Storage Root of Cassava: Morphological Types, Anatomy, Formation, Growth, Development and Harvest Time Storage Root of Cassava: Morphological Types, Anatomy, Formation, Growth, Development and Harvest Time

Additional information is available at the end of the chapter Abstract Cassava ( Manihot esculenta , Crantz) is considered a starchy root crop that provides staple food for millions of people in tropical and subtropical regions of the world. Research efforts are directed toward genetic breeding and cultivation of cassava to improve cassava storage root starch production, nutritional values, and industrial utilization. Cassava storage root (CSR) is a vegetative storage organ with indeterminate type of growth that has a central cylinder (edible part) originated by the swelling of primary root and crown roots. Comprehensive studies on thickened primary root (secondary growth) are rare, incomplete, and to a certain extent, missing. In this chapter, we review and forward studies that move our knowledge on cassava storage root (CSR). CSR generally forms up to 12 – 14 storage root (SR) per plant, which can originate from three sources of propagating plant materials as well as being induced in vivo and in vitro . Types of storage root (morphologically defined), CSR physiology, tissue anatomy/his-tology (secondary growth), chemical composition of the edible part, biochemical fea- tures, gene expression and proteomics as secondary growth proceeds are of major importance in order to breed cassava plant for agriculture utilization. Storage root morphology varies in shape from cylindrical to globular. Time to initiation of storage root formation varies from 45 to 90 days after planting (DAP), depending on the leaf auxiliary bud position in the vegetative propagating material at the plant source. Storage root growth, starch accumulation, composition of stored starch varies with tissue age across the central cylinder and may be used as a physiological indicator for bulk storage root maturation and storage root harvest time. Protein content and exploratory functionalities : Cassava storage root protein content variations predicted functionalities, patterns of distribution in source and sink organs, and post-harvest physiological deterioration studies using PROTEOMIC ’ s technologies.


Introduction
Cassava (Manihot esculenta, Crantz) is a starchy root crop that provides a staple food source for millions of people in tropical and subtropical regions of the world. Worldwide, research efforts are directed toward genetic breeding and cultivation of cassava to improve cassava storage yield, root starch production, nutritional quality, and industrial utilization. Cassava storage root (CSR) is an indeterminate, vegetative storage organ that results from the swelling of primary root crown root, with the central cylinder as the edible part. Studies on secondary growth of cassava storage root (CSR) are rare, incomplete, and to a certain extent, missing. In this chapter, we review our comprehensive studies related to (CSR) morphology, storage root (SR) formation, SR physiology (growth analysis, development and maturation), anatomy/ histology (secondary growth), and biochemical (carbohydrate, carotenoids, proteins, and gene expression) characteristics as secondary growth proceeds in order to understand yield of CSR.

Storage root of cassava features 2.1. Storage root utilization, shape and diversity
The practical utilization of CSR can be described in relation to 11 features that vary in importance, depending on the end use. These important characteristics are ranked ( Table 1) in relation to their utilization for fresh consumption and industrial use (two most common uses of cassava by mankind).

Storage root of cassava diversity
Diversity in CSR morph types ( Figure 1) is considered important cassava breeding traits when considering mechanical harvest.
Diversity in central cylinder of CSR ( Figure 2) for carotenoids (Figure 2A), and carbohydrate and starch iodine staining pattern ( Figure 2B) indicate a large genetic [1] and are the most popular traits used for genetic breeding proposes [2][3][4].

Cassava storage roots formation and induction
A cassava plant can form up to 14 storage roots per plant, depending on the genotype. Storage root can initiate from three distinct sources ( Figure 3) of plant propagating material. These include direct embryonic root formation at the seed germination event ( Figure 3A) to form a single-tap SR ( Figure 3B), the leaf axillaries bud in stem cuttings forming a single SR ( Figure 3C), and a number of nodal callus from the bases of stem cuttings forming more than one SR ( Figure 3D), and buried nodes at the base of stem cuttings forming SR or induced "in vitro" plants [5]. The effect of leaf bud position on the stem cutting from a 1-year old mother plant is observed in Table 2.

Storage root anatomy and histology features
The anatomy of cassava storage root was first described by Rateaver [7] and more recently at [6]. From the basic secondary growth of CSR shown in Figure 4, it is possible to recognize at least 12 cell types in the storage root associated to secondary tissues including primary   Cassava storage roots grow in length from the apical meristem forming new cells continually, as generally observed in other plants carrying root secondary growth. In addition to the primary tissues ( Figure 4F), cassava storage root has secondary tissues that add thickness to a primary root ( Figure 4B-E). Secondary tissues develop from two types of meristems. Based on these observations, from fibrous root, we defined six stages of CSR growth ( Figure 4G). The cork cambium, originates beneath the epidermis, generally by pericycle dedifferentiation, producing cork cells and pushes them toward the outside of the root. As the cork expands outward, the endodermis, cortex, and epidermis die and peel off. The cork replaces them and becomes the outer covering of the root. The other secondary meristem, the cambium, lies between the primary xylem and the primary phloem. It produces secondary xylem cells toward the center of the root, and secondary phloem cells toward the outside. Qualitatively ( Figure 5) and quantitatively ( Figure 6), this pattern of tissue and cell type distribution in CSR over DAP as secondary growth proceeds indicates that CSR peel (secondary phloem, phellogen, and phelloderm), vascular cambium, and secondary xylem showed in Figure 6A, and central cylinder (vessels and parenchyma cells in secondary xylem) shows opposite fashion. While secondary xylem peels, as well as vessels decrease with DAP, the secondary xylem and secondary parenchyma cells increases. Based on this analysis, we developed a tissue layer sampling system ( Figure 7) and used the procedure for studies on biochemical features such as  Table 2. Cassava storage root formation in relation to leaf bud position in the stem cuttings from a 1-year old mother plant. Number of storage roots formed at leaf axillary bud from stem cuttings of the plant material. Initial fibrous root and defined stage of storage root S1. S2, S3, and S4 (as shown in Figure 4G) were based on root diameter (cm) starting 30 days after planting (DAP).
carbohydrate (single sugar and starch) content [3], amylose percent variation [4], protein content variation [7], carotenoid content and type variation [1], and gene expression analysis [8][9][10].    The SR maturation (physiological maturation), as taken by the rate of CSR growth, starch accumulation, and crude fiber accumulation, and crude fiber/starch ratio vary in relation to conventional utilization of the crop ( Table 3). The major differences occurring are early harvest Step by step for storage root tissue sampling system used to further biochemical feature studies of cassava storage root as secondary growth proceeds. Tissue sample I (layer 1), tissue sample II (layer 2), and tissue sample III (layer 3, layer 4, layer 5). Tissue cell compositions are as described in Figure 5. The overall chemical composition of CSR has recently been reviewed [1]. The major conclusions indicate that fresh peeled cassava storage roots are rich in carbohydrates (30-35%), low in protein (1-2%), and fat (<1%). In addition, CSR has nutritionally significant amounts of calcium (50 mg/100 g), phosphorous (40 mg/100 g), and vitamin C (25 mg/100 g), and poisoned values of cyanogenic glycosides upon the hydrolyses of linamarin [11,12,15,16]. In this chapter, we forward our knowledge on nutritional values of CSR based on three major biochemical features that lead to more precise natural variation in the composition and accumulation of carbohydrates (free sugar and starch), carotenoids (type and content), and proteins (content and exploratory functionalities) in the CSR central cylinder.

Storage root biochemical features and natural genetic variation
This chapter focus on the identification of spontaneous mutations in two biochemical pathways (sucrose/starch conversion and carotenoid biosynthesis), as well as mechanisms of carotenoid and proteins accumulation, and gene expression analysis.
Carbohydrate composition, content, and genetic variation: Sugary cassava is a unusual SR phenotype as observed in Figure 2 (Panel B) for the cross session of SR stained with iodine solution,  cells morphology, free sugar composition, and sucrose/glucose content in relation to normal genotypes and SR tissue age [3].
Carotenoid biosynthesis, accumulation, and genetic diversity: Landraces diversities (Figure 2 (Panel  B)) have been studied to understand carotenoid biosynthesis [6,12] mechanisms of carotenoid accumulation [1,7,13], identification of mutants [13], and breeding commercial varieties [2]. The major achievements, includes the discovery of a putative mutant for the gene LYCb that leads to the accumulation of solely lycopene in the landrace CAS51 and the discovery of a mutant for the gene HYDb that leads to accumulate mainly β-carotene in the landrace CAS64. Discovery of a single point mutation on the gene coding for protein SHSP that lead to the sequestration specifically of β-carotene in landrace CAS64. Six new commercial varieties were developed, registered, and protected in 5 years instead of 15 years as it is ordinarily done. It has been reported that sampling variation among plants and roots from the same plant is responsible for 20-25% [13] that causes uncertainty of values used for selection of clones in a breeding program. The sampling tissue system based on tissue age, as discussed above, could improve the accuracy of quantification of total carotenoid content for this propose.
Protein content and exploratory functionalities: Cassava storage root protein content variations predicted functionalities, patterns of distribution in source and sink organs, and post-harvest physiological deterioration studies using PROTEOMIC's technologies.
Cassava storage root proteins content in relation to color categories of genotypes ( Figure 9): Similar to carbohydrate, protein content varies in two ways. One, higher protein content is observed in pigmented cassava rather than in white cassava ( Figure 9A). Second, protein content varies according to tissue type and age across the central cylinder by decreasing from layer 3 to layer 4 to layer 5 ( Figure 9B). In addition, protein content is strongly correlated with total carotenoid content ( Figure 10). Heat shock proteins (HSPs) are the most abundant proteins types [13] in cassava storage root and are closely associated to accumulation of total carotenoid, with small shock proteins (SHSPs) being the major type of HSP [13].

Synthesis and conclusions
The studies discussed in this chapter highlight the importance of natural variation in landraces previously unknown for the cassava community in several ways. 1. Accurate estimation of the genetic of traits in landraces derived from alteration in two major metabolic pathways (starch and carotenoid) of great relevance for the two recognized practical utilization of CSR by using physiological concepts and sampling strategy. 2. Describing a CSR sampling procedure specific for CSR to estimate traits of agronomic importance for the two major practical utilization of CSR to improve product quality. 3. Incorporation of those genetic variants in a conventional breeding program, which reduced the time for obtain new commercial varieties. 4. Discovery of three putative mutants in the CSR. Further researches to dissect transcriptome and proteome of CSR are under way using the sampling system proposed in this chapter to elucidate molecular mechanisms regulating CSR formation, growth, development, and physiological maturation.
Desenvolvimento Cientifica e Tecnológico -CNPq (grant #480410.2001-1 for functional genomic work); Programa Nacional de Pesquisa em Biotecnologia -CENARGEN (Project No 1 060302058 for carbohydrate analysis); IAEA (contract #13188 for funds supplied to gene expression analysis); National Special acknowledgements to Nature Science Foundation of China (NSFC grant #31271776), and NSFC-CGIAR International (Regional) Cooperation and Exchange Programs (grant #31361140366) for providing funds for this publication.

Source of Funds
National Nature Science Foundation of China (NSFC grant number 31271776).