Transcriptomic analysis of tissue component of the placenta.
The placenta is a unique temporary organ essential for growth of the fetus, which determines the success of pregnancy. Its originality relies on a combination of nutritive, endocrine and immunological functions that control maternal immune tolerance to fetus. In the present chapter, we review gene expression programs of placenta from placenta tissue to isolated cells using high throughput transcriptomic approach. Beside trophoblasts, we focused on immune cells including macrophages, dendritic cells and mast cells. From the gene expression signatures, we identify key pathways for the different trimesters of the normal pregnancy and pathological alterations including preeclampsia and gestational diabetes mellitus.
- gestational diabetes mellitus
- immune cells
- gene regulation
The placenta is a unique temporary organ and the central regulator of maternal-fetal environment . It is a complex organ that needs to adapt constantly to maternal and fetal requirements during the progression of the pregnancy. The placenta is composed of several varieties of cells including trophoblasts, mesenchymal and endothelial cells and immune cells . It is essential for materno-fetal exchange enabling the transfer of regulatory molecules to the fetus and fetal molecules to the maternal circulation . The placenta is also involved in hormonal regulation [4, 5] and immunological defense of mother  and fetus . The placenta synthetizes and secretes large number of molecules necessary for its development, metabolism of mother and fetus growth . These factors including placental hormones and growth factors lead to the regulation of gene expression critical for placenta plasticity and functions including angiogenesis, immune response, decidua invasion, endocrine regulation and fetal nutrition and growth .
The investigation of a complex organ such as placenta requires an approach without
s from 1 in 2001 to 55 in 2017 (Figure 1). The transcriptomic studies have enabled identification of specific genes involved in the progression of the gestation and the outcome of complications. These gene signatures may be used as new biomarkers for maternal and fetal complications of pregnancy.
In this chapter, we will review the literature focusing on the gene expression profiling of placenta tissue and isolated cells during the progression of the gestation and pathological pregnancies.
2. Placenta transcriptome in normal pregnancy
2.1. Gene expression and anatomic organization of placenta
Human placenta is a feto-maternal organ composed of the fetal part (also known as chorion) and the maternal part (also known as decidua). The chorion is composed of trophoblasts, cytotrophoblasts and syncytiotrophoblasts, whereas the decidua contains enlarged endometrial stromal cells (epithelium) and leukocyte
s populations, thus suggesting that these two parts of placenta tissue are functionally different.
Few studies have investigated the transcriptomic profile of the different areas of the placenta tissue (Table 1). As shown in Table 1, two studies have investigated gene expression in amnion, chorion, decidua and villus parenchyma of at term placenta using microarray or RNA-sequencing. A core of gene expression patterns was observed in the different areas of the placenta; they are related to histology categories . Microarray analysis revealed major differences among amnion, chorion and villus parenchyma. It showed that the gene encoding Mucin 1 (MUC1) gene was strongly expressed in the amnion, whereas a cluster of up-modulated genes associated with signal transduction, cell differentiation and immunity categories was found in chorion. Among these genes, tissue remodeling genes, genes induced by interferon and major histocompatibility complex (MHC) genes were strongly up-modulated, suggesting a role for chorion in the plasticity and the immune tolerance of the placenta during pregnancy. Hypoxia-inducible factor (HIF)-1α, a transcription factor known to induce transcription of genes involved in glycolysis, erythropoiesis and angiogenesis , was expressed at low level in villus sections of placenta. In contrast, HIF-1α was up-modulated in amnion chorion and decidua . It is likely that these discrepancies are related to exposition to different gradients of oxygen, which modulate HIF-1α expression.
|Species||Placenta and gestational age||Technique||Results||References|
|Human||At term placentas (amnion, chorion, umbilical cord and section of villus parenchyma)||Microarray||
|Human||At term placenta (amnion, chorion and decidua part)||RNA-sequencing||
Although these studies based on at term placentas are limited, they suggest that distinct tissue transcriptional programs exist in placenta. In addition, some inter-individual variations of the placenta structures have been observed during the second and the third trimester of the pregnancy . Further investigations must include placentas at the different age of the gestation to precisely map gene expression in different areas of placenta during pregnancy.
2.2. Evolution of placenta gene expression during pregnancy
During pregnancy, the placenta gene expression is continuously modulated to adapt immune response to tolerance necessity and to modify metabolism according to pregnancy requirement. Hence, the early stages of the pregnancy are characterized by trophoblast invasion, which leads to placentation. During the mid-gestation, the placenta adapts its gene expression to maintain the fetal growth and the organ development. Finally, during the third trimester, placenta must provide enough nutriments for the growing of the fetus. Some evidence suggests that preterm birth is related to changes in gene expression during pregnancy .
The evolution of placenta gene expression during the different gestational stages is summarized in Table 2. The five studies investigated gene expression at different gestational ages in humans and mice. They identify common gene pathways involved in cell differentiation, immune response and angiogenesis (Table 2). In first trimester, the few genes that are found modulated are strongly involved in cell proliferation vascular development and angiogenesis. At mid-gestation several genes associated with cycle control, including cyclin family, are found up-modulated [17, 19]. There is an enrichment in gene ontology (GO) terms related to growth of the placenta, the set-up and the maturation of villous with blood vessels during first and second trimester as compared with third trimester [15, 20]. In addition, GO terms for cell differentiation and communication are also observed and are related to the organization of placenta structure and plasticity . All studies observed a major change in the gene expression pattern at the end of the pregnancy. The third trimester is associated with the over-expression of genes involved in apoptosis, oxidative stress response and inflammatory process [17, 18], whereas the second and third trimesters share the up-modulation of genes associated with immune response. It has been recently shown that the gene expression program of placentas at the third trimester exhibits activation of the immune response and an increase of oxygen-rich maternal blood in placenta, which reflect labor and delivery route [22, 23].
|Species||Placenta and gestational age||Technique||Results||References|
(14–16 and 18–19, 21, 23–24 weeks) and third trimesters
|Mice||Embryonic day 10.5, 12.5, 15.5 and 17.5||Microarray||
2.3. Term labor and gene expression
The molecular mechanisms regulating the initiation of labor are still poorly understood. The key role of genes involved in prostaglandin synthesis and inflammatory responses in cervix, myometrium and chorio-membranes has been reported in laboring women as compared with non-laboring women . Table 3 summarized the studies evaluating placenta gene expression from preterm versus term labor with vaginal or cesarean deliveries. The commonly modulated genes are involved in immune response and apoptosis. Oros et al. showed a balance of immune modulators with an increased expression of tumor necrosis factor (TNF) and interleukin (IL)-6 and a decrease in interferon (IFN)-γ expression . These results are likely related with cytokine production of at term placentas  and M1 polarization shift of macrophages . Another study showed that gene expression associated with oxidative stress is elevated . It has been previously observed that oxidative stress in placenta explants and production of inflammatory cytokines are related . The TNF levels are elevated during labor, suggesting that TNF may be a biomarker of preterm labor [32, 33]. Based on gene expression in placenta, epidemiological analysis suggested a genetic predisposition to spontaneous preterm labor and preterm birth . Nevertheless, additional investigation of transcriptomic analyses must be necessary to better understand the role of gene expression in term labor.
|Species||Placenta and gestational age||Technique||Results||References|
|Human||5–10 min before delivery (preterm labor or not)||Microarray||
|Human||Preterm (26–36 weeks)
Term (>37 weeks) all with suspicion of preterm labor
|Human||Term (38–42 weeks) with vaginal delivery or cesarean||Microarray||
|Human||Term (34 weeks) with vaginal (laboring) delivery or cesarean (non-laboring)||Microarray||
|Human||Term and term nonlaboring cesarean deliveries||Microarray||
2.4. Placenta microRNAs in pregnancy
MicroRNAs are small non-coding 20–24 nucleotides that target and regulate numerous genes . They are expressed by tissues and cells but can also circulate in blood. They can be used as biomarkers . It has been reported that more than 500 microRNAs are produced by the human placenta and a part of them are placenta specific . Their expression varies with the gestational stages; 191 microRNAs are differentially modulated in placentas from first versus third trimester . During the first trimester, microRNAs are associated with angiogenesis, anti-apoptosis and oncogenesis categories, whereas microRNAs from third trimester are related to cell differentiation and tumor suppression categories. Luo et al. found that miR-378a-5p is up-modulated in first and second trimesters but not in third trimester in placenta tissue . The variations of microRNAs expression during different gestational ages suggest that they may regulate specific functions during pregnancy. However, the studies investigating microRNAs in total tissue in normal pregnancy are scarce and further investigations are necessary to better characterize microRNA signature and their temporal expression pattern in the placenta at different ages of gestation.
3. Placenta transcriptome in pathological pregnancy
The alteration of gene expression pattern in placenta tissue may reflect metabolic disorders associated with pregnancy such as gestational diabetes mellitus or pathologies that compromise pregnancy success such as preeclampsia . We will summarize main findings reported in preeclampsia and gestational diabetes mellitus that represent the two pathologies mainly investigated by transcriptomic analyses.
Preeclampsia is a severe placenta disease that occurs in 3–5% of pregnant women and is a source of complications for mother and fetus [41, 42, 43]. The preeclampsia is initiated at the time of trophoblast invasion and remodeling of the spiral arteries during the first and early second trimester of pregnancy [41, 44, 45]. Initial studies have shown that elevated levels of various placental proteins in maternal blood such as FLT1 (fms-related tyrosin kinase 1), sENG (soluble engolin) and PGF (placental growth factor) in early pregnancy may be predictive of preeclampsia development  but the presence of false negative rates limits their clinical use . The use of high throughput methods such as microarray is likely useful to identify new biomarkers and potential therapeutic targets. Table 4 summarizes transcriptional studies of placenta from women with preeclampsia. Most studies use at term placentas and report a number of modulated genes varying from 20 to more than 2000.
|Species||Placenta and gestational age||Technique||Results||References|
|Human||At term preeclampsia or healthy||Microarray||
|Human||At term preeclampsia or healthy||Microarray||
|Human||At term (>37 weeks) preeclampsia or healthy||Microarray||
|Human||Term (32–40 weeks)||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (253–273 days)||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (<32 weeks)||Microarray||
|Human||Placenta with preeclampsia, increased vascular resistance (notch) or from healthy donors||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (39 weeks)||RNA-Seq||
|Human||Placenta with preeclampsia or from healthy donors (35–39 weeks)||Microarray||
|Human||Placenta with preeclampsia (31–39 weeks), preterm labor (24–33 weeks) or from healthy donors (37–39 weeks)||Microarray||
|Human||Placenta with preeclampsia (mean 34.2 weeks), with small for gestational age (mean 34.5 weeks) or both (mean 33.9 weeks)||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (mean 37.5 and 39.8 weeks, respectively)||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (mean 34.6 and 38.6 weeks, respectively)||Microarray||
|Human||Placenta with preeclampsia or from healthy donors (34–37 weeks)||Microarray||
|Human||At term placenta with preeclampsia or from healthy donors||Microarray||
|Human||Variable||Meta-gene analysis on microarray experiment in published studies||
|Human||Term||Meta-gene analysis on microarray experiment in published studies||
Among the up-modulated genes, those associated with the regulation of the immune response are most frequently reported in transcriptomic analysis of preeclampsia placentas (Table 4). These findings may be related to the up-regulated gene expression profile of circulating cells from pregnant women with preeclampsia [65, 66, 67] and to the observation of increased levels of inflammatory cytokines including IL-6, IL-8 and TNF [68, 69]. Indeed, using microarray approach on blood samples, we observed a specific transcriptional signature of genes up-modulated in severe preeclampsia including genes associated with ribosome and complement functions . In addition, we had identified VSIG4 (V-set and immunoglobulin domain containing 4) as a biomarker of severe preeclampsia.
Among genes associated with immune response, three studies reported the modulation of human leukocyte antigen (HLA) genes [48, 54, 59]. HLA-A, HLA-B and HLA-DRB1 are up-modulated in placentas from preeclampsia as compared to control group. The molecules, HLA-A and HLA-DRB1 have been associated with preeclampsia outcome [48, 70, 71] and have been related to reduced birth weight but not to placenta weight. Clinical observations show that both birth weight  and placenta weight  are decreased in pregnant women with preeclampsia.
Gene associated with hypoxia and oxidative stress are frequently found in placenta from women with preeclampsia. The placental hypoxia associated to preeclampsia is due to shallow implantation, impaired trophoblast invasion or vascularization of placenta arteries [40, 74]. The hypoxia leads to low birth weight and newborn diseases . The gene encoding leptin has emerged as a potential biomarker of preeclamptic placentas from transcriptomic analyses [52, 56, 76]. This gene is known to be up-modulated in placenta from patients who experience chronic hypoxic ischemia . Other genes involved in hypoxia are down-modulated in preeclampsia: this is the case for the gene encoding a glutathione reductase, an antioxidant protein, whereas the gene encoding the thioredoxin peroxidase is up-regulated . In contrast, Zhang et al. found no modulation of genes encoding enzymes involved in oxidative stress as compared to controls .
The transcription analysis enables the identification of several up-modulated genes including genes involved in apoptosis processes , activin-A, inhibin A , soluble sENG , soluble sFlt-1  and placental growth factor PGF . In these studies, three angiogenic genes are found differently expressed: they include sFLT1 (also known as vascular endothelial growth factor, VEGF), PGF and sENG that are up-modulated in preeclampsia and associated with severe preeclampsia [61, 62, 82, 83]. In a case-control clinical study, the level of sFLT1 increases and that of PGF decreases during normal pregnancy; this response is more pronounced in women who develop preeclampsia . Thus, it has been proposed that sFLT1 could be used as biomarker for predicting the development of preeclampsia . However, these genes are not found in all transcriptomic studies of preeclamptic placentas . This discrepancy may be explained by the clinical heterogeneity of preeclampsia, placenta sampling sites, gestational weeks, sex of the child, labor and the method of delivery. These parameters restrict the use of these genes as biomarkers for diagnosis or prognosis of preeclampsia.
3.2. Gestational diabetes mellitus
Placenta is an endocrine organ that provides glucose to fetus. A pathological state of insulin resistance leading to glucose intolerance is called gestational diabetes mellitus (GDM) . The mother may develop hemorrhage, hypertension, infection, difficulty in labor and increased risk of mortality . The placentas from GDM patients exhibit histological alterations and elevation of its size and weight at third trimester. This may be due to insufficient production of placental hormones . To better understand the role of placenta in the development of GDM, transcriptomic analyses of placenta from pregnant women with a GDM or mice model of diabetes have been conducted in some studies (Table 5). Few genes are differentially modulated and they are predominantly related to extracellular matrix remodeling, immune response and regulation of apoptosis categories.
|Species||Placenta and gestational age||Transcriptomic technique||Results||References|
|Human||Placenta with GDM
|Human||Placenta with GDM or from healthy donors
(mean 37.7–38.4 weeks)
(60% calories-by-fat diet induced-diabetes)
|E 12.5||nCounter nanostring||
|Human||At term placenta with GDM or from healthy donors||Microarray||
|Human||Placenta with GDM or from healthy donors
|Human||Placenta with GDM
Among the immune response category, genes such as TNF are up-modulated. TNF is known to be involved in insulin resistance, obesity and diabetes [95, 96]. Although TNF levels are increased in GDM and type 1 diabetes , no relation was found between placenta TNF mRNA amounts and the levels of this cytokine in maternal blood with GDM [98, 99, 100].
Transcriptional studies reveal strong association of leptin (LEP) with GDM [90, 101, 102]. LEP is up-modulated in placenta and could be a cause or a result of glucose uptake in placentas from women with GDM [102, 103]. Elevated circulating levels of LEP are found in GDM but LEP is also found in others pathological pregnancies such as preeclampsia. The changes in LEP concentration are associated with the modulation of cytokines such as TNF .
Finally, common modulated genes are found in transcriptome analyses of placental gene expression in term pregnancy complications, suggesting that they could be associated more to a dysfunction of the placenta than to a specific complication. As examples, FLT1 (fms-related tyrosine kinase 1) or PAPPA2 (Pappalysin-2) are commonly modulated in placenta disorders and could be used as biomarkers.
3.3. miRNAs in complicated pregnancy
Some investigations highlight dysregulation of microRNAs in preeclampsia and GDM, suggesting their role in pathological pregnancies . In preeclampsia, the upregulation of miR-210, miR-20b, miR-29b, miR-16, miR-155 and miR-675 is associated with angiogenesis and trophoblast invasion [44, 105, 106, 107, 108, 109, 110]. In contrast, down-modulation of miR-378a-5p, miR-376 and miR-195 is related to the promotion of trophoblast invasion and proliferation [39, 111]. However, some discrepancies are observed according to transcriptomic studies. For example, several studies showed that miR-210 represents the most up-regulated microRNAs in preeclampsia, whereas other studies found no change in placenta from preeclampsia compared to healthy donors .
Altered circulating levels of specific microRNAs have been reported in compromised pregnancies. For example, the low detection of miR-376c level in blood of 16–18 weeks pregnant women is related with the outcome of preeclampsia . In similar conditions, three miRNAs, including miR-132, miR-29a and miR-222, are decreased in blood from women at 16–19 gestational weeks who were diagnosed a GDM at 25–28 weeks of gestation . Thus, despite the promising perspectives to use microRNAs in diagnosis of complicated pregnancies, future studies are needed to provide a proof of concept.
4. Gene expression of placental immune cells
Beside the investigation of gene expression in whole placenta, several studies investigated transcriptomic profiles of isolated placental cells including immune and nonimmune cells. We focused here only on immune cells. Placental immune cells are necessary for development of the placenta bed and the semi-allogeneic tolerance of the fetal-placental unit. In addition, they are involved in the regulation of trophoblast invasion, angiogenesis and spiral artery remodeling. The distribution of immune placental cells is markedly distinct from that of circulating immune cells: NK cells and macrophages are found at high density, whereas lymphocytes, dendritic cells and mast cells are less represented. Therefore, we studied the transcriptomic response of macrophages, dendritic cells and mast cells.
Placental macrophages include decidual and Hofbauer cells from decidua (basalis) or villous stroma, respectively. They are the most abundant cells that persist throughout pregnancy [114, 115]. They play a central role in maintaining a homeostasis during pregnancy by controlling imbalance between anti- and pro-inflammatory features of placenta environment [116, 117]. Indeed, the pro-inflammatory (M1) polarization of macrophages or the prevention of M2 polarization (anti-inflammatory and/or immunoregulatory properties) leads to spontaneous abortion or miscarriage , inadequate remodeling of the uterine vessels during placentation and protection against infection .
4.1.1. First and second trimesters
After placentation, placental macrophages exhibit a M2 profile during the first and second trimesters. This M2 profile contributes to the anti-inflammatory environment of the first part of pregnancy and the prevention of the rejection of the fetus by maternal immune system . The first study of gene expression pattern in human first trimester decidual macrophages was conducted in 2008 . The authors identified 14,000 genes modulated in placental macrophages compared to blood monocytes. Genes involved in immunomodulation and remodeling categories are associated with M2 phenotype. Hence, the genes encoding CCL18, CD209, insulin-like growth factor-1 (IGF-1), mannose receptor c type (MRC)-1 and fibronectin-1 are up-modulated. Houser et al. investigated the polarization of macrophage subsets isolated from decidua from first trimester (6–12 weeks) . They identified two distinct macrophage subsets according to CD11c expression, namely CD11clow and CD11chigh subsets. Both subsets expressed two M2 markers, CD209 (DC-SIGN) and CD206 (mannose receptor). Genes involved in invasion, mobility, inflammatory process and lipid metabolism are enriched in the two subsets, but genes involved in antiapoptotic pathways are found only in CD11high macrophages. In contrast, CD11clow macrophages express genes involved in growth regulation and development, and extracellular communication. These findings are in agreement with those of Svensson et al. who found two macrophage subsets, ICAM-3high and ICAM-3low, in macrophages from first trimester (7–12 weeks) . Both macrophage populations express genes and cytokines associated with M2 profile and are related to CD11c expression.
4.1.2. Third trimester (term placentas)
The third trimester is associated to a pro-inflammatory environment. This inflammatory state is due to the synchronization of immune-endocrine cross-talk, based on especially estrogens , which favors M1 polarization of macrophages . Indeed, a low level of estradiol is sufficient to promote macrophage M1 polarization, as measured by the secretion of inflammatory cytokines such as IL-1β, IL-6 and TNF. The investigation of DNA of at term placenta macrophages reveals the methylation of inflammatory genes including TLR9, IL-1β, IL-12RB2, CD48 and FGR and the hypomethylation of M2 genes including CCL2, CCL13, CCL14 and CD209 . Using microarray analysis, we previously investigated the polarization of macrophages from at term placentas in comparison to macrophage-derived monocytes . We did not find a polarization of at term placenta macrophages. Indeed, both M1 (CXCL9, EDN1, IL-15, IL-15RA and IL-2RA) and M2 (FN1, CTSC and CCL23) genes were up-modulated. Interestingly, we reported for the first time the ability of placental macrophages to formed multinuclear giant cells (MGCs). These MGCs present functional enrichment in genes associated with cytoskeleton reorganization and immune response. In addition, as observed in placental macrophages, MGCs are not polarized. Taking together, although the third trimester is associated with an inflammatory environment, the activation of placental macrophages does not reproduce the classical model of M1/M2 polarization.
4.1.3. Placenta macrophages in pathological pregnancy
Placental macrophages are likely associated with number of pregnancy complications. Here, we focused on three pathological conditions, preeclampsia, GDM and chorioamnionitis, in which the involvement of macrophages is documented  .
Although alterations of macrophages are suspected in preeclampsia, the studies of placenta macrophages during preeclampsia are controversial [116, 129]. Some studies reported a decreased [115, 130, 131] or an increased [132, 133, 134, 135] number of placental macrophages. In addition, they produce inflammatory cytokines and anti-inflammatory cytokines [136, 137]. It has been also reported that the count of M2 macrophages is decreased in the decidua of preeclamptic placentas . The transcriptomic and protein expression of CD74, a HLA class II molecule, are decreased in placental macrophages of preeclampsia women. This down-regulation of CD74 interferes with trophoblast-macrophage cross-talk . Prins et al. investigated macrophages in early decidua from women who later developed preeclampsia . They observed an increased expression of CD68 mRNA, but decreased CD206/CD68 mRNA ratio, suggesting that the number of M2 macrophages is affected before the onset of preeclampsia. This finding may be related to the increased number of M1 macrophages in preeclamptic placenta found by other authors . A better comprehension of the rupture of the M1/M2 balance may provide insight into understanding of preeclampsia pathogenesis.
18.104.22.168. Gestational diabetes mellitus
The inflammation associated with GDM leads to macrophage infiltration into placenta, suggesting a key role of these cells during this metabolic complication of pregnancy. The number of macrophages is increased in placentas from women with GDM as compared to normal pregnancy . Placental macrophages, isolated from an experimental model of diabetes (rats receiving an injection of streptozotocin), change from M2 to M1 inflammatory profile under high glucose stimulation . Similarly, isolated placental macrophages from diabetic women present a M1 or an atypical M2 profile . Immunohistochemistry and PCR approaches show that the mRNA expression levels of TNF and IL-6 are higher in placentas from women with GDM than in controls, suggesting an inflammatory profile of placenta macrophages. Further studies are needed to define the role of inflammatory macrophages in GDM.
During pregnancy, placenta could be the target of infectious agents. The chorioamnionitis, mainly due to ascending polymicrobial infection, is a severe complication of the pregnancy leading to an acute inflammation of the membrane and chorion . In human placenta, we observed a decreased number of macrophages expressing CD14, CD68 and CD163 in at term placentas from women with chorioamnionitis compared to placenta from normal pregnancies . Our results are in agreement with other reports [144, 145]. In addition, isolated macrophages from placenta with chorioamnionitis exhibit an altered inflammatory response with decreased production of IL-10 . Other reports describe a M2 profile of macrophages from chorioamnionitis placentas . These findings underline the role of placenta macrophages in the control of infection in pregnant women.
4.2. Dendritic cells
Dendritic cells are found at the feto-maternal interface and in decidua basalis . They represent approximately 2% of leukocytes from placenta and their number does not vary through gestation. Both mature dendritic cells (expressing CD83) and immature dendritic cells (expressing CD14 and DC-SIGN) have been identified in placenta tissue . We previously isolated decidual dendritic cells from at term placentas of healthy women by combining negative selection with anti-CD14 antibodies and positive selection with anti-CD11c antibodies . We found that 1525 genes are differentially modulated with a specific transcriptional profile as compared to monocyte-derived dendritic cells. It mainly consists of the up-modulation of genes involved in immunomodulatory cytokines, estrogen and progesterone gene pathway. The investigation of gene expression programs in placenta dendritic cells is emerging and will require additional investigation to associate gene expression and dendritic cells subsets in normal and pathological pregnancy.
4.3. Mast cells
Mast cells are found in human placentas  and it has been reported that mast cells and their products, especially histamine, could participate in the placenta development. Indeed, histamine is involved in trophoblast invasion and growth  and the cross-talk with trophoblasts
4.4. Common transcriptomic signature of macrophages, dendritic cells and mast cells
To identify a common signature of these three placenta immune cells, we performed a retro-analysis of microarray data deposited in Gene Expression Omnibus at the National Center for Biotechnology Information. We evaluated the transcriptomic signatures of macrophages, dendritic cells and mast cells from at term placentas of healthy women and compared them to those of monocytes, monocyte-derived dendritic cells and the cell line HMC-1, respectively. As depicted in Figure 2A, the hierarchical clustering reveals two major branches that distinguish cells of placenta origin from the others (ANOVA, p < 0.001). Focusing on common modulated genes, we observed that 479 (Figure 2B) and 5671 (Figure 2C) genes are up- and down-regulated, respectively. Interestingly, 45% of down-modulated genes are associated with pregnancy versus 10% of up-modulated genes. Thus, these data suggest that innate immune cells express a core of genes that reflect the influence of placenta microenvironment.
Transcriptional analysis of placenta reveals the modulation of a very large number of genes and pathways, allowing a better understanding of tissue and cell mechanisms of normal and pathological pregnancy. The development of RNA-Seq, with a better genomic coverage and more sensitivity than microarray, and single cell technology will permit promises to detect genes with low expression level and to reveal differential new gene expression for normal and complicated pregnancies. Thus, this study reveals only the visible part of an iceberg and suggests that the immersed part must be further investigated.
We are very thankful to Dr. Christian Capo for his help and councils regarding the redaction of the manuscript. Soraya Mezouar was supported by a “Fondation pour la Recherche Médicale” postdoctoral fellowship (reference: SPF20151234951). This work was supported by the French Government under the “Investissements d’avenir” (investments for the future) program managed by the “Agence Nationale de la Recherche” (reference: Méditerranée Infection 10-IAHU-03).
Soraya Mezouar and Jean-Louis Mege conceived and wrote the paper.
Declaration of interest
The authors declare no competing interests.
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