coverUrl:"https://cdn.intechopen.com/series_topics/covers/15.jpg",isOpenForSubmission:!0,editor:{id:"441442",title:"Dr.",name:"Şükrü",middleName:null,surname:"Beydemir",slug:"sukru-beydemir",fullName:"Şükrü Beydemir",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0033Y00003GsUoIQAV/Profile_Picture_1634557147521",biography:"Dr. Şükrü Beydemir obtained a BSc in Chemistry in 1995 from Yüzüncü Yıl University, MSc in Biochemistry in 1998, and PhD in Biochemistry in 2002 from Atatürk University, Turkey. He performed post-doctoral studies at Max-Planck Institute, Germany, and University of Florence, Italy in addition to making several scientific visits abroad. He currently works as a Full Professor of Biochemistry in the Faculty of Pharmacy, Anadolu University, Turkey. Dr. Beydemir has published over a hundred scientific papers spanning protein biochemistry, enzymology and medicinal chemistry, reviews, book chapters and presented several conferences to scientists worldwide. He has received numerous publication awards from various international scientific councils. He serves in the Editorial Board of several international journals. 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He is a member of the Turkish Biochemical Society, American Chemical Society, and German Genetics society. Dr. Ekinci published around ninety scientific papers, reviews and book chapters, and presented several conferences to scientists. He has received numerous publication awards from several scientific councils. 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He worked on the structure-function relationships of glycoconjugates and his main project was the investigations on the biological roles of the de-N-glycosylation enzymes (Endo-N-acetyl-β-D-glucosaminidase and peptide-N4-(N-acetyl-β-glucosaminyl) asparagine amidase). From 2002 he contributes to the understanding of the Blood-brain barrier functioning using proteomics approaches. He has published more than 70 papers. 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Since then, he has been working as an Adjunct Professor in the same Department at the University of Pavia. His research activity during the first years was primarily focused on the purification and structural characterization of enzymes from animal and plant sources. During this period, Prof. Iadarola familiarized himself with the conventional techniques used in column chromatography, spectrophotometry, manual Edman degradation, and electrophoresis). Since 1995, he has been working on: i) the determination in biological fluids (serum, urine, bronchoalveolar lavage, sputum) of proteolytic activities involved in the degradation processes of connective tissue matrix, and ii) on the identification of biological markers of lung diseases. In this context, he has developed and validated new methodologies (e.g., Capillary Electrophoresis coupled to Laser-Induced Fluorescence, CE-LIF) whose application enabled him to determine both the amounts of biochemical markers (Desmosines) in urine/serum of patients affected by Chronic Obstructive Pulmonary Disease (COPD) and the activity of proteolytic enzymes (Human Neutrophil Elastase, Cathepsin G, Pseudomonas aeruginosa elastase) in sputa of these patients. More recently, Prof. Iadarola was involved in developing techniques such as two-dimensional electrophoresis coupled to liquid chromatography/mass spectrometry (2DE-LC/MS) for the proteomic analysis of biological fluids aimed at the identification of potential biomarkers of different lung diseases. He is the author of about 150 publications (According to Scopus: H-Index: 23; Total citations: 1568- According to WOS: H-Index: 20; Total Citations: 1296) of peer-reviewed international journals. He is a Consultant Reviewer for several journals, including the Journal of Chromatography A, Journal of Chromatography B, Plos ONE, Proteomes, International Journal of Molecular Science, Biotech, Electrophoresis, and others. He is also Associate Editor of Biotech.",institutionString:null,institution:{name:"University of Pavia",institutionURL:null,country:{name:"Italy"}}},editorTwo:{id:"201414",title:"Dr.",name:"Simona",middleName:null,surname:"Viglio",slug:"simona-viglio",fullName:"Simona Viglio",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bRKDHQA4/Profile_Picture_1630402531487",biography:"Simona Viglio is an Associate Professor of Biochemistry at the Department of Molecular Medicine at the University of Pavia. She has been working since 1995 on the determination of proteolytic enzymes involved in the degradation process of connective tissue matrix and on the identification of biological markers of lung diseases. She gained considerable experience in developing and validating new methodologies whose applications allowed her to determine both the amount of biomarkers (Desmosine and Isodesmosine) in the urine of patients affected by COPD, and the activity of proteolytic enzymes (HNE, Cathepsin G, Pseudomonas aeruginosa elastase) in the sputa of these patients. Simona Viglio was also involved in research dealing with the supplementation of amino acids in patients with brain injury and chronic heart failure. She is presently engaged in the development of 2-DE and LC-MS techniques for the study of proteomics in biological fluids. The aim of this research is the identification of potential biomarkers of lung diseases. She is an author of about 90 publications (According to Scopus: H-Index: 23; According to WOS: H-Index: 20) on peer-reviewed journals, a member of the “Società Italiana di Biochimica e Biologia Molecolare,“ and a Consultant Reviewer for International Journal of Molecular Science, Journal of Chromatography A, COPD, Plos ONE and Nutritional Neuroscience.",institutionString:null,institution:{name:"University of Pavia",institutionURL:null,country:{name:"Italy"}}},editorThree:null}]},overviewPageOFChapters:{paginationCount:51,paginationItems:[{id:"81545",title:"Physiochemical Properties of Essential Oils and Applications",doi:"10.5772/intechopen.104112",signatures:"Sunil Kumar Yadav",slug:"physiochemical-properties-of-essential-oils-and-applications",totalDownloads:0,totalCrossrefCites:0,totalDimensionsCites:null,authors:null,book:{title:"Essential Oils - Advances in Extractions and Biological Applications",coverURL:"https://cdn.intechopen.com/books/images_new/11332.jpg",subseries:{id:"15",title:"Chemical Biology"}}},{id:"81927",title:"Purinergic System in Immune Response",doi:"10.5772/intechopen.104485",signatures:"Yerly Magnolia Useche Salvador",slug:"purinergic-system-in-immune-response",totalDownloads:5,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Purinergic System",coverURL:"https://cdn.intechopen.com/books/images_new/10801.jpg",subseries:{id:"17",title:"Metabolism"}}},{id:"80495",title:"Iron in Cell Metabolism and Disease",doi:"10.5772/intechopen.101908",signatures:"Eeka Prabhakar",slug:"iron-in-cell-metabolism-and-disease",totalDownloads:8,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Iron Metabolism - Iron a Double‐Edged Sword",coverURL:"https://cdn.intechopen.com/books/images_new/10842.jpg",subseries:{id:"17",title:"Metabolism"}}},{id:"81799",title:"Cross Talk of Purinergic and Immune Signaling: Implication in Inflammatory and Pathogenic Diseases",doi:"10.5772/intechopen.104978",signatures:"Richa Rai",slug:"cross-talk-of-purinergic-and-immune-signaling-implication-in-inflammatory-and-pathogenic-diseases",totalDownloads:12,totalCrossrefCites:0,totalDimensionsCites:0,authors:null,book:{title:"Purinergic System",coverURL:"https://cdn.intechopen.com/books/images_new/10801.jpg",subseries:{id:"17",title:"Metabolism"}}}]},overviewPagePublishedBooks:{paginationCount:27,paginationItems:[{type:"book",id:"7006",title:"Biochemistry and Health Benefits of Fatty Acids",subtitle:null,coverURL:"https://cdn.intechopen.com/books/images_new/7006.jpg",slug:"biochemistry-and-health-benefits-of-fatty-acids",publishedDate:"December 19th 2018",editedByType:"Edited by",bookSignature:"Viduranga Waisundara",hash:"c93a00abd68b5eba67e5e719f67fd20b",volumeInSeries:1,fullTitle:"Biochemistry and Health Benefits of Fatty Acids",editors:[{id:"194281",title:"Dr.",name:"Viduranga Y.",middleName:null,surname:"Waisundara",slug:"viduranga-y.-waisundara",fullName:"Viduranga Y. Waisundara",profilePictureURL:"https://mts.intechopen.com/storage/users/194281/images/system/194281.jpg",biography:"Dr. Viduranga Waisundara obtained her Ph.D. in Food Science and Technology from the Department of Chemistry, National University of Singapore, in 2010. She was a lecturer at Temasek Polytechnic, Singapore from July 2009 to March 2013. She relocated to her motherland of Sri Lanka and spearheaded the Functional Food Product Development Project at the National Institute of Fundamental Studies from April 2013 to October 2016. She was a senior lecturer on a temporary basis at the Department of Food Technology, Faculty of Technology, Rajarata University of Sri Lanka. She is currently Deputy Principal of the Australian College of Business and Technology – Kandy Campus, Sri Lanka. 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Since 1983, he has been a faculty member of the RO Perelman Department of Dermatology, NYU School of Medicine, where he is codirector of a training grant in cutaneous biology. Dr. Blumenberg’s research is focused on the epidermis, expression of keratin genes, transcription profiling, keratinocyte differentiation, inflammatory diseases and cancers, and most recently the effects of the microbiome on the skin. He has published more than 100 peer-reviewed research articles and graduated numerous Ph.D. and postdoctoral students.",institutionString:null,institution:{name:"New York University Langone Medical Center",institutionURL:null,country:{name:"United States of America"}}}]},{type:"book",id:"7978",title:"Vitamin A",subtitle:null,coverURL:"https://cdn.intechopen.com/books/images_new/7978.jpg",slug:"vitamin-a",publishedDate:"May 15th 2019",editedByType:"Edited by",bookSignature:"Leila Queiroz Zepka, Veridiana Vera de Rosso and Eduardo Jacob-Lopes",hash:"dad04a658ab9e3d851d23705980a688b",volumeInSeries:3,fullTitle:"Vitamin A",editors:[{id:"261969",title:"Dr.",name:"Leila",middleName:null,surname:"Queiroz Zepka",slug:"leila-queiroz-zepka",fullName:"Leila Queiroz Zepka",profilePictureURL:"https://mts.intechopen.com/storage/users/261969/images/system/261969.png",biography:"Prof. Dr. Leila Queiroz Zepka is currently an associate professor in the Department of Food Technology and Science, Federal University of Santa Maria, Brazil. She has more than fifteen years of teaching and research experience. She has published more than 550 scientific publications/communications, including 15 books, 50 book chapters, 100 original research papers, 380 research communications in national and international conferences, and 12 patents. She is a member of the editorial board of five journals and acts as a reviewer for several national and international journals. Her research interests include microalgal biotechnology with an emphasis on microalgae-based products.",institutionString:"Universidade Federal de Santa Maria",institution:{name:"Universidade Federal de Santa Maria",institutionURL:null,country:{name:"Brazil"}}}]},{type:"book",id:"7953",title:"Bioluminescence",subtitle:"Analytical Applications and Basic Biology",coverURL:"https://cdn.intechopen.com/books/images_new/7953.jpg",slug:"bioluminescence-analytical-applications-and-basic-biology",publishedDate:"September 25th 2019",editedByType:"Edited by",bookSignature:"Hirobumi Suzuki",hash:"3a8efa00b71abea11bf01973dc589979",volumeInSeries:4,fullTitle:"Bioluminescence - Analytical Applications and Basic Biology",editors:[{id:"185746",title:"Dr.",name:"Hirobumi",middleName:null,surname:"Suzuki",slug:"hirobumi-suzuki",fullName:"Hirobumi Suzuki",profilePictureURL:"https://mts.intechopen.com/storage/users/185746/images/system/185746.png",biography:"Dr. Hirobumi Suzuki received his Ph.D. in 1997 from Tokyo Metropolitan University, Japan, where he studied firefly phylogeny and the evolution of mating systems. He is especially interested in the genetic differentiation pattern and speciation process that correlate to the flashing pattern and mating behavior of some fireflies in Japan. He then worked for Olympus Corporation, a Japanese manufacturer of optics and imaging products, where he was involved in the development of luminescence technology and produced a bioluminescence microscope that is currently being used for gene expression analysis in chronobiology, neurobiology, and developmental biology. Dr. Suzuki currently serves as a visiting researcher at Kogakuin University, Japan, and also a vice president of the Japan Firefly Society.",institutionString:"Kogakuin University",institution:null}]}]},openForSubmissionBooks:{paginationCount:2,paginationItems:[{id:"11579",title:"Animal Welfare - New Insights",coverURL:"https://cdn.intechopen.com/books/images_new/11579.jpg",hash:"12e4f41264cbe99028655e5463fa941a",secondStepPassed:!1,currentStepOfPublishingProcess:2,submissionDeadline:"June 1st 2022",isOpenForSubmission:!0,editors:[{id:"51520",title:"Dr.",name:"Shao-Wen",surname:"Hung",slug:"shao-wen-hung",fullName:"Shao-Wen Hung"}],equalEditorOne:null,equalEditorTwo:null,equalEditorThree:null},{id:"11578",title:"Antibiotics and Probiotics in Animal Food - Impact and Regulation",coverURL:"https://cdn.intechopen.com/books/images_new/11578.jpg",hash:"3731c009f474c6ed4293f348ca7b27ac",secondStepPassed:!1,currentStepOfPublishingProcess:2,submissionDeadline:"June 3rd 2022",isOpenForSubmission:!0,editors:[{id:"225390",title:"Dr.",name:"Asghar Ali",surname:"Kamboh",slug:"asghar-ali-kamboh",fullName:"Asghar Ali Kamboh"}],equalEditorOne:null,equalEditorTwo:null,equalEditorThree:null}]},onlineFirstChapters:{paginationCount:0,paginationItems:[]},subseriesFiltersForOFChapters:[],publishedBooks:{},subseriesFiltersForPublishedBooks:[],publicationYearFilters:[],authors:{}},subseries:{item:{id:"38",type:"subseries",title:"Pollution",keywords:"Human activity, Pollutants, Reduced risks, Population growth, Waste disposal, Remediation, Clean environment",scope:"\r\n\tPollution is caused by a wide variety of human activities and occurs in diverse forms, for example biological, chemical, et cetera. In recent years, significant efforts have been made to ensure that the environment is clean, that rigorous rules are implemented, and old laws are updated to reduce the risks towards humans and ecosystems. However, rapid industrialization and the need for more cultivable sources or habitable lands, for an increasing population, as well as fewer alternatives for waste disposal, make the pollution control tasks more challenging. Therefore, this topic will focus on assessing and managing environmental pollution. It will cover various subjects, including risk assessment due to the pollution of ecosystems, transport and fate of pollutants, restoration or remediation of polluted matrices, and efforts towards sustainable solutions to minimize environmental pollution.
",coverUrl:"https://cdn.intechopen.com/series_topics/covers/38.jpg",hasOnlineFirst:!1,hasPublishedBooks:!0,annualVolume:11966,editor:{id:"110740",title:"Dr.",name:"Ismail M.M.",middleName:null,surname:"Rahman",slug:"ismail-m.m.-rahman",fullName:"Ismail M.M. Rahman",profilePictureURL:"https://mts.intechopen.com/storage/users/110740/images/2319_n.jpg",biography:"Ismail Md. Mofizur Rahman (Ismail M. M. Rahman) assumed his current responsibilities as an Associate Professor at the Institute of Environmental Radioactivity, Fukushima University, Japan, in Oct 2015. He also has an honorary appointment to serve as a Collaborative Professor at Kanazawa University, Japan, from Mar 2015 to the present. \nFormerly, Dr. Rahman was a faculty member of the University of Chittagong, Bangladesh, affiliated with the Department of Chemistry (Oct 2002 to Mar 2012) and the Department of Applied Chemistry and Chemical Engineering (Mar 2012 to Sep 2015). Dr. Rahman was also adjunctly attached with Kanazawa University, Japan (Visiting Research Professor, Dec 2014 to Mar 2015; JSPS Postdoctoral Research Fellow, Apr 2012 to Mar 2014), and Tokyo Institute of Technology, Japan (TokyoTech-UNESCO Research Fellow, Oct 2004–Sep 2005). \nHe received his Ph.D. degree in Environmental Analytical Chemistry from Kanazawa University, Japan (2011). He also achieved a Diploma in Environment from the Tokyo Institute of Technology, Japan (2005). Besides, he has an M.Sc. degree in Applied Chemistry and a B.Sc. degree in Chemistry, all from the University of Chittagong, Bangladesh. \nDr. Rahman’s research interest includes the study of the fate and behavior of environmental pollutants in the biosphere; design of low energy and low burden environmental improvement (remediation) technology; implementation of sustainable waste management practices for treatment, handling, reuse, and ultimate residual disposition of solid wastes; nature and type of interactions in organic liquid mixtures for process engineering design applications.",institutionString:null,institution:{name:"Fukushima University",institutionURL:null,country:{name:"Japan"}}},editorTwo:{id:"201020",title:"Dr.",name:"Zinnat Ara",middleName:null,surname:"Begum",slug:"zinnat-ara-begum",fullName:"Zinnat Ara Begum",profilePictureURL:"https://mts.intechopen.com/storage/users/201020/images/system/201020.jpeg",biography:"Zinnat A. Begum received her Ph.D. in Environmental Analytical Chemistry from Kanazawa University in 2012. She achieved her Master of Science (M.Sc.) degree with a major in Applied Chemistry and a Bachelor of Science (B.Sc.) in Chemistry, all from the University of Chittagong, Bangladesh. Her work affiliations include Fukushima University, Japan (Visiting Research Fellow, Institute of Environmental Radioactivity: Mar 2016 to present), Southern University Bangladesh (Assistant Professor, Department of Civil Engineering: Jan 2015 to present), and Kanazawa University, Japan (Postdoctoral Fellow, Institute of Science and Engineering: Oct 2012 to Mar 2014; Research fellow, Venture Business Laboratory, Advanced Science and Social Co-Creation Promotion Organization: Apr 2018 to Mar 2021). 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For example, some of the issues of interest could be the following: Advances in evolutionary computation (Genetic algorithms, Genetic programming, Bio-inspired metaheuristics, Hybrid metaheuristics, Parallel ECs); Applications of evolutionary algorithms (Machine learning and Data Mining with EAs, Search-Based Software Engineering, Scheduling, and Planning Applications, Smart Transport Applications, Applications to Games, Image Analysis, Signal Processing and Pattern Recognition, Applications to Sustainability).",coverUrl:"https://cdn.intechopen.com/series_topics/covers/25.jpg",keywords:"Genetic Algorithms, Genetic Programming, Evolutionary Programming, Evolution Strategies, Hybrid Algorithms, Bioinspired Metaheuristics, Ant Colony Optimization, Evolutionary Learning, Hyperparameter Optimization"},{id:"26",title:"Machine Learning and Data Mining",scope:"The scope of machine learning and data mining is immense and is growing every day. 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We welcome chapters presenting research on the many applications of multi-agent studies including, but not limited to, the following key areas: machine learning for multi-agent systems; modeling swarms robots and flocks of UAVs with multi-agent systems; decision science and multi-agent systems; software engineering for and with multi-agent systems; tools and technologies of multi-agent systems.",coverUrl:"https://cdn.intechopen.com/series_topics/covers/27.jpg",keywords:"Collaborative Intelligence, Learning, Distributed Control System, Swarm Robotics, Decision Science, Software Engineering"}],annualVolumeBook:{},thematicCollection:[],selectedSeries:{title:"Artificial Intelligence",id:"14"},selectedSubseries:null},seriesLanding:{item:null},libraryRecommendation:{success:null,errors:{},institutions:[]},route:{name:"onlineFirst.detail",path:"/online-first/81646",hash:"",query:{},params:{id:"81646"},fullPath:"/online-first/81646",meta:{},from:{name:null,path:"/",hash:"",query:{},params:{},fullPath:"/",meta:{}}}},function(){var e;(e=document.currentScript||document.scripts[document.scripts.length-1]).parentNode.removeChild(e)}()