IntechOpen was founded by scientists, for scientists, in order to make book publishing accessible around the globe. Over the last two decades, this has driven Open Access (OA) book publishing whilst levelling the playing field for global academics. Through our innovative publishing model and the support of the research community, we have now published over 5,700 Open Access books and are visited online by over three million academics every month. These researchers are increasingly working in broad technology-based subjects, driving multidisciplinary academic endeavours into human health, environment, and technology.
\\n\\n
By listening to our community, and in order to serve these rapidly growing areas which lie at the core of IntechOpen's expertise, we are launching a portfolio of Open Science journals:
All three journals will publish under an Open Access model and embrace Open Science policies to help support the changing needs of academics in these fast-moving research areas. There will be direct links to preprint servers and data repositories, allowing full reproducibility and rapid dissemination of published papers to help accelerate the pace of research. Each journal has renowned Editors in Chief who will work alongside a global Editorial Board, delivering robust single-blind peer review. Supported by our internal editorial teams, this will ensure our authors will receive a quick, user-friendly, and personalised publishing experience.
\\n\\n
"By launching our journals portfolio we are introducing new, dedicated homes for interdisciplinary technology-focused researchers to publish their work, whilst embracing Open Science and creating a unique global home for academics to disseminate their work. We are taking a leap toward Open Science continuing and expanding our fundamental commitment to openly sharing scientific research across the world, making it available for the benefit of all." Dr. Sara Uhac, IntechOpen CEO
\\n\\n
"Our aim is to promote and create better science for a better world by increasing access to information and the latest scientific developments to all scientists, innovators, entrepreneurs and students and give them the opportunity to learn, observe and contribute to knowledge creation. Open Science promotes a swifter path from research to innovation to produce new products and services." Alex Lazinica, IntechOpen founder
\\n\\n
In conclusion, Natalia Reinic Babic, Head of Journal Publishing and Open Science at IntechOpen adds:
\\n\\n
“On behalf of the journal team I’d like to thank all our Editors in Chief, Editorial Boards, internal supporting teams, and our scientific community for their continuous support in making this portfolio a reality - we couldn’t have done it without you! With your support in place, we are confident these journals will become as impactful and successful as our book publishing program and bring us closer to a more open (science) future.”
\\n\\n
We invite you to visit the journals homepage and learn more about the journal’s Editorial Boards, scope and vision as all three journals are now open for submissions.
\\n\\n
Feel free to share this news on social media and help us mark this memorable moment!
After years of being acknowledged as the world's leading publisher of Open Access books, today, we are proud to announce we’ve successfully launched a portfolio of Open Science journals covering rapidly expanding areas of interdisciplinary research.
\n\n\n\n
IntechOpen was founded by scientists, for scientists, in order to make book publishing accessible around the globe. Over the last two decades, this has driven Open Access (OA) book publishing whilst levelling the playing field for global academics. Through our innovative publishing model and the support of the research community, we have now published over 5,700 Open Access books and are visited online by over three million academics every month. These researchers are increasingly working in broad technology-based subjects, driving multidisciplinary academic endeavours into human health, environment, and technology.
\n\n
By listening to our community, and in order to serve these rapidly growing areas which lie at the core of IntechOpen's expertise, we are launching a portfolio of Open Science journals:
All three journals will publish under an Open Access model and embrace Open Science policies to help support the changing needs of academics in these fast-moving research areas. There will be direct links to preprint servers and data repositories, allowing full reproducibility and rapid dissemination of published papers to help accelerate the pace of research. Each journal has renowned Editors in Chief who will work alongside a global Editorial Board, delivering robust single-blind peer review. Supported by our internal editorial teams, this will ensure our authors will receive a quick, user-friendly, and personalised publishing experience.
\n\n
"By launching our journals portfolio we are introducing new, dedicated homes for interdisciplinary technology-focused researchers to publish their work, whilst embracing Open Science and creating a unique global home for academics to disseminate their work. We are taking a leap toward Open Science continuing and expanding our fundamental commitment to openly sharing scientific research across the world, making it available for the benefit of all." Dr. Sara Uhac, IntechOpen CEO
\n\n
"Our aim is to promote and create better science for a better world by increasing access to information and the latest scientific developments to all scientists, innovators, entrepreneurs and students and give them the opportunity to learn, observe and contribute to knowledge creation. Open Science promotes a swifter path from research to innovation to produce new products and services." Alex Lazinica, IntechOpen founder
\n\n
In conclusion, Natalia Reinic Babic, Head of Journal Publishing and Open Science at IntechOpen adds:
\n\n
“On behalf of the journal team I’d like to thank all our Editors in Chief, Editorial Boards, internal supporting teams, and our scientific community for their continuous support in making this portfolio a reality - we couldn’t have done it without you! With your support in place, we are confident these journals will become as impactful and successful as our book publishing program and bring us closer to a more open (science) future.”
\n\n
We invite you to visit the journals homepage and learn more about the journal’s Editorial Boards, scope and vision as all three journals are now open for submissions.
\n\n
Feel free to share this news on social media and help us mark this memorable moment!
\n\n
\n'}],latestNews:[{slug:"intechopen-supports-asapbio-s-new-initiative-publish-your-reviews-20220729",title:"IntechOpen Supports ASAPbio’s New Initiative Publish Your Reviews"},{slug:"webinar-introduction-to-open-science-wednesday-18-may-1-pm-cest-20220518",title:"Webinar: Introduction to Open Science | Wednesday 18 May, 1 PM CEST"},{slug:"step-in-the-right-direction-intechopen-launches-a-portfolio-of-open-science-journals-20220414",title:"Step in the Right Direction: IntechOpen Launches a Portfolio of Open Science Journals"},{slug:"let-s-meet-at-london-book-fair-5-7-april-2022-olympia-london-20220321",title:"Let’s meet at London Book Fair, 5-7 April 2022, Olympia London"},{slug:"50-books-published-as-part-of-intechopen-and-knowledge-unlatched-ku-collaboration-20220316",title:"50 Books published as part of IntechOpen and Knowledge Unlatched (KU) Collaboration"},{slug:"intechopen-joins-the-united-nations-sustainable-development-goals-publishers-compact-20221702",title:"IntechOpen joins the United Nations Sustainable Development Goals Publishers Compact"},{slug:"intechopen-signs-exclusive-representation-agreement-with-lsr-libros-servicios-y-representaciones-s-a-de-c-v-20211123",title:"IntechOpen Signs Exclusive Representation Agreement with LSR Libros Servicios y Representaciones S.A. de C.V"},{slug:"intechopen-expands-partnership-with-research4life-20211110",title:"IntechOpen Expands Partnership with Research4Life"}]},book:{item:{type:"book",id:"1641",leadTitle:null,fullTitle:"Cholera",title:"Cholera",subtitle:null,reviewType:"peer-reviewed",abstract:'Cholera, a problem in Third World countries, is a complicated diarrheal disease caused by the bacterium Vibrio cholerae. The latest outbreak in Haiti and surrounding areas in 2010 illustrated that cholera remains a serious threat to public health and safety. With advancements in research, cholera can be prevented and effectively treated. Irrespective of "Military" or "Monetary" power, with one\'s "Own Power", we can defeat this disease. The book "Cholera" is a valuable resource of power (knowledge) not only for cholera researchers but for anyone interested in promoting the health of people. Experts from different parts of the world have contributed to this important work thereby generating this power. Key features include the history of cholera, geographical distribution of the disease, mode of transmission, Vibrio cholerae activities, characterization of cholera toxin, cholera antagonists and preventive measures.',isbn:null,printIsbn:"978-953-51-0415-5",pdfIsbn:"978-953-51-6937-6",doi:"10.5772/2102",price:119,priceEur:129,priceUsd:155,slug:"cholera",numberOfPages:232,isOpenForSubmission:!1,isInWos:null,isInBkci:!1,hash:"afebfab613bc604ea17f98395e290eeb",bookSignature:"Sivakumar Joghi Thatha Gowder",publishedDate:"March 28th 2012",coverURL:"https://cdn.intechopen.com/books/images_new/1641.jpg",numberOfDownloads:25152,numberOfWosCitations:9,numberOfCrossrefCitations:5,numberOfCrossrefCitationsByBook:1,numberOfDimensionsCitations:14,numberOfDimensionsCitationsByBook:2,hasAltmetrics:1,numberOfTotalCitations:28,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"May 9th 2011",dateEndSecondStepPublish:"June 6th 2011",dateEndThirdStepPublish:"October 11th 2011",dateEndFourthStepPublish:"November 10th 2011",dateEndFifthStepPublish:"March 9th 2012",currentStepOfPublishingProcess:5,indexedIn:"1,2,3,4,5,6",editedByType:"Edited by",kuFlag:!1,featuredMarkup:null,editors:[{id:"118572",title:"Dr.",name:"Sivakumar Joghi",middleName:null,surname:"Thatha Gowder",slug:"sivakumar-joghi-thatha-gowder",fullName:"Sivakumar Joghi Thatha Gowder",profilePictureURL:"https://mts.intechopen.com/storage/users/118572/images/2492_n.jpg",biography:"Dr Sivakumar Gowder received his academic training and carried out his research in institutions of high academic ranking in India and the US (University of Madras -Chennai, India; All India Institute of Medical Sciences -New Delhi, India; UT Southwestern Medical Center -Dallas, TX, US; LSH Health Sciences Center, Shreveport, LA, US and University of Pittsburg School of Medicine, Pittsburgh, PA, US). Before working for Qassim University, he worked as a faculty member at the Medical Universities in West Indies. Sivakumar has won prizes and awards in different levels of his academic career. He has developed his own research methods and techniques relevant to his research disciplines and has published several journal articles and book chapters. Sivakumar has also edited many books. Currently, he serves as an author and editor of books; editor in chief for an international journal; editorial member and reviewer for journals; fellow and advisory board member of international organizations and external examiner of doctoral thesis work for international universities. 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\n
1. Introduction
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Heparin-induced thrombocytopenia (HIT) as a severe adverse drug effect occurs when patients receive heparin anticoagulant to prevent and treat thromboembolic diseases. Depending on the length of heparin, HIT occurs in ≤5% of patients receiving high molecular weight unfractionated heparin, whereas ≤1% of patients receiving low molecular weight heparin. In HIT, the immune system considers the platelet factor 4 (PF4), which is altered in its conformation after binding to heparin (H), to be “foreign” and the formation of anti-PF4/H antibodies (aPF4/P Abs) occurs. Upon binding to the PF4/H complex, these antibodies activate circulating platelets and other cells. Typically, 5–14 days after heparin exposure, platelet count reduces to <15–20 × 109 cells/L (or a > 50% decrease in platelet count). HIT can result in thromboses such as deep vein thrombosis (DVT), pulmonary embolism (PE), occlusion of a limb artery, acute myocardial infarct, stroke, and a systemic reaction or skin necrosis. Importantly, there is also a subset of anti-PF4/Heparin antibodies (aPF4/H Abs) which, in the absence of heparin, can lead to symptomatic thrombocytopenia and excessive vascular thrombosis. The extreme sequela of the aPF4/H Abs is autoimmune HIT, in which individuals develop multiple vessel occlusions without drug exposure.
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2. Heparin-induced thrombocytopenia
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Heparin-induced thrombocytopenia (HIT) is a distinct clinicopathologic syndrome caused by platelet-activating antibodies that bridge between complexes of platelet factor 4-Heparin (PF4/H) and platelets [1, 2] or endothelial cells [3]. Human platelets are anuclear cell fragments with discoidal shapes of 1–2 μm, originating from the cytoplasm of bone marrow megakaryocytes [4]. Platelets store PF4 (a positively charged tetramer belonging to CXC chemokine family) in their alpha granules. Non-activated platelets release some PF4s (Figure 1A) [5]. When patients take anticoagulant polyanions like heparin, some of these heparins bind to PF4s forming ultra large PF4/H complexes (Figure 1B). Binding of heparin to PF4 induces a conformational change in PF4s [6, 7, 8] which results in an expression of new epitopes. Some patients develop antibodies against these neoepitopes (Figure 1B). These human-derived antibodies are defined as anti-PF4/H antibodies (aPF4/P Abs). Each resulting multimolecular complex of an aPF4/P Ab to a PF4/H complex contains two platelet binding sites, that is, one is on the PF4/H complexes, and another one is on the Fc part of the IgG which binds to FcγRIIa receptors [9, 10] on platelet membranes (Figure 1C). Cross-linking of the platelet Fc receptor results in platelet activation that releases more PF4s and facilitates formation additional ultra large immune complexes. These complexes rapidly recruit other platelets into the prothrombotic process (Figure 1D). Activation of platelets leads to the loss of platelets, massive platelet activation and even triggers clotting cascade that results in thrombin generation and increases the risk for vessel occlusions such as venous thrombosis, myocardial infarction or stroke [7, 11, 12]. The binding strength of a blood thrombus has major biological importance. A recent study could determine directly the binding strength between two platelets at single platelet level [13]. The binding force increases proportionally to the degree of platelet activation but reduces with blockade of specific platelet receptors. The method provides major perspectives for testing and improving the biocompatibility of new materials, quantifying the effect of drugs on platelet function, and assessing the mechanical characteristics of acquired/inherited platelet defects.
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Figure 1.
Cartoon illustrates the formation of heparin-induced thrombocytopenia (HIT). (A) Non-activated platelets secrete several PF4s. (B) with heparin exposure, PF4s form ultra large complexes with long heparins that induce conformational changes in PF4s. Some patients develop aPF4/H Abs against PF4 neoepitopes. (C) Human-derived aPF4/H Abs bound PF4/H complexes can adhere to platelet membrane. (D) Fc parts of the antibodies link fcγRIIa receptors on platelet membranes that leads to platelet aggregation/activation. Adapted from [5].
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Heparins are the glycosaminoglycans (GAGs) containing glucosamine residues with a high degree of sulfation that dictates their biological activities [6, 14, 15]. GAGs play an important role in the sequestration of plasmodium falciparum-infected red blood cells in the microvascular endothelium of different tissues [16, 17]. Their pharmacologic activity is mediated by a chemically unique pentasaccharide sequence present in about 30% of all heparin molecules. Heparin behaves like simple entropic spring forces, which is produced by sugar rings of heparin flipping to more energetic and more extended conformations [18, 19]. Both low and high molecular weight heparins are available. The source of high molecular weight unfractionated heparin (UFH) influences the risk of HIT, i.e. bovine UFH is more likely to cause HIT than porcine UFH [20, 21, 22]. Besides UFH, the low molecular weight heparins (LMWH) produced from UFH by chemical fractionation, are widely used in clinical practice [23, 24, 25, 26, 27]. Due to their shorter chain length, LMWHs show less strong interaction with PF4. UFH and PF4 form ultra large complexes (ULCs) when both are present approximately at an optimal 1:1 ratio. Comparing with UFH, LMWHs form smaller complexes with PF4. ULCs showed a greater capacity to promote platelet activation than small complexes [28]. These differences in complex formation between UFH and LMWHs translate into their risk for inducing HIT in patients. LMWHs induce HIT about 10 times less frequent than UFH, but HIT still randomly occurs during treatment with LMWHs [29, 30, 31, 32].
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2.1. Boundary between antigenic and non-antigenic heparin
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PF4/heparin (or polyanions) complexes can become antigenic or not depend on heparin (or polyanion) characteristics. To expose neoepitopes on PF4s relevant for HIT, at least three bonds between the polyanion and PF4 in the PF4/polyanion complex should be formed [33]. These neoepitopes on the PF4/polyanion complexes then allow binding of the aPF4/H Abs. The binding strength of the single sulfate groups on the polyanion with the PF4 does not differ among polyanions with a different degree of sulfation [33]. The quantity and resulting density of sulfate groups on the polyanion chain determine their molecular effects on PF4 [33]. In particular, the polyanions which bind to PF4 tetramer with less than three sulfate bonds are unable to expose the neoepitope [6, 34]. The results suggest an existence of a boundary between antigenic (risk for HIT) and non-antigenic heparins (non-risk for HIT). This boundary has been determined by applying multiple techniques such as atomic force microscopy-based atomic force microscopy (AFS) [35], isothermal titration calorimetry (ITC) [6], or circular dichroism (CD) spectroscopy in combination with enzyme-linked immunosorbent assay (ELISA) [7] (Figure 2).
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Figure 2.
Determination of the boundary between antigenic and non-antigenic heparins. (A) Rupture force histograms fitted by Gaussian distributions show narrow widths (green arrows) for heparins ≤6-mer (HO05, HO06) and wider widths for longer heparins ≥8-mer (HO08, HO012, HO016). (B) ITC demonstrates lower enthalpy for short heparins (black dotted box) and higher enthalpy for long heparins (red-dotted box), while a saturation is found at ~11-mer. (C) Combination of CD spectroscopy and EIA shows that a boundary between short and long heparins is at ~30% ß-sheet contents and OD ~0.5. Overall, the boundary is determined between 8- and 11-mer. Adapted from [8, 35, 48].
\n
AFS shows that both numbers of specific rupture events and magnitude of rupture forces rise with an increase of heparin length, suggesting that long heparins form with PF4 more bonds than short ones [35]. A larger variation of the rupture forces for long heparins ≥8-mer compared with short heparins ≤6-mer was observed (Figure 3A). The enthalpy obtained by ITC rises with the increase of heparin length and reaches maximal values at ~11-mer (Figure 3B) [36]. Combining the results obtained by AFS and ITC, the boundary between non-antigenic and antigenic heparin is determined between 8- to 11-mer. This boundary is further clarified by CD spectroscopy which is sensitive to the secondary structure and folding properties of proteins [37]. For PF4/H interactions, the change in β-sheet content was found to be ≤30% for short heparin and >30% for long heparins (Figure 3C). By ELISA, optical density (OD) was ≤0.5 for short heparin, while OD was >0.5 for longer heparins (>8-mer) (Figure 3C). The OD of 0.5 is the threshold to determine whether a heparin used in the ELISA was able to support binding of aPF4/H Abs. The combination of β-sheet content and OD values show clearly a dissimilar behavior between short and long heparins (Figure 3C).
\n
Figure 3.
Model describing different binding pathways between short and long heparins when interacting with PF4 tetramers. (A) Depending on heparin length, short heparin can bind to one PF4 tetramer, (B) whereas long heparin bridges two PF4s and forces them closer to each other at a distance l < L, merging two hydrophobic surfaces of PF4s (green shaded area). Adapted from [35].
\n
Linking together all the results from AFS, ITC, CD spectroscopy and ELISA, the boundary between antigenic and non-antigenic heparin has been proved between 8- and 11-mer. These findings are particularly important to understand PF4-Heparin binding processes and to develop new heparin-derived drugs with reduced risk for adverse immune reactions. Combination of these techniques allows better characterizing heparin boundary.
\n
\n
\n
2.2. Kinetic properties and binding model of PF4/H complexes
\n
Thermodynamic and kinetic parameters of the ligand-receptor interactions can be obtained by applying the Bell-Evans [38] or the Friddle [39, 40] models. The models show that the faster the molecule is pulled, the higher the rupture force will be measured. For simple ligand-receptor interaction in which multiple interactions are not involved, the rupture force (F) increases proportionally to the logarithmic loading rate. Even though there is some variation in the parameters obtained by these two models, Bell-Evans model is still a powerful tool to determine the kinetics of ligand-receptor interactions [41, 42]. For the PF4/H system, the PF4 tetramer is considered as one antigen or the interaction between heparin and PF4 is formed by a single bond, and therefore, applicable to the Bell-Evans model [35]. Short heparins show higher koff values than long heparins, indicating that PF4/long heparin complexes are more stable than PF4/short heparin complexes (Table 1). With binding affinity (KA) measured by ITC [6], the thermal on-rate (kon = koff. KA) of PF4/H complexes is calculated. The short heparins bind to PF4s with ~10–20 times faster than long heparins [35].
\n
\n
\n
\n
\n
\n\n
\n
Parameter
\n
HO06
\n
HO12
\n
HO16
\n
\n\n\n
\n
koff (s−1)
\n
1.64
\n
1.40 × 10−2
\n
1.10 × 10−4
\n
\n
\n
kon(M−1 s−1)
\n
0.41 × 105
\n
0.32 × 104
\n
0.55 × 103
\n
\n
\n
ΔE (kBT)
\n
−0.49
\n
4.27
\n
9.12
\n
\n\n
Table 1.
Thermodynamic and kinetic parameters of PF4/heparin interactions [35].
\n
PF4-Heparins interaction is more complex than general ligand-receptor interactions which are attributed to the electrostatic attraction. Based on special features in force-distance curves and the magnitude of PF4/H binding forces, it has been proved that long heparin bound PF4s creating additional PF4-PF4 bonds [35]. Long heparins form two types of bonds with PFs, i.e. (i) PF4-Heparin and (ii) PF4-PF4 bond, whereas short heparins form only one PF4-Heparin bond. Even though the concept of the PF4-PF4 bond, in general, cannot be accepted because PF4s are highly positive proteins, and therefore, strongly repel each other. However, when forming a complex with a highly negative charged heparin, the positive-charged PF4 is probably neutralized that results in a mergence of two hydrophobic PF4 surfaces [34]. Based on these findings, a model for PF4-heparin interaction has been proposed (Figure 3). Due to their sizes, the short heparins simply bind to a single PF4 tetramer (Figure 3A), whereas the long heparins neutralize positive charges on PF4 tetramers and switch the charges between two PF4 tetramers from a repulsion to an attraction. Heparin reacts as a catalyst that forces two PF4 molecules close to each other within a distance l (l < L), resulting in two merged hydrophobic PF4 surfaces (Figure 3B). This way of interacting results in the extremely stable PF4/H complexes, especially for long heparins.
\n
A sequence in the formation of PF4/heparin complexes has been identified. When a long heparin comes closely to PF4s, heparin forms first bonds with positively charged clusters on PF4s and then it pulls closely PF4s together to form PF4-PF4 bonds [35].
\n
Based on bond energy (ΔE), quantitative information of bond transitions can be calculated following the study of Wang et al. [43]. The bond transitions of short heparin from the weak positive-charged area on PF4 release energy, whereasPF4-PF4 bonds consume energy [35]. In contrast to short heparin, the bond transitions of long heparins in both cases release energy, while their interactions with the positively charged clusters consume energy (Table 1). Based on energy level, PF4-PF4 interaction is attributed to be stronger than the bonds between heparin and non-clusters of positive-charged areas on PF4. However, PF4-PF4 interaction is weaker than the interaction between heparin and clusters of positive charges on PF4.
\n
\n
\n
\n
3. Antibody-induced thrombocytopenia
\n
Immunocomplexes composed of aPF4/P Abs and PF4/polyanion (PF4/P) complexes on the platelet surface induce platelet aggregation via cross-linking FcγRIIA receptors [9, 10]. They also bind to the surface of endothelial cells and monocytes [44, 45, 46], inducing procoagulant activity [44, 47]. Heparin-induced thrombocytopenia has been well understood. Recent studies reported that a subset of human-derived autoantibodies in some patients also can induce thrombocytopenia in a heparin-similar manner.
\n
\n
3.1. Human-derived HIT antibodies
\n
All aPF4/P Abs bind to immobilized PF4/P complexes in ELISA [48], but only some of them activate platelets in functional assays, e.g. the heparin-induced platelet activation assay (HIPA) [48] or the serotonin release assay (SRA) [49, 50]. Human-derived aPF4/P Abs compose of three groups, i.e. the antibodies do not activate platelets in HIPA test (group-1 Abs); the antibodies activate platelets in HIPA but require heparin (group-2 Abs); the antibodies activate platelets even without heparin (group-3 Abs) (Figure 4). Group-3 Abs developed from patients who had clinical autoimmune HIT, and therefore, they are defined as ‘autoantibodies’ [51].
\n
Figure 4.
Different reaction patterns of aPF4/H antibodies. (Right) pyramid shows antibodies of three groups, all positive in EIA. Group-1 (blue) do not activate platelets (HIPA -); many Abs belonging to group-2 do not induce HIT (yellow), some induce HIT (gold) and others induce HIT with thrombosis (dark red). Recent studies found an additional small subset of patient’s content autoimmune group-3 HIT Abs (red). (Left) visualization of platelet aggregates-induced by different antibody groups imaged by scanning electron microscopy in the presence (+) or absence (−) of heparin: Group-1 abs induce (bottom left) only small aggregates reflecting the background platelet activation; group-2 Abs (middle, left) cause large aggregates only in the presence of heparin; group-3 Abs induce large aggregates even in the absence of heparin. Same scale bar for all images. Adapted from [55].
\n
\n
3.1.1. Characteristics of human-derived HIT antibodies
\n
In contrast to the detailed characterization of the PF4/polyanion complexes, little is known about the features of aPF4/H Abs in the pathogenesis of HIT. Exploring the characteristics of HIT antibodies bears a potential to better understand general mechanisms of antibody-mediated autoimmunity HIT. However, there is a difficulty in subtracting the pathogenic HIT antibody directly from human sera because both pathogenic and non-pathogenic antibodies bind to the PF4/H antigen.
\n
Newman et al. reported that aPF4/P Abs can be purified by PF4-agarose beads [3]. Later in 2000, Amiral et al. described that affinity purification of aPF4/P Abs resulted in a mixture of IgA, IgM, and IgG [52]. In this mixture, only a subset of IgG antibodies activates platelets [49]. Contamination of IgA, IgM, and IgG antibodies will increase the difficulty in characterizing aPF4/P Abs. To overcome this limitation, two-step affinity chromatography has currently established to separate aPF4/H Abs from HIT patients sera. By this method, aPF4/P Abs from sera of patients were successfully isolated for three antibody groups. The purified Abs showed similar characteristics as the original serum in EIA and HIPA. Titrating the antibodies in ELISA, all antibody groups show an increase of OD with increasing antibody concentration (Figure 5A). OD values are highest for group-3, followed by group-2 and then group-1 Abs. In the HIPA test, group-1 Abs did not cause platelet aggregation up to a concentration of 89.7 μg/mL; group-2 Abs induced platelet aggregation from concentrations ≥43.5 μg/mL, but only in the presence of heparin; while group-3 Abs induced platelet aggregation from concentrations ≥5.2 μg/mL independently of heparin (Figure 5B). This is consistent with previous findings that chondroitin sulfate plays an important role in platelet activation by PF4/P Abs, even in the absence of heparin [53, 54].
\n
Figure 5.
Dose-dependent binding of aPF4/P Abs to PF4/H complexes in EIA and HIPA. (A) EIA shows the lowest OD of control IgG (black) as the background reaction, follow by group-1 (dark cyan), higher for group-2 (blue) and highest for group-3 (red) Abs. (B) HIPA tests show a dependence of platelet aggregation on antibody concentration: Group-1 Abs do not activate platelets, neither in the absence (−), nor in the presence (+) of reviparin up to a concentration of 89.7 μg/mL (dark cyan); group-2 Abs (blue) induced platelet activation (red part) at concentrations ≥44 μg/mL but only in the presence of reviparin; group-3 Abs (red) activated platelets at much lower concentrations (≥5 μg/mL) either in the presence or absence of reviparin. n = 5 sera per group. Adapted from [55].
\n
\n
\n
3.1.2. Binding strength of human-derived HIT antibodies
\n
The binding strength between the antibody and PF4/H complexes is determined by AFS. A single aPF4/H Abs is immobilized on the cantilever and then approach to the PF4/H complexes coated on a solid phase for interacting and measuring of their binding strength. Weakest binding forces were measured for monoclonal antibody KKO mimicking human HIT antibodies (43.6 ± 8.8 pN, gray) and group-1 Abs (44.0 ± 8.1 pN, green), higher for group-2 Abs (60.6 ± 15.4 pN, blue) and highest for group-3 Abs (72.4 ± 26.2 pN, red). Statistics showed no significant difference between KKO and group-1 Abs (p = 0.877), significant difference between group-1 and group-2 Abs (p < 0.001), or between group-2 and group-3 Abs (p = 0.006)) (Figure 6) [55].
\n
Figure 6.
Binding characteristics of aPF4/H Abs. Each dot shows the mean and standard error of the rupture force for each respective antibody from five sera per group. (A) KKO and (B) group-1 Abs bind to PF4/H complexes with a binding strength mostly ≤60 pN (black dotted line), while (C) group-2 and (C) group-3 Abs consist of Abs with different binding forces. (D) a subset of group-3 Abs binds to PF4/H complexes with rupture forces higher than 100 pN (red-dotted line). Adapted from [55].
\n
Group-3 Abs bound to PF4/H complexes with much higher binding energy (ΔH = −2.87 ± 2.06 × 108 cal/mol) than group-2 Abs (ΔH = −2.90 ± 0.4 × 104 cal/mol), and their dissociation constant (KD) (~5.3 nM) was about two orders of magnitude lower than that of group-2 Abs (~1.7 × 102 nM). The binding strength of PF4 to heparin ~150 pN [35] is higher than that between group-3 Abs and PF4/H complexes (mostly lower than 150 pN) [55]. Besides that, the group-3 Abs have a highest binding affinity (koff = 0.12 s−1) as compared with group-1 Abs y (koff = 15.6 s−1), group-2 Abs (koff = 2.0 s−1), or KKO (koff = 2.2 s−1). The lowest thermal off-rate specify that multiplexes induced by PF4/H complexes with group-3 Abs are more stable than those formed with other antibody groups. Furthermore, KKO and group-1 Abs contain antibodies with similar characteristics, and therefore, they interacted rather uniformly with PF4/H complexes. This has been clarified by obtaining the relatively small differences among the rupture forces (<60 pN, Figure 6A-B) measured from different cantilevers. However, group-2 Abs contain different types of antibodies as observed by a large variation of all binding forces (~40% exceeded 60 pN). For group-3 Abs, the variation of binding force is even higher than that of group-2 Abs as shown by ~44% of all binding forces ≥60 pN and ~15% even exceeded 100 pN. The low variability in binding forces of KKO and group-1 Abs has been attributed to the fact that they contain homogeneous antibodies, whereas the patient’s sera such as group-2 and group-3 Abs contained polyclonal mixtures of aPF4/P Abs differently reactive. Among these human-derived Abs, it has been proved that the group-2 contains also antibodies reacting like group-1 Abs, while group-3 is highly complicated as it composes of not only antibodies reacting like group-1 and group-2 Abs but also some additional super strong reactive antibodies. The aPF4/H Abs show different reactivity patterns under various pH and ionic strength conditions [56].
\n
\n
\n
3.1.3. Autoimmune antibodies cluster PF4
\n
The autoimmune group-3 Abs activate platelets in the absence of polyanions because they can self-cluster PF4 to form PF4/group-3 antibody complexes without the need of heparin [55]. This characteristic of autoimmune group-3 Abs has been proved by various methodologies:
\n
First, the autoimmune group-3 Abs could be purified from the patient’s sera using a PF4-column (instead of the PF4/H column). Hardly any PF4/P Abs were obtained from control and group-1 sera; group-2 sera showed a minimally increased IgG yield. When these antibodies are concentrated to 50 μg/ml, only antibodies purified from group-3 sera activated platelets in the HIPA. The results indicate that group-3 sera contain antibodies with PF4 specificity, which activate platelets.
\n
Next, only autoantibodies (group-3) show strong interaction with PF4 alone by ITC. When the antibodies were tested at the same concentration of 62.5 nM, KKO and group-2 Abs did not interact with PF4, while group-3 Abs interacted strongly. As the interaction between group-3 Abs and PF4 alone showed two binding sites (stoichiometry n = CABS/CPF4 = 0.53 ± 0.003), these Abs can cluster two PF4 molecules. Increasing antibody concentration did not improve binding of KKO to PF4 whereas group-2 Abs weakly interacted with PF4. However, the binding energy released by group-2 Abs is only 0.1% compared to that of group-3 Abs.
\n
Consistently, PF4 or PF4/H EIA show that group-3 Abs bound quite strong to PF4 while other antibodies did not even though all Abs bound much stronger to PF4/H complexes than to PF4 alone. By AFS, group-1 and group-2 Abs showed much less binding events to PF4 than to PF4/H complexes, while the super-reactive group-3 Abs showed similar bindings. In addition, the interaction forces of group-3 Abs purified via a PF4-column with PF4/H complexes showed the highest range of binding forces (~100 pN). These results again indicate that group-3 Abs bind strongly to PF4 alone independently from heparin, while bindings of group-1 and group-2 Abs are heparin-dependent.
\n
By dynamic light scattering (DLS), group-3 Abs formed the largest complexes with PF4 as compared to other antibody groups with even larger size than PF4/H complexes further indicate that group-3 Abs can cluster PF4.
\n
The binding energy generated by the interaction of group-3 Abs with PF4 in the ITC experiments (ΔH = −3.5 ± 0.86 × 107cal/mol) is much higher than the energy released when a 16-mer heparin interacts with PF4 (ΔH = −7.26 ± 1.36 × 103 cal/mol) [6]. As 16-mer heparin can force two PF4 molecules together, based on their high energy release, group-3 Abs most probably also can force two PF4 tetramers together. In addition, the negative entropy of the reaction (ΔS = −11.7 ± 2.8 × 104 cal/mol. K) is attributed to PF4 conformational change when forming complexes with the group-3 Abs. By DLS, the size complexes formed by PF4 and group-3 Abs increases significantly when the group-2 Abs are added, indicating that group-3 Abs, induce a conformational change in PF4 and the resulting PF4/group-3 antibody complexes allow binding of group-2 Abs in the same way as polyanions do.
\n
Altogether, PF4 form large complexes with heparin and allow group-2 Abs bind and induce platelet aggregation/activation (Figure 7A-C). Importantly, a subset of group-3 Abs cluster PF4 and the resulting PF4/Group-3 antibody complexes also allow binding of group-2 Abs and enhance platelet aggregation/activation even stronger than heparins do as shown by tighter and denser aggregates (Figure 7D-F).
\n
Figure 7.
Group-3 Abs cluster PF4 and enhance platelet activation. (A) PF4 form large complexes with heparin and the resulting PF4/H complexes allow (B) group-2 Abs bind and (C) induce platelet aggregation/activation. (D) a subset of group-3 Abs cluster PF4 forming PF4/Group-3 antibody complexes which also (E) allow binding of group-2 Abs and (F) enhance platelet aggregation/activation evidenced by tighter and denser aggregates compared to (C). Adapted from [55].
\n
\n
\n
\n
3.2. HIT-like antibodies
\n
Many studies in HIT have been performed with human aPF4/P Abs isolated from patient plasma because only one monoclonal antibody (KKO) mimicking human HIT antibodies did exist until recently [57]. KKO activates platelets [58] and monocytes [59] in vitro and in vivo by cross-linking FcγRIIa. KKO has been used to unravel the pathogenesis of HIT and is the basis for a recently FDA approved plasma-based antigen assay (HIT-HemosIL) for detection of PF4/P antibodies [60, 61]. KKO mimics the biological activity of human aPF4/P Abs [62] and has been used to understand the binding characteristics of an antibody recognizing PF4/P complexes and activating platelets [62, 63]. Binding of a non-HIT antibody RTO to PF4 monomers prevents PF4 tetramerization and inhibits KKO and human HIT IgG-induced platelet activation/aggregation in vitro, and thrombus progression in vivo. The probability and the interaction force of KKO binding to PF4 are much greater than those of RTO, while KKO/PF4 dissociation rate was approximately 10-fold slower than RTO/PF4 [62, 63], indicating that KKO binds stronger than RTO and KKO/PF4 complexes are more stable than RTO/PF4.
\n
KKO interacts with PF4/H complexes coated platelets with ~4-fold higher forces than with PF4/H complexes coated on a solid phase, while RTO shows only a minor change [64]. The different binding forces strongly indicate that PF4 and PF4/H complexes either expose different epitopes or allow better access of platelet-activating Abs to their epitope when PF4 bound to the platelet surface compared to the presentation of PF4/H complexes on a solid phase. Most probably, PF4/H complexes exhibited the antigenic site differently depending on the bound substrates [53]. The findings provide an explanation for the surprising observation that KKO interact relatively weak when PF4/H complexes are immobilized on a solid phase [55], while it strongly activates platelets in functional assays. It is unresolved, which additional binding partners on the platelet surface interfere with the conformational change or different presentations of PF4/H complexes. Nevertheless, chondroitin sulfate [53] and polyphosphates [65] are potential candidates, as they interact with PF4.
\n
However, KKO is a mouse IgG2b antibody (an absent subclass in humans) [66], while the platelet-activating aPF4/P Abs present in HIT plasma samples are predominantly IgG1. KKO behaves differently from human aPF4/P Abs, i.e. it binds only weakly to PF4/H complexes coated on a solid phase [64]. Recently, a chimeric monoclonal aPF4/H Abs with a human Fc fragment (5B9) has been developed [67]. The 5B9 antibody has been demonstrated to fully mimic the cellular effects of human HIT Abs [10, 68].
\n
\n
\n
\n
4. Diagnosis of HIT
\n
Immunologic assays, such as polytypic ELISA, IgG-specific ELISA, and particle gel immunoassay (PGI) have a sensitivity, are widely used to detect aPF4/H Abs in the diluted human sera because of their high sensitivity (≥95%) and the fast turn-around. However, only ~50% of aPF4/H Abs detected by antigen tests are clinically irrelevant. The results from positive immunologic assays may lead to an overtreatment for HIT that can result in serious consequences, such as venous limb gangrene or fatal hemorrhage [69]. However, immunologic assays are still powerful tools to rule-out patients with HIT. The cut-off optical intensity (OD) in ELISA was defined at 0.5. An ELISA test showing OD > 0.5 is normally suspected to contain aPF4/H Abs. To increase the specificity of clinically relevant antibodies, a higher OD cut-off for the antigen tests (e.g. OD > 1.0) had been suggested [70].
\n
Even though functional assays such as by serotonin release assay (SRA) [71] or HIPA [72] have a sensitivity of ~90% which is slightly lower than the immunologic assays, these tests show a much better specificity of over 90%. For the better identifying HIT, it is recommended that a positive PF4/H ELISA should prompt confirmatory testing by functional assays [73]. However, the functional assays are only available in specialized laboratories and not available in many countries. Therefore, many physicians rely on the results of antigen tests, especially for the first days after clinical suspicion of HIT has been raised until the results of the functional assay is reported.
\n
Besides immunologic assays and functional assays, the chemiluminescent immunoassays such as HemosIL AcuStar HIT-IgG and HemosIL AcuStar HIT-Ab have been recently introduced. These methods are relatively faster (~30 minutes) than the immunologic assays (hours) and showed extremely high sensitivity (~100%) [74]. The assays seem to be ideal for ruling out HIT. Another study used a colorimetric test to detect HIT based on the interaction between platelets and tetrazolium-based indicator dye [75]. The authors reported the quality of detecting HIT is from 96 to 100% agreement with the functional assay C-SRA.
\n
\n
\n
5. Conclusion
\n
Not only heparin but also autoimmune antibodies induce thrombocytopenia. Large antigenic complexes formed between PF4 and either heparin or antibody activate platelets, cause a prothrombotic and result in a variety of thromboembolic and systemic consequences. In autoimmune HIT, aPF4/P Abs activate platelets in the absence of heparin. These antibodies are highly reactive. They can self-cluster PF4-molecules forming antigenic complexes and allow binding of otherwise aPF4/P Abs. The resulting immunocomplexes induce massive platelet activation in the absence of heparin. The source and length of heparins play an important role in inducing thrombocytopenia. Improvement of heparin quality together with discovering new non-heparin drugs should be highly desirable. Patients who are suspected of HIT need to be immediately stopped heparin exposure and switched to an alternative anticoagulant. Regarding patients with antibody-induced thrombocytopenia, the level of complication is much higher than the general heparin-induced thrombocytopenia. To date, these human-derived antibodies are hardly controlled, and therefore, efforts in the field would be appreciated. Clinical tests for detecting HIT antibodies as well as autoimmune HIT antibodies must be improved to achieve an appropriate identification of clinical HIT patients.
\n
\n
Acknowledgments
\n
This work was supported by the Deutsche Forschungsgemeinschaft (DFG, Germany) (NG 133/1-1).
\n
Conflict of interest
The authors declare no competing financial interests.
\n',keywords:"heparin-induced thrombocytopenia, HIT, mechanism, binding force, PF4, antibody",chapterPDFUrl:"https://cdn.intechopen.com/pdfs/59102.pdf",chapterXML:"https://mts.intechopen.com/source/xml/59102.xml",downloadPdfUrl:"/chapter/pdf-download/59102",previewPdfUrl:"/chapter/pdf-preview/59102",totalDownloads:1160,totalViews:180,totalCrossrefCites:0,totalDimensionsCites:0,totalAltmetricsMentions:0,introChapter:null,impactScore:0,impactScorePercentile:12,impactScoreQuartile:1,hasAltmetrics:0,dateSubmitted:"July 15th 2017",dateReviewed:"January 8th 2018",datePrePublished:null,datePublished:"March 7th 2018",dateFinished:"January 31st 2018",readingETA:"0",abstract:"In the last two decades, heparin was widely used as an anticoagulant. Besides numerous advantages of heparin, some patients with heparin administration suffer from a side effect, the so-called heparin-induced thrombocytopenia (HIT), which can result in thromboses such as deep vein thrombosis, pulmonary embolism, occlusion of a limb artery, acute myocardial infarct, stroke, and a systemic reaction or skin necrosis. The basic on HIT complication have been investigated and led to clinical insights. Recent studies provided detail mechanisms among binding partners in HIT; especially, it has been shown that not only heparin but also a subset of antibody induce thrombocytopenia. In this chapter, insights into both heparin- and antibody-induced thrombocytopenia will be discussed and the novel mechanism of the autoimmune HIT caused by a subset of antibodies will be introduced.",reviewType:"peer-reviewed",bibtexUrl:"/chapter/bibtex/59102",risUrl:"/chapter/ris/59102",book:{id:"6273",slug:"thrombocytopenia"},signatures:"Thi-Huong Nguyen",authors:[{id:"217383",title:"Dr.",name:"Thi Huong",middleName:null,surname:"Nguyen",fullName:"Thi Huong Nguyen",slug:"thi-huong-nguyen",email:"nguyent@uni-greifswald.de",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",institution:{name:"University of Greifswald",institutionURL:null,country:{name:"Germany"}}}],sections:[{id:"sec_1",title:"1. Introduction",level:"1"},{id:"sec_2",title:"2. Heparin-induced thrombocytopenia",level:"1"},{id:"sec_2_2",title:"2.1. Boundary between antigenic and non-antigenic heparin",level:"2"},{id:"sec_3_2",title:"2.2. Kinetic properties and binding model of PF4/H complexes",level:"2"},{id:"sec_5",title:"3. Antibody-induced thrombocytopenia",level:"1"},{id:"sec_5_2",title:"3.1. Human-derived HIT antibodies",level:"2"},{id:"sec_5_3",title:"3.1.1. Characteristics of human-derived HIT antibodies",level:"3"},{id:"sec_6_3",title:"3.1.2. Binding strength of human-derived HIT antibodies",level:"3"},{id:"sec_7_3",title:"3.1.3. Autoimmune antibodies cluster PF4",level:"3"},{id:"sec_9_2",title:"3.2. HIT-like antibodies",level:"2"},{id:"sec_11",title:"4. Diagnosis of HIT",level:"1"},{id:"sec_12",title:"5. Conclusion",level:"1"},{id:"sec_13",title:"Acknowledgments",level:"1"},{id:"sec_16",title:"Conflict of interest",level:"1"}],chapterReferences:[{id:"B1",body:'Greinacher A. Heparin-induced thrombocytopenia. The New England Journal of Medicine. 2015;373(19):1883-1884\n'},{id:"B2",body:'Warkentin TE, Greinacher A. Heparin-Induced Thrombocytopenia. 4th ed. 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Laboratory testing for heparin-induced thrombocytopenia. Journal of Thrombosis and Thrombolysis. 2000;10:S35-S45\n'},{id:"B72",body:'Greinacher A. Heparin-induced thrombocytopenia. New England Journal of Medicine. 2015;373(3):252-261\n'},{id:"B73",body:'Warkentin TE. n. Vol.1, (September 2002), pp.63-72. Heparin-induced thrombocytopenia. Current Hematology Reports. 2002\n'},{id:"B74",body:'Legnani C, Cini M, Pili C, Boggian O, Frascaro M, Palareti G. Evaluation of a new automated panel of assays for the detection of anti-pf4/heparin antibodies in patients suspected of having heparin-induced thrombocytopenia. Thrombosis and Haemostasis. 2010;104(2):402-409\n'},{id:"B75",body:'Prechel MM, Escalante V, Drenth AF, Walenga JM. A colorimetric, metabolic dye reduction assay detects highly activated platelets: Application in the diagnosis of heparin-induced thrombocytopenia. 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1. Introduction
Malaria remains the leading cause of mortality in the endemic regions of Sub-Saharan Africa and Southeast Asia. The WHO estimates that in 2020, there were 241 million malaria cases globally with 627,000 associated deaths, an increase from years prior [1, 2]. Additionally, although progress continues to be made in some regions, such as Southeast Asia reporting a 78% reduction in malaria cases, Sub-Saharan Africa accounts for more than 90% of the global malaria incidence. Children 5 years and younger are highly susceptible to malaria with a 77% mortality rate [1, 3, 4].
Malaria is caused by the apicomplexan parasite, Plasmodium sp. The five main species able to cause disease in humans are Plasmodium falciparum, Plasmodium vivax, Plasmodium ovale, Plasmodium knowlesi and Plasmodium malariae. Plasmodium falciparum (P. falciparum) is the most prevalent and the most lethal of these [5]. Malaria infection is established when an infected female anopheles mosquito takes a blood meal from humans and introduces sporozoites into the bloodstream which invade human liver hepatocytes. The sporozoites replicate in the hepatocytes for 5–8 days and can generate thousands of merozoites which are released to infect the erythrocytes [6, 7]. Asexual replication occurs in the erythrocytes where parasites undergo several nuclear divisions and generate between 6 and 30 daughter merozoites per infected erythrocyte [6]. Symptomatic malaria is characterized by the sustained parasitization and destruction of red blood cells as well as the host immune responses. Thus, drug development efforts are directed toward the intra-erythrocytic asexual stage of the parasite.
Over the centuries-long battle with malaria, treatment has been developed from both natural product and chemical synthetic sources. Quinine, originally isolated from the bark of the cinchona tree, gave way to its synthetic counterparts, chloroquine, amodiaquine, and mefloquine, among others [8, 9]. Likewise, artemisinin was isolated from the Chinese herb, Artemisia annua (Qinghao), and gave way to the synthetic artemisinin derivatives now used in the first line malaria treatment, artemisinin-based combination therapy (ACT) [10]. However, resistance to these antimalaria treatments, have slowed global efforts toward the eradication of malaria [11, 12, 13, 14, 15]. Resistance development has led to increased efforts to identify novel antimalarials, including the recent development of the RTS,S malaria vaccine, providing a potential positive outlook for malaria control [16, 17]. New drug development efforts for malaria must identify novel targets, their mechanisms of action, and must be well tolerated with minimal side effects. Short treatment periods are essential to promote compliance and to minimize resistance development.
Transition state mimicry is a promising approach to malaria drug discovery. The technique utilizes features of transition state structure of essential target enzymes to produce tight binding and highly selective analogs [18]. Transition state analogs (TSAs) against the purine and pyrimidine pathway enzymes of P. falciparum have resulted in inhibitor molecules with the potential for new antimalarial combination therapies.
Rapid nucleic acid synthesis during intra-erythrocytic parasitic growth makes purine and pyrimidine synthesis in Plasmodium parasites an important target for novel drug development. Although both host and parasite share some enzymes in these pathways, key differences allow for Plasmodium-specific and selective molecules.
2. Purine metabolism
Plasmodium parasites are purine auxotrophs as they do not express the enzymes necessary to perform de novo purine synthesis [19, 20]. Substantial new DNA and RNA synthesis occurs during the asexual cycle of Plasmodium, requiring large amounts of purine and pyrimidine nucleotide precursors and the energetic contribution from ATP. Parasites therefore rely completely on the host erythrocytes for the salvage of purine nucleosides and nucleobases for the synthesis of adenylate and guanylate compounds. Hence the parasite genome contains highly expressed genes corresponding to purine transporters and purine salvage enzymes [21]. Human erythrocytes contain high (millimolar) concentrations of adenylate nucleotides, but Plasmodium parasites have no kinase to phosphorylate adenosine molecules or ribosyltransferases to salvage adenine from the host. Therefore, purine salvage in Plasmodium requires ATP catabolism, through hypoxanthine formation, by essential enzymes making up the purine salvage pathway (Figure 1) [22]. The central concept in targeting purine salvage pathways for Plasmodium involves prevention of hypoxanthine and inosine formation in both erythrocytes and parasites and/or prevention of hypoxanthine or inosine conversion to purine nucleotides in the parasites.
Figure 1.
Purine salvage pathway in P. falciparum and human erythrocytes. In P. falciparum, but not in humans, there is a link to the polyamine pathway via MTA.
Purine precursors formed in erythrocytes must gain entry to the parasite for conversion to nucleotides. Pathways proposed to facilitate the uptake of purine nucleosides and nucleobases across the parasite membrane include; (1) saturable or facilitated transport of adenosine, (2) non-saturable, channel like transport and (3) the tubovesicular membranes induced by parasitization of the host erythrocytes [23, 24]. A major path for purine uptake is known to be the equilibrative nucleoside transporters (ENTs) that promote nucleoside and nucleobase transport into the parasite. Four classes of ENTs have been identified in Plasmodium falciparum and Plasmodium vivax (PfENT 1-4, PvENT 1-4) [24, 25, 26, 27, 28]. Inhibitors designed against PfENT1 prevent the uptake of purines and inhibit the growth of parasites in culture [29, 30]. The essentiality of the purine salvage pathway to the survival of Plasmodium parasites, makes targeting the component enzymes attractive for novel antimalarial therapies. These include adenosine deaminase (ADA), purine nucleoside phosphorylase (PNP) and hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT). Antimalarial validation of these targets has been confirmed by potent inhibitors that cause purine starvation and death of the parasites.
2.1 Adenosine deaminase (ADA, EC 3.5.4.4)
Plasmodium falciparum ADA (PfADA) catalyzes the zinc-dependent irreversible deamination of adenosine and deoxyadenosine to form inosine and deoxyinosine. PfADA can also catalyze the hydrolysis of 5′-methylthioadenosine (MTA) to 5′-methylthioinosine (MTI), a reaction that is distinctly absent from the mammalian ADA [31]. MTA is a product of the polyamine biosynthetic pathway, establishing that polyamine synthesis also plays a role in the purine salvage pathways for Plasmodium parasites. Parasites must metabolize MTA to prevent feedback inhibition of the polyamine biosynthetic pathway. Polyamine synthesis is also critical to the parasites since they cannot salvage polyamines from the host erythrocytes [see below]. Coformycin and 2′-deoxycoformycin are transition state or intermediate-like powerful inhibitors of ADA. They were originally identified as natural products and inhibit both human and parasite enzymes with picomolar affinities (Figure 2) [32]. 2′-Deoxycoformycin (Pentostatin) is an FDA-approved treatment for hairy cell leukemia, where the accumulation of adenosine or 2′-deoxyadenosine, leads to an unbalanced nucleotide pool, initiating apoptosis in B and T cells [32]. Unfortunately, there is insignificant inhibition of Plasmodium parasite growth by these inhibitors.
Figure 2.
Transition state analogs of HsADA and PfADA. The 5′-functionalized inhibitors provide improved selectivity for the parasite enzyme over the human enzyme. 5′-methylthio inhibitors are more potent thant the 5′-propylthio and 5′-phenylthio inhibitors.
The dual specificity of PfADAs serves to guide the synthesis of novel PfADA inhibitors with a high degree of selectivity for the parasite enzyme. In addition, the transition state structures of PfADA and human ADA (HsADA) are similar but distinct, with PfADA displaying an early transition state and a more intermediate-like transition state for HsADA, corresponding to their distinct catalytic turnover numbers (kcat) (Figure 3). These differences are reflected by the state of protonation at N1 of the purine ring and the N1-H bond distances. The differences permit the design and synthesis of Plasmodium-specific transition state analogs [33]. Earlier work reported the synthesis of 5′-methythiolcoformycin (MT-coformycin), a sub nanomolar (Ki* = 0.43 nM) transition state analog inhibitor of plasmodium ADA with over a 20,000-fold selectivity over the human ADA. Other functionalized 5′- and 2′-deoxycoformycin molecules also retained selectivity for the Plasmodium enzyme (Figure 2) [31, 32]. MT-coformycin and coformycin inhibited the growth of plasmodium parasites in culture when MTA is used as the sole purine source, clearly demonstrating the deaminase as an essential step in conversion of MTA toward hypoxanthine [31, 34]. This effect is not observed when adenosine or MTI is used as a purine source, demonstrating that an intact polyamine pathway is not required for purine salvage in Plasmodium species. The high degree of selectivity of the 5′-functionalized coformycins demonstrates the importance of utilizing substrate specificity and transition state analysis to design target-selective inhibitors.
Figure 3.
Reaction scheme and transition state structure of ADA.
The enzyme responsible for forming purine bases from nucleosides in the purine salvage pathway is PNP, catalyzing the reversible phosphorolysis of inosine to hypoxanthine and ribose 1-phosphate [35]. Plasmodium PNP substrate specificity includes MTI, to generate hypoxanthine and 5-methylthioribose 1-phosphate [36]. MTI appears to be a parasite specific metabolite and has not been identified in mammalian pathways [37]. Hypoxanthine serves as a key precursor to nucleotide synthesis; therefore, the parasite adopts multiple pathways to generate hypoxanthine. PNP also converts guanosine and 2′-deoxyguanosine to form guanine and (2-deoxy) ribose 1-phosphate (Figure 1). PNP displays specificity for 6-oxopurines with adenine containing purine rings having no effect as substrates or inhibitors [31].
Plasmodium falciparum PNP (PfPNP) and human PNP (HsPNP) have distinct structures and catalytic sites and share only ~20% sequence similarity [38]. Structurally, PfPNP is more similar to PNP from bacterial sources and is homohexameric, displaying a trimer of dimer structure, while HsPNP like other mammalian PNP is trimeric (Figure 4). Like PfADA, PfPNP displays a broad substrate specificity that includes 6-oxopurine nucleosides and 5′-methylthio 6-oxopurine nucleosides as substrates. These differences form the basis for generation of species-specific inhibitors with discrimination for the Plasmodium enzyme.
Figure 4.
A, Homohexameric structure of PfPNP displaying a trimer of dimer conformation (1NW4). B, trimeric structure of HsPNP (1PF7).
The transition state structures of PfPNP and HsPNP, reveal similar catalytic mechanisms involving the formation of an oxocarbenium ion at the transition state (Figure 5). However, the two catalytic site interactions differ in the hydrogen bond and van der Waals interactions formed with the leaving group. The result is a more constrained active site environment at the transition state for PfPNP than for HsPNP [39]. The Immucillin-H (ImmH) transition state analog was designed to resemble the transition state structure of bovine PNP and inhibits that enzyme with a Ki* of 23 pM. Although there are distinct differences between the transition state structures of HsPNP, PfPNP and bovine PNP, ImmH is a potent inhibitor of all three enzymes, with HsPNP Ki* = 56 pM and PfPNP Ki* = 600 pM [40, 41]. DADMe-ImmH and DADMe-ImmG were developed as second generation PNP inhibitors designed to mimic the fully dissociative transition state, and thereby more closely resemble the transition state structures of HsPNP and PfPNP [42]. The introduction of a methylene bridge increases the bond distance between the 9-deazahypoxanthine (DADMe-ImmH) or the 9-deazaguanine (DADMe-ImmG) and the riboxocarbenium mimic. Additionally, the 9-deazapurine scaffold increases the pKa to permit protonation at N7 and the cation at N1′ mimics the cationic charge at this position of the transition state to more closely mimic the transition state. These features of the transition state translate to an improvement in the dissociation constant for HsPNP from 56 pM for ImmH to 16 pM for DADMe-ImmH and to 2 pM for DADMe-ImmG. Transition state analogs bind tightly to their cognate enzymes by converting the catalytic potential into thermodynamic binding. The kcat for HsPNP is approximately 50 times greater than for PfPNP, and this is reflected in the affinity of the inhibitors for the two enzyme species. Thus, the dissociation constant (Ki*, the Kd after slow onset inhibition) for PfPNP is 500 pM for DADMe-ImmH and is 670 pM for DADMe-ImmG, reflecting its lower catalytic potential [42, 43, 44].
Figure 5.
Reaction scheme and transition state structure of PNP (upper panel). Lower panel; transition state analogs of PNP with dissociation constants for HsPNP and PfPNP. Methylthio-Immucillin-H provides over 100-fold selectivity for the parasite enyzyme.
Inhibition of both HsPNP and PfPNP is required to cause a purine-less death of Plasmodium falciparum parasites in culture, as formation of hypoxanthine in erythrocytes or in the parasite will meet the needs for purine base salvage. In cell cultures, HsPNP inhibition occurs at low concentrations of PNP inhibitors with inhibition of PfPNP occurring at higher concentrations. Inhibition of both PNPs is thus required for the antiparasitic effects of the immucillins, with the IC50 values corresponding to the molar concentration of PNP present [45, 46]. The purine-less death induced by PNP inhibitors targets hypoxanthine production. Confirmation of hypoxanthine starvation as the mechanism of action, and the lack of other targets from this therapy, comes from the full restoration of parasite growth when hypoxanthine is added to culture media [45].
The genetic deficiency of HsPNP is known to cause a T cell immune deficiency by causing accumulation of 2′-deoxyguanosine (dGuo), a metabolite completely dependent on HsPNP for its recycling. Without HsPNP, activated T cells transport dGuo and convert it to dGTP which can reach toxic levels for DNA polymerase. In humans, activated T cells are therefore sensitive to the loss of HsPNP function with no effect observed in naive T cells, B cells, and other mammalian cells [47, 48]. The selective toxic effects of HsPNP inhibition in human T cells is slow to develop, taking a year or more to be symptomatic in newborns. The more rapid effect in Plasmodium suggests that inhibiting both human and parasite PNPs for antimalaria therapy will have minimal side effects. Furthermore, oral administration of DADMe-ImmG clears Plasmodium falciparum parasites from infected Aotus monkeys [49]. Although not yet tested in clinical trials for malaria, the companion compound, DADMe-ImmH, is also a powerful inhibitor of both Hs- and PfPNPs and has been in extensive phase 2 clinical trials for gout [50]. PNP inhibitors as an antimalarial therapy block hypoxanthine formation in both erythrocytes and parasites. Human blood hypoxanthine is present at approximately 1 μM, while Aotus blood was found to have approximately 40 μM hypoxanthine [49]. Therefore, PNP inhibition as an antimalarial therapy is expected to be a more effective in humans than in the Aotus test animal where several days of oral drug therapy were required to clear the parasites [49]. This hypothesis remains to be tested.
Other selective inhibitors remain an attractive option when developing novel antimalarial therapeutics. Therefore, using the dual specificity of PfPNP for MTI, the transition state analog, 5′-methylthio-immucillin-H (MT-ImmH) was synthesized [46]. MT-ImmH has a 100-fold specificity for PfPNP over HsPNP, underscoring the importance of exploring transition state chemistry and substrate specificity to develop selective inhibitors (Figure 5) [46].
Hypoxanthine is the essential purine precursor for Plasmodium and HGXPRT is an essential enzyme in the Plasmodium purine salvage pathway, as the only enzyme to incorporate hypoxanthine into the parasite nucleotide pool. HGXPRT catalyzes the phosphoribosylation of hypoxanthine, guanine, and xanthine using 5-phosphoribosyl-α-D-1-pyrophosphate (PRPP) to generate inosine 5′-monophosphate (IMP), guanosine 5′-monophosphate (GMP) and xanthine 5′-monophosphate (XMP) respectively [51]. Pyrophosphate (PPi) is generated as the second product of the reaction (Figure 6). IMP serves as the precursor for the synthesis of both adenine and guanine-based nucleotides. The single distinction in substrate specificity between the Plasmodium HGXPRT (PfHGPRT) and the human HGPRT (HsHGPRT) is the inability of the human homolog to use xanthine as a substrate [52]. Xanthine in humans is converted to uric acid by xanthine oxidase and is the terminal end of purine metabolism, followed by its excretion into the urine [53, 54].
Figure 6.
Reaction scheme for HG(X)PRT. PfHGXPRT has a unique substrate specificity for xanthine. HsHGPRT does not.
PfHGXPRT has been identified as the most highly expressed purine salvage enzyme in P. falciparum and has been reported to have the highest activity compared to other enzymes of purine salvage identified by Reyes and coworkers [55]. Parasites may have evolved to use hypoxanthine as a key nucleotide precursor because it is the end-product of purine catabolism in human erythrocytes, with subsequent oxidation to uric acid occurring in other tissues. The high amounts of intracellular phosphates in erythrocytes favors the activity of PNP to produce hypoxanthine [55, 56]. Since its identification, PfHGXPRT has been the most targeted enzyme for purine salvage in P. falciparum. Detailed kinetic and structural analyses have led to the design of many inhibitors of PfHGXPRT activity. Challenges in targeting PfHGXPRT include its similarities to HsHGPRT and the need for the anionic phosphate group, making cell access a problem [57, 58, 59, 60].
PfHGXPRT and HsHGPRT share 76% sequence similarity and 44% sequence identity [61]. Active site residues in contact with substrates and inhibitors are conserved (Figure 7). Purine nucleoside analogs and transition state analogs have been investigated and many prove to be good inhibitors of both PfHGXPRT and HsHGPRT. Acyclic nucleoside phosphonates (ANPs) however provide the greatest selectivity for the Plasmodium enzyme compared to phosphate-based compounds (Figure 8) [62, 63]. Crystal structures of HsHGPRT in complex with ANP and free PfHGXPRT suggest that the increased in selectivity when the phosphate groups are replaced with phosphonates is attributed to tighter hydrogen bonding around the phosphonate group and flexibility of the 6-oxo binding pocket [60].
Figure 7.
Two-dimensional ligand interaction map showing A, Immucillin-G phosphate bound to HsHGPRT (1BZY) and B, Immucillin-H phosphate bound PfHGXPRT (1CJB). Active side residues that make contact with inhibitors are similar in both enzymes.
Figure 8.
First generation and second generation transtion state analogs for HG(X)PRT. Dissociation constants for HsHGPRT and PfHGXPRT are shown for each inhibitor. The second generation analogs provide greater selectivity for the PfHGXPRT. Lysophospholipid prodrug with biological activity against P. falciparum parasites in culture shown in lower panel.
TSAs are the tightest binding HG(X)PRT inhibitors reported to date. Although the first-generation transition state analogs, immucillin-G phosphate (ImmGP) and immucillin-H phosphate (ImmHP) were designed based on the proposed similarity of the transition state structure to other phosphoribosyltransferases, they bind potently but without discrimination for parasite or human HG(X)PRT (Figure 8) [41] and are subject to host enzymatic degradation by phosphomonoesterases. Structural analysis of TSAs bound to both HsHGPRT and PfHGXPRT as well as downfield proton chemical shift differences observed by NMR of bound inhibitors suggested that selectivity for PfHGXPRT may be achieved by substituting TSAs with electron-withdrawing or electron-donating groups to alter hydrogen-bonding distances [41]. Recently, the transition state structure of PfHGXPRT has been solved and provides detailed information on bond distances in the transition state [61]. With this knowledge, serinol-based mimics of the riboxocarbenium with a methylene bridge linking the oxocarbenium mimic to the 9-deazapurine ring were designed to mimic the bond distances in the transition state structure and synthesized. These compounds have proven to be the tightest and most selective inhibitors of PfHGXPRT, with Ki* values as low as 650 pM and selectivity indices for PfHGXPRT greater than 500-fold relative to HsHGXPRT [64, 65].
HGXPRT TSAs are phosphate or phosphonate-based compounds with a net negative charge at physiological pH, making them impermeable to cell membranes. Prodrug approaches are therefore required for their biological activity. Prodrugs of PfHGXPRT inhibitors involve ANPs with intramolecular esters in the form of lysophospholipid prodrugs, designed to be activated by intracellular phospholipase C, or phosphoramidate prodrugs with a multistep activation mechanism [66]. Prodrug approaches have been validated in several FDA-approved nucleoside antiviral drugs [67]. The prodrug approaches improve the biological activities of TSAs of PfHGXPRT to give anti-parasite IC50 values in the micromolar range (2–7 μM) against P. falciparum parasites cultured in human blood (Figure 8) [65]. With a Ki* of 650 pM, disparity between the Ki* for the enzyme and the micromolar IC50 values of lysophospholipid prodrugs suggests that more efficient prodrug approaches are needed to fully capture the tight-binding capabilities of TSAs intracellularly. PfHGXPRT is a challenging target because of the multiple cellular and membrane barriers between an oral drug and the intracellular parasites. However, similar challenges have been overcome for antivirals and they provide a lesson for prodrug approaches. In summary, PfHGXPRT is a challenging but valid target for the development of novel antimalarials and TSAs currently provide the most promising approach.
2.4 Downstream enzymes of purine salvage
Given how essential purine salvage is to the survival of Plasmodium parasites, it is remarkable that the pathway evolved to rely on only three major enzymes, ADA, PNP and HGXPRT, based on the genome interpretation and protein expression levels in the parasites [55]. As concentration of free guanine in human blood is very low, it is not feasible for Plasmodium spp. to synthesize guanosine monophosphate (GMP) using HGXPRT. [51] Two enzymes downstream of HGXPRT, inosine 5′-monophosphate dehydrogenase (IMPDH) and GMP synthetase (GMPS) work sequentially to synthesize GMP (Figure 1) [68]. These two enzymes control GMP synthesis in most organisms [69]. IMPDH catalyzes the NAD+ dependent reaction that coverts IMP to xanthine monophosphate (XMP) and NADH [70]. GMPS is composed of two domains, an ATP pyrophosphatase domain and a glutamine amidotransferase (GAT) domain [68, 71]. By this mechanism, GMPS catalyzes the ATP-dependent irreversible amination of XMP on carbon 2 to form GMP. Inhibitors of both IMPDH and GMPS have been shown to have antimalaria properties and have been the subject of recent drug development [21, 68].
Mycophenolic acid is an IMPDH inhibitor and inhibits P. falciparum parasites in culture with an IC50 of about 5 μM [21, 72, 73]. Bredinin is an inhibitor that has been shown to inhibit both IMPDH and GMPS [68, 74] and suggest that both IMPDH and GMPS are targets to explore for novel antimalarials. Although the IMP to GMP pathway involves phosphorylated intermediates, both mycophenolic acid and bredinin are non-phosphorylated natural products (or derivatives) that provide orally available access to tissues. Both mycophenolic acid and bredinin are used in immune suppression, and they have not been useful as antimalarials.
2.5 Purine salvage and polyamine synthesis
Polyamines are synthesized by the transfer of propyl amino groups from decarboxylated S-adenosylmethionine to putrescine to form spermidine (one transfer) and spermine (two transfers) [75]. MTA is the product of each transfer in the polyamine biosynthetic pathway. MTA is also a substrate for PfADA, whereby it is deaminated to methylthioinosine. These steps provide a path for this abundant product of the polyamine pathway to be channeled into the into the purine salvage pathway [76]. Polyamines are present at high amounts in the intraerythrocytic stages of Plasmodium spp., which can perform both de novo synthesis and salvage of polyamines [76, 77]. Given that parasites can only perform salvage of purines, the valuable purines used in the polyamine pathway are economically recycled. MTA is converted by the action of PfADA to produce MTI. MTI is a substrate for PfPNP to form hypoxanthine and methylthioribose 1-phosphate. MTI is not found in human metabolism and recent studies have suggested that MTI production by Plasmodium falciparum in infected humans leads to activation of human Toll-like receptor 8 (TLR8), a signal for the stimulation of host innate immunity [37]. This connection provides an interesting link to the potential use of PfPNP inhibitors as a potential therapeutic in human malaria. MTI is removed from P. falciparum metabolism exclusively by PfPNP as HsPNP does not use MTI as substrate. Therefore, inhibition of purine salvage via PfPNP will increase MTI, increase signaling from TLR8 and have an immune stimulatory effect for the clearance of infected erythrocytes. Crosstalk between the polyamine pathway and purine salvage in Plasmodium parasites, together with the potential immunostimulatory effect of polyamine metabolites, underscores the importance of the polyamine pathway to purine salvage in Plasmodium parasites [37]. Inhibition of either the polyamine or the purine salvage pathways in Plasmodium parasites will be detrimental to parasites by; (1) purine starvation and death and (2) immune stimulation to promote clearance by host immune cells.
3. Pyrimidine metabolism
Opposite to the purine requirements of Plasmodium falciparum, the parasites are incapable of pyrimidine salvage from host erythrocytes; and pyrimidine synthesis requires the de novo pathway. This requirement contrasts with host cells with pathways for de novo synthesis and salvage of pyrimidine nucleotides [78]. Pyrimidine synthesis occurs by the action of six sequential enzymes to produce uridine monophosphate (UMP) as the primary product and a precursor to the other pyrimidine nucleotides (Figure 9) [79]. The enzymatic steps following UMP synthesis in P. falciparum are not well characterized, however, pyrimidine biosynthesis is linked to folate metabolism via the action of thymidylate synthetase (TS) [80]. Differences in the pathway between the human host and Plasmodium are important for selective targeting of Plasmodium parasites. In humans, the first three enzymes of the pyrimidine biosynthetic pathway, carbamoylphosphate synthetase II (CPS II), aspartate transcarbamoylase (ATC) and dihydroorotase (DHO) are a single protein, multiple domains, multifunctional enzyme complex, the CAD complex. In Plasmodium, CPS II, ATC and DHO are encoded as distinct genes, produce independent proteins and are organized on different locations on chromosomes, Ch. 13 for CPS II and ATC, and Ch. 14 for DHO [78, 81].
Figure 9.
De novo pyrimidine biosynthetic pathway. The pyrimidine biosynthetic pathway is conserved in Plasmodium and humans.
CPS II and ATC in P. falciparum are poorly characterized despite the role of CPS II as a key regulator of the pathway [20, 82]. The most thoroughly characterized enzymes of Plasmodium pyrimidine biosynthesis are dihydroorotate dehydrogenase (DHODH) and orotate phosphoribosyltransferase (OPRT) [83]. The transition state structures of human (HsOPRT) and Plasmodium falciparum OPRT (PfOPRT) have previously been solved and transition state analog inhibitors of both HsOPRT and PfOPRT have been designed (detailed below).
3.1 DHODH (EC 1.3.5.2)
DHODH is the fourth enzyme in the pyrimidine biosynthetic pathway and is expressed as two isozymes. The isozyme expressed from chromosome 7 codes for a mitochondria-associated DHODH and chromosome 9 expresses a cytosolic DHODH, where the mitochondrial form is essential for Plasmodium growth [84]. DHODH catalyzes the formation of orotate from dihydroorotate, a rate-limiting step for pyrimidine biosynthesis. Plasmodium spp., like the human host, express a type II DHODH, localized in the inner membrane of the mitochondrion [84, 85]. The electron transport chain provides quinone for the redox activity of DHODH. Recent studies have highlighted PfDHODH as a potential antimalaria target, showing that inhibiting PfDHODH leads to parasite death in culture and animal models [85, 86, 87].
Selective inhibition of PfDHODH has been achieved with DSM265, a triazolopyrimidine with a 4000-fold selectivity over mammalian DHODH. DSM265 has resulted in phase II clinical trials for the treatment of malaria, a first for any inhibitor of the parasite pyrimidine biosynthetic pathway. DSM265 inhibits both blood and liver stages of the malaria parasite with a biological efficacy similar to chloroquine in murine malaria models [87, 88, 89]. The pharmacokinetic analysis of DSM265 supported single dose therapy for use as a once weekly prophylactic [87]. Single dose administrations are considered important for patient compliance. Since the discovery of DSM265, DSM421, an improvement on DSM265 in terms of compound solubility, plasma stability and equal targeting of P. falciparum and P. vivax has also been reported in preclinical development [90]. Other studies have followed suit, using pharmacophore screening and structure-guided virtual studies to identify plasmodium specific DHODH inhibitors with submicromolar IC50 values [91, 92].
Pyrimidine biosynthesis is coupled to the mitochondrial electron transport chain (ETC) by DHODH and its requirements of quinones for catalytic activity (Figure 9). This coupling results in indirect inhibition of DHODH by ETC inhibitors such as atovaquone, an approved antimalarial often used in combination with proguanil. [93] Although DHODH and the linked mitochondrial ETC were promising targets with extensive discovery and development programs providing powerful inhibitors, the rapid development of resistance in clinical trials has hindered their development toward approved drugs [94, 95].
3.2 OPRT (EC 2.4.2.10)
Reduction of dihydroorotate by DHODH produces orotic acid and the following step, catalyzed by PfOPRT, catalyzes the production of the nucleotide orotidine monophosphate (OMP) from orotate and PRPP. OMP is subsequently converted to UMP by OMP decarboxylase (OMPDC). Plasmodium and human OPRTs differ in the early steps of the pyrimidine biosynthetic pathway. Thus, human OPRT is fused to OMPDC to form the single protein, bifunctional enzyme called UMP synthase [96]. In Plasmodium, OPRT and OPMDC have been purified as monofunctional enzymes however, there are recent reports suggesting that OPRT and OPMDC may exist as a heterotetrameric enzyme in Plasmodium with the potential for hydrolysis into the single enzymes during purification [83, 97, 98]. Detailed kinetic characterizations of both human and P. falciparum OPRTs (HsOPRT and PfOPRT respectively) have been reported and active site differences between the homologs have been characterized [83, 98].
The essential function of OPRT in pyrimidine biosynthesis and therefore for parasite proliferation has been demonstrated by the selective killing of cultured P. falciparum parasites by pyrazofurin, an inhibitor of OPRT with anti-parasite IC50 values of 6–20 μM [21, 99]. Additionally, 5-fluororotate and 5-aminouracil have inhibitory activity against PfOPRT with IC50 values of 42 nM and 8 μM respectively [21]. 5-Fluororotate selectively targets P. falciparum parasites in culture with an IC50 of 6 nM [100]. The mechanism of action is proposed to arise from an indirect effect of the toxic 5-fluorodeoxyuridylate metabolite on TS [101]. Plasmodium express TS as a single protein, multi-domain bifunctional enzyme with dihydrofolate reductase (DHFR) whereas TS exists as a monofunctional enzyme in mammals [21, 99, 100].
Transition state analysis of PfOPRT and HsOPRT reported an SN1 transition state with a partial dissociative orotate and riboxocarbenium ion character for both enzymes [102]. Despite differences in the enzyme organization, PfOPRT and HsOPRT possess similar transition state structures, where the ribocation is fully developed, the dianionic orotate is fully dissociated and there is weak participation of the pyrophosphate nucleophile (Figure 10) [102]. The transition state structures provided information for the design of several TSAs with nanomolar affinities for both HsOPRT and PfOPRT (Figure 10) [103]. Inhibition of HsOPRT might have potential utility for the treatment of autoimmune diseases and some malignant neoplastic diseases. However, no anti-parasitic activity was observed for any of the TSAs in cultured P. falciparum. The lack of activity was attributed to permeability barriers and target access, but no permeability studies have been reported [103]. PfOPRT remains a viable antimalarial target requiring further studies to elucidate and develop species-specific antimalarials.
Figure 10.
Upper panel: OPRT reaction scheme and transition state structure. The transition state structure is similar for PfOPRT and HsOPRT. It features a fully developed ribocation and a fully dissociated dianionic orotate with weak participation of the pyrophosphate. Lower panel: Transition state analogs synthesized and tested on PfOPRT and HsOPRT.
3.3 OMPDC (EC 4.1.1.23)
The decarboxylation of OMP to form UMP is catalyzed by OMPDC, the sixth enzyme in the de novo pyrimidine biosynthetic pathway [78]. OMPDC has achieved catalytic notoriety as it has been considered the most proficient pure protein catalyst, giving a catalytic reaction rate enhancement of approximately 1017 [104, 105]. Unlike other decarboxylases, OMPDC requires no metal ions or cofactors for its catalytic activity [105]. Recent studies indicate that Plasmodium falciparum OMPDC may form a tight heterotetrameric complex with OPRT (PfOMPDC2-PfOPRT2) with properties distinct from the bifunctional human OPRT [106, 107]. Although both are expressed and encoded by two separate genes, unique amino acid insertions in both proteins not present in the homologous proteins of other organisms allow the formation of the heterotetrameric complex [98, 106]. Additional support comes from the kinetic characterization of fused P. falciparum OPMDC and OPRT, expressed in Escherichia coli, where the catalytic efficiency of the fused enzymes was enhanced several orders of magnitude relative to either enzyme acting as monofunctional proteins, leading the authors to call the fusion a ‘super’ enzyme [97].
Nucleoside 5′-monophosphate analogs, 6-azauridine 5′-monophosphate (AzaUMP), allopurinol-3-riboside 5′-monophosphate (allopurinol MP), pyrazofurin 5′-monophosphate (pyrazofuin MP), and xanthosine 5′-monophosphate (XMP) are potent inhibitors of both human and parasite OMPDCs (Figure 11) [108]. These display a strong preference for PfOMPDC, with selectivity ranging from 11 to 150-fold preference for the parasite enzyme [108]. The differential binding of XMP has been investigated by comparing X-ray crystal structures of both enzymes. Few differences in active site residues were observed and specificity may be as a result in hydrogen bonding differences between ligand and active site residues (Figure 12). Another reported difference is the βα5-loop present at the dimerization interface, which displays different conformations and amino acid substitutions in PfOMPDC compared to HsOMPDC and is postulated to cause different active site rearrangements around the pyrimidine binding region [108]. The phosphate binding loop is also larger in HsOMPDC than in PfOMPDC [108]. Repositioning of the loop is a proposed requirement to bind XMP as observed for XMP-bound Pyrococcus horikoshii OMPDC [108]. Interestingly, the phosphate loop is the same size and shape in P. horikoshii OMPDC and PfOMPDC, therefore, these enzymes may bind XMP similarly. XMP is a 150-fold more potent inhibitor of PfOMPDC than of HsOMPDC [108].
Figure 11.
Nucleoside 5′-analogs of OPMDC showing inhibitory constants for both PfOMPDC and HsOMPDC. Inhibitors are highly selective, 11–150-fold for PfOMPDC over HsOMPDC. Values are as reported in [108].
Figure 12.
2-dimensional ligand interaction map of UMP bound A, PfOPMDC (6DSR) and B, HsOMPDC (2V30). Similar active site residues make contact with UMP.
No crystal structures of inhibitor bound PfOMPDC are available to understand the basis for inhibitor selectivity. However, the high preference of inhibitors for parasite OMPDC compared to the human enzyme indicates the possibility of developing potent and selective antimalarials. Inhibition of OMPDC has focused on nucleotide analogs, where the 5′-phosphate is a significant contributor to binding. A substantial barrier to drug development for nucleotide inhibitors is the anionic charge, as phosphoryl anions are membrane impermeable and phosphomonoesters are susceptible to phosphomonoesterases. Prodrug approaches, now being used in antiviral therapy for the delivery of phosphate nucleosides may be useful in development of OMPDC inhibitors.
3.4 DHFR (EC 1.5.1.3) and TS (EC 2.1.1.45)
De novo purine synthesis in the host and pyrimidine synthesis in both host and parasites are dependent on folate metabolites for the donation of carbon units. The pyrimidine biosynthetic pathway is linked to folate metabolism by TS, which requires 5,10-methylene tetrahydrofolate as a methyl donor for its catalytic activity [109]. DHFR and TS are both targets for human cancers [110]. In Plasmodium falciparum, DHFR and TS are expressed as a single protein, two-domain bifunctional DHFR-TS enzyme system, catalyzing the synthesis of deoxythymidylate monophosphate (dTMP) from dUMP and the NADPH-dependent reduction of dihydrofolate (DHF) to tetrahydrofolate (THF) [80]. The bifunctional coupling of adjacent steps in the pathway is proposed to cause “substrate channeling”, an efficient utilization of folate production for the synthesis of purines, pyrimidines, and amino acids [111, 112]. Since malaria parasites are unable to salvage pyrimidines, if metabolites or cofactors required by the folate pathway are cut off, thymidine biosynthesis is blocked, and parasites die from pyrimidine starvation [20, 80]. Thus, DHFR has been a frequently-drugged target for antimalaria therapy.
Pyrimethamine (PYR) and proguanil (PG) are approved antimalaria therapeutics which selectively target PfDHFR by several hundred-fold compared to the human counterparts [20, 113]. Mutations in the DHFR gene conferring resistance to both PYR and PG have led to diminished clinical effectiveness as single therapeutics for malaria. However, the combination of pyrimethamine with sulfadoxine (SP), which blocks dihydropteroate synthase, a folate precursor, act synergistically in the treatment of severe malaria [114]. Despite the prevalence of molecular mutations causing resistance to SP, WHO still recommends SP for intermittent preventative treatment for pregnant women and, often, in combination with amodiaquine, an inhibitor of Plasmodium heme polymerase, for seasonal malaria prevention [115]. PG is also used in combination with atovaquone, an inhibitor of the mitochondrion electron transfer chain, which also directly impacts pyrimidine biosynthesis because of its coupling to DHODH [116, 117].
Recent searches for additional inhibitors of DHFR-TS identified the antimicrobial triclosan to inhibit the proliferation of intraerythrocytic P. falciparum and is a 775 nM inhibitor of P. vivax DHFR. Triclosan displays a 20-fold selectivity for Plasmodium enzymes relative to human DHFR [118]. To preempt the development of resistance, Tarnchompoo and coworkers have developed hybrid inhibitors of DHFR with both flexible and rigid side chains that target both wild-type and multiple resistance P. falciparum [119]. Hybrid inhibitors include sub-nanomolar inhibitors of PfDHFR with 10-fold selectivity over HsDHFR [119]. Flexible cycloguanil analogs have been characterized that are low nanomolar inhibitors of multiple mutant PfDHFR [120]. Fragment-based screening approaches to inhibitor design have identified non-pyrimidine scaffolds that inhibit PfDHFR-TS with IC50 in the range of 28–695 μM and are highly selective over HsDHFR [121]. This approach offers a new avenue to tackle antifolate resistance and develop new antifolate antimalarials, but remains in development [121].
DHFR-TS is a validated target for antimalaria combination therapy by blocking synthesis of dTMP. The functional characteristics of DHFR-TS including its crystal structure and the structures of drug-resistant DHFR-TS allows for the identification and development of next-generation selective inhibitors of either catalytic domain that will address resistance to current antifolate drugs for malaria. New approaches are being explored, including peptide-based antagonists of PfDHFR-TS in the quest for novel and potent antifolate/anti-pyrimidine drugs [122].
4. Transition state analogs and drug development
Transition state theory postulates that chemically stable mimics of the enzymatic transition state will bind tightly to the target [123, 124]. All chemical, including enzymatic reactions, proceed via a transition state, a transient high energy species that lies along the reaction coordinate between reactants and products [125, 126]. Transition states are the balance point of a catalytic reaction where bonds are partially broken or formed and the probability for product formation and return to reactants is equal. Enzymes have evolved to highly favor the transition state geometry, hence their very large rate enhancement factors, typically of 1010 to 1015, a very large decrease in the activation energy of the reaction [18]. Chemically stable mimics of the transition state bind to and stabilize this favored enzymatic transition state geometry, capture part of the transition state energy and bind very tightly [18, 127, 128, 129]. Therefore, transition state analysis provides a powerful tool to develop molecules with high inhibitory potential for their target enzymes. Kinetic isotope effects (KIE) remain the best approach to study enzymatic transition states and together with quantum computational chemistry, allows the construction of electrostatic potential maps that provide information on the transition state structure [18]. This information enables the design of transition state analogs that bind with high fidelity to their cognate enzymes, millions of times tighter than substrates. Transition state analogs are some of the tightest binding enzymatic inhibitors and have the propensity to bind their target enzymes with dissociation constants in the nanomolar to femtomolar range (10−9 to 10−15 M) [123, 125, 126]. A feature of transition state analogs is the ability to convert the enzyme potential for catalysis into binding energy, therefore the more catalytically efficient the enzyme, the tighter the potential for transition state analog binding [127].
The immucillins are chemically stable transition state analogs that mimic the ribocation transition state of N-ribosyltransferases, enzymes that include PfPNP and PfHGXPRT, both important in purine salvage in P. falciparum [50]. Immucillin-H (also known as: BCX1777, Forodesine and Mundesine) (Figure 5) is an inhibitor of PNPs and has been approved in Japan for the treatment of resistant or relapsed peripheral T cell lymphoma (PTCL). Immucillin-A, as Galidesivir (also known as BCX4430) continues in phase I - II clinical trials for antiviral therapy. It is converted to the triphosphate form where it blocks RNA chain elongation in RNA viruses, including Yellow Fever and SARS-CoV2 [130]. DADMe-Immucillin-H (also known as: BCX4208, Ulodesine) has completed phase II clinical trials for gout, by virtue of its powerful inhibition of human PNP, an essential step in formation of uric acid in humans [50]. No immucillins or related transition state analogs for purine and pyrimidine pathways have yet entered clinical trials for antimalaria therapy though several are in preclinical testing [128].
The immucillins differ from traditional antibiotic discovery. Antibacterials are often discovered by cell wall screening or genomic targeting to inhibit cell wall synthesis [131]. Immucillins and related transition state analogs are designed to mimic the geometry of the transition state of their specific enzymes [129]. The resulting transition state analogs can be powerful tight-binding inhibitors with exquisite specificity for their targeted enzymes. Transition state inhibitor design is adding new candidates for drug development.
Immucillins in preclinical development as antimalaria drugs include the PNP-targeting DADMe-ImmG, a powerful inhibitor that is a picomolar inhibitor for both human and PfPNPs. Administration at nanomolar concentrations to parasites cultured in human erythrocytes caused purine-less death of P. falciparum. Testing in Aotus primates infected with P. falciparum at an oral dose of 50 mg/kg and dosed for 7 days gave robust parasite clearance and no parasitemia was detected by day 6 of treatment, along with complete inhibition of host and parasite PNP [49]. Recrudescent parasites appeared several days after treatment stopped. [49] Aotus monkeys, however, have approximately 40 μM circulating hypoxanthine, compared to approximately 1 μM in humans [49]. Therefore, clearing P. falciparum from Aotus is a more stringent test for the antimalaria efficacy of DADMe-ImmG than anticipated in human infections. DADMe-ImmH, the compound tested extensively in phase I and phase II clinical trials for gout, has a good safety profile in humans. DADMe-ImmH has an inhibitory potential for both HsPNP and PfPNPs similar to DADMe-ImmG and is a strong candidate to enter human clinical trials [50]. The efficacy of DADMe-ImmH has been established in clinical trials. A single oral dose of 0.5 mg/kg completely inhibits erythrocyte PNP with inhibition lasting for 120 days, the lifetime of the erythrocyte, making it a candidate for single-dose therapy of P. falciparum [132]. As inhibition of both human PNP and PfPNP is required for antimalarial properties, a single dose therapy has potential as a novel antimalarial, and as described below, has a reduced potential for the induction of resistance mutations.
4.1 Antimalaria resistance to transition state analogs
P. falciparum has developed resistance to most approved antimalarials, contributing to the difficulty of disease-eradication efforts worldwide. Rapid development of resistance has led to the clinical failure of several potent antimalaria drugs early in clinical trials and has resulted in World Health Organization recommendations for combination drug therapy for malaria treatment. Chloroquine which was once the gold standard treatment for malaria was widely used until the 1950s, when widespread resistance prompted its removal from the list of approved malaria therapeutics [133, 134]. Resistance soon followed for drugs such as atovaquone, pyrimethamine, proguanil, cycloguanil, sulfadoxine and sulfadoxine-pyrimethamine (SP) [133, 134]. Recently, resistance to artemisinin, one partner of the current first line treatment has been reported in the endemic regions of Sub-Saharan Africa and the Greater Mekong region of Southeast Asia [12, 14, 135, 136].
In the field, drug resistance is characterized by delayed-clearance of parasites from the blood of infected individuals [11]. Resistant parasites often have point mutations and gene amplification which can result in decreased drug uptake, increased efflux of drugs, target overexpression, target modification that reduces drug binding, and inactivation of a drug by modification (Figure 13) [134]. Knowledge of these mechanisms to resistance have prompted the search for novel and unique antimalaria compounds followed by investigation of the rates and mechanisms of resistance by subjecting cultured P. falciparum parasites to constant pressure of the novel compounds.
Figure 13.
Antimalarial resistance mechanism frequently employed by Plasmodium parasites to overcome drug pressure.
One such study involving DSM265, the PfDHODH inhibitor. Using a drug pressure of 3 × EC50 revealed a minimum inoculum for resistance (MIR) of 2 × 106 compared to 2 × 107 for atovaquone [87]. Selection of resistant parasites to DSM265 required 8 x EC50 of DSM265 compared to 33 × EC50 required to suppress atovaquone resistant parasites. The resistance mechanism in Dd2 clones (resistant to chloroquine, pyrimethamine and mefloquine) revealed both gene amplification of the DHODH gene and the G181C mutation that confers a 13-fold shift in IC50 of the drug compared to wild-type enzyme and 26-fold reduction of the EC50 in parasite growth assay. Kinetic characterization of the recombinant mutant enzyme revealed a 2-fold increase in the kcat, and Km was unchanged [87]. Resistance to DSM265 in Dd2 parasites developed rapidly with a profile similar to resistance development for atovaquone. However, resistance was not as easily generated at higher concentrations of DSM265 in other P. falciparum strains, questioning if resistance would develop in the field [90]. DSM265 in phase II clinical trials for malaria led to the appearance of resistance during the clinical trial phase [94].
In contrast to DSM265, resistance to transition state analogs is not easily generated. Loss of transition state features in the protein also generates severe catalytic penalties predicted to induce a fitness cost to the parasites. For example, treatment of cultured P. falciparum with DADMe-ImmG for 1 year in culture resulted in a 6-fold resistance (6-fold increase in IC50) [44]. The resistance was caused by a 6-fold amplification of wild-type PfPNP gene and protein levels. After 3 years of drug pressure (over 2136 clonal selections) in cultured cells, increased resistance was marked by a 12-fold amplification in the target PfPNP gene [44]. The 12-fold gene amplification was accompanied by two point mutations in PNP occurring in separate clones (M183L and V181D) to give rise to a 500-fold increase in the IC50. Interestingly, point mutations were only present in 50% of the transcripts and the remainders were wild type [44]. Recombinant expression of mutant PNP revealed that the kinetic properties were incompatible with the purine salvage function of PNP [44]. Particularly, the M183L mutation resulted in a 17,000-fold decrease in the catalytic efficiency (30-fold decrease in kcat) of the enzyme and a 39,000-fold decrease in affinity for DADMe-ImmG [44]. Therefore, the mutation reduced the catalytic efficiency and DADMe-ImmG efficacy by approximately the same amount, highlighting a key feature of transition state analogs. Mutations that prevent binding of the analog are expected to decrease catalytic activity to the same degree.
Resistance to DADMe-ImmG in P. falciparum arises by a unique mechanism. Hybrid PNP expression of 50% mutant M183L subunits and 50% wild-type subunits is proposed to generate hybrid hexameric PNPs demonstrating a 6-fold decrease in catalytic efficiency, as three of the six subunits are native. This hybrid hexameric construct of three native and three mutant subunits displays negative cooperativity in binding to DADMe-ImmG, always leaving a fraction of the native subunits free to catalyze the formation of hypoxanthine [137]. Therefore, in addition to 12-fold target overexpression and point mutations, P. falciparum also employs hybrid multimeric PNP to achieve robust resistance [137]. This example emphasizes the severe catalytic costs and threat to biological function that resistance to transition state analogs produces in the parasites. This slow development of resistance to DADMe-ImmG suggests that resistance may be slow to develop in the field.
Conditions for generating laboratory DADMe-ImmG-resistant P. falciparum clones are stringent, requiring up to 3 years of drug pressure on the same culture before robust resistance appeared. In the field, effective anti-parasitics clear parasites in a matter of days, and it is unlikely that parasites would encounter conditions of continuous drug pressure. Notwithstanding, these in vitro resistance assays help identify mechanisms and molecular markers of resistance and resistance phenotypes that will aid in recognizing resistance development in the field. Like most antimalarials, the proposed use of DADMe-ImmG or related transition state analogs would be in drug combinations to provide an extra layer of protection against development of resistance.
5. Summary and conclusion
During the intraerythrocytic stages, Plasmodium parasites proliferate rapidly and require extensive nucleic acid synthesis. The building blocks are either salvaged from the human host in the form of purines or synthesized de novo (pyrimidines). There are distinct differences between the purine and pyrimidine synthesis pathways of humans and the malaria parasites. Therefore, targeting these pathways can aid in the development of novel chemotherapeutic agents to combat emerging resistance to the current first line antimalarials. Transition state analogs against various purine and pyrimidine pathway enzymes are emerging as promising candidates for antimalarial therapy. The slow development of resistance and the unusual resistance mechanism employed by the parasites to drug pressure against transition state analogs may lead to slow resistance development in the field. Finally, the recent advances made with the RTS,S vaccine in endemic African countries is promising and point in the right direction for population control of malaria. However, until an effective vaccine is approved for widespread use, chemotherapeutic agents managing the disease and vector control measures are still needed.
Acknowledgments
Preparation of this manuscript was supported by NIH research grants (AI127807 and GM041916). We thank our collaborators in Dr. Peter C. Tyler’s group at Ferrier Research Institute, Victoria University of Wellington, New Zealand, for the synthesis of the Immucillins and transition state analogs.
Conflict of interest
The authors declare no conflict of interest.
\n',keywords:"purine salvage, pyrimidines, antimalarials, transition state analog inhibitors, resistance",chapterPDFUrl:"https://cdn.intechopen.com/pdfs/83000.pdf",chapterXML:"https://mts.intechopen.com/source/xml/83000.xml",downloadPdfUrl:"/chapter/pdf-download/83000",previewPdfUrl:"/chapter/pdf-preview/83000",totalDownloads:1,totalViews:0,totalCrossrefCites:null,dateSubmitted:"June 25th 2022",dateReviewed:"July 11th 2022",datePrePublished:"August 16th 2022",datePublished:null,dateFinished:"August 7th 2022",readingETA:"0",abstract:"Malaria continues to plague the endemic regions of sub-Saharan Africa and Southeast Asia. With the current development of artemisinin resistance and a risk of failure of the current first line therapies, there is a growing need for novel antimalarials. Purine and pyrimidine metabolism in Plasmodium is distinctly different from the human host, making these pathways valid targets for the development of novel antimalarials. Targeting key enzymes in these pathways with transition state analogs has provided high affinity inhibitors. Transition state mimicry can also provide selectivity for the parasite enzymes over the homologous enzymes of the human host. Resistance of Plasmodium parasites to current antimalarials will be compared to resistance development induced by transition state analogs inhibitors, a feature that may contribute to decreased resistance development. Tight binding and specificity of transition state analog inhibitors provide important features for novel antimalaria therapy with low toxicity and prevention of antibiotic resistance.",reviewType:"peer-reviewed",bibtexUrl:"/chapter/bibtex/83000",risUrl:"/chapter/ris/83000",signatures:"Yacoba V.T. Minnow and Vern L. Schramm",book:{id:"11576",type:"book",title:"Malaria - Recent Advances, and New Perspectives",subtitle:null,fullTitle:"Malaria - Recent Advances, and New Perspectives",slug:null,publishedDate:null,bookSignature:"Prof. Pier Paolo Piccaluga",coverURL:"https://cdn.intechopen.com/books/images_new/11576.jpg",licenceType:"CC BY 3.0",editedByType:null,isbn:"978-1-80356-792-1",printIsbn:"978-1-80356-791-4",pdfIsbn:"978-1-80356-793-8",isAvailableForWebshopOrdering:!0,editors:[{id:"76041",title:"Prof.",name:"Pier Paolo",middleName:null,surname:"Piccaluga",slug:"pier-paolo-piccaluga",fullName:"Pier Paolo Piccaluga"}],productType:{id:"1",title:"Edited Volume",chapterContentType:"chapter",authoredCaption:"Edited by"}},authors:null,sections:[{id:"sec_1",title:"1. Introduction",level:"1"},{id:"sec_2",title:"2. Purine metabolism",level:"1"},{id:"sec_2_2",title:"2.1 Adenosine deaminase (ADA, EC 3.5.4.4)",level:"2"},{id:"sec_3_2",title:"2.2 Purine nucleoside phosphorylase (PNP, EC 2.4.2.1)",level:"2"},{id:"sec_4_2",title:"2.3 Hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT, EC 2.4.2.8, EC 2.4.2.22)",level:"2"},{id:"sec_5_2",title:"2.4 Downstream enzymes of purine salvage",level:"2"},{id:"sec_6_2",title:"2.5 Purine salvage and polyamine synthesis",level:"2"},{id:"sec_8",title:"3. Pyrimidine metabolism",level:"1"},{id:"sec_8_2",title:"3.1 DHODH (EC 1.3.5.2)",level:"2"},{id:"sec_9_2",title:"3.2 OPRT (EC 2.4.2.10)",level:"2"},{id:"sec_10_2",title:"3.3 OMPDC (EC 4.1.1.23)",level:"2"},{id:"sec_11_2",title:"3.4 DHFR (EC 1.5.1.3) and TS (EC 2.1.1.45)",level:"2"},{id:"sec_13",title:"4. Transition state analogs and drug development",level:"1"},{id:"sec_13_2",title:"4.1 Antimalaria resistance to transition state analogs",level:"2"},{id:"sec_15",title:"5. 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Journal of Enzyme Inhibition and Medicinal Chemistry. 2021;36(1):198-206. DOI: 10.1080/14756366.2020.1854244'},{id:"B122",body:'Chaianantakul N, Sungkapong T, Supatip J, Kingsang P, Kamlaithong S, Suwanakitti N. Antimalarial effect of cell penetrating peptides derived from the junctional region of Plasmodium falciparum dihydrofolate reductase-thymidylate synthase. Peptides. 2020;131:170372. DOI: 10.1016/j.peptides.2020.170372'},{id:"B123",body:'Schramm VL, Horenstein BA, Kline PC. Transition state analysis and inhibitor design for enzymatic reactions. Journal of Biological Chemistry. 1994;269(28):18259-18262. [Online]. Available from: https://www.ncbi.nlm.nih.gov/pubmed/8034566; http://www.jbc.org/content/269/28/18259.full.pdf'},{id:"B124",body:'Schramm VL. Enzymatic transition states and transition state analog design. Annual Review of Biochemistry. 1998;67:693-720. DOI: 10.1146/annurev.biochem.67.1.693'},{id:"B125",body:'Schramm VL. Enzymatic transition states and transition state analogues. Current Opinion in Structural Biology. 2005;15(6):604-613. DOI: 10.1016/j.sbi.2005.10.017'},{id:"B126",body:'Schramm VL. Enzymatic transition states: Thermodynamics, dynamics and analogue design. Archives of Biochemistry and Biophysics. 2005;433(1):13-26. DOI: 10.1016/j.abb.2004.08.035'},{id:"B127",body:'Schramm VL. Transition states and transition state analogue interactions with enzymes. Accounts of Chemical Research. 2015;48(4):1032-1039. DOI: 10.1021/acs.accounts.5b00002'},{id:"B128",body:'Schramm VL. Transition states, analogues, and drug development. ACS Chemical Biology. 2013;8(1):71-81. DOI: 10.1021/cb300631k'},{id:"B129",body:'Schramm VL. Enzymatic transition state theory and transition state analogue design. The Journal of Biological Chemistry. 2007;282(39):28297-28300. DOI: 10.1074/jbc.R700018200'},{id:"B130",body:'Julander JG et al. An update on the progress of galidesivir (BCX4430), a broad-spectrum antiviral. Antiviral Research. 2021;195:105180. DOI: 10.1016/j.antiviral.2021.105180'},{id:"B131",body:'Thomson JM, Lamont IL. Nucleoside analogues as antibacterial agents. Frontiers in Microbiology. 2019;10:952. DOI: 10.3389/fmicb.2019.00952'},{id:"B132",body:'Gebre ST, Cameron SA, Li L, Babu YS, Schramm VL. Intracellular rebinding of transition-state analogues provides extended in vivo inhibition lifetimes on human purine nucleoside phosphorylase. The Journal of Biological Chemistry. 2017;292(38):15907-15915. DOI: 10.1074/jbc.M117.801779'},{id:"B133",body:'Tse EG, Korsik M, Todd MH. The past, present and future of anti-malarial medicines. Malaria Journal. 2019;18(1):93. DOI: 10.1186/s12936-019-2724-z'},{id:"B134",body:'Klein EY. Antimalarial drug resistance: A review of the biology and strategies to delay emergence and spread. International Journal of Antimicrobial Agents. 2013;41(4):311-317. DOI: 10.1016/j.ijantimicag.2012.12.007'},{id:"B135",body:'Dondorp AM et al. Artemisinin resistance in Plasmodium falciparum malaria. The New England Journal of Medicine. 2009;361(5):455-467. DOI: 10.1056/NEJMoa0808859'},{id:"B136",body:'Taylor SM, Juliano JJ, Meshnick SR. Artemisinin resistance in Plasmodium falciparum malaria. The New England Journal of Medicine. 2009;361(18):1807. DOI: 10.1056/NEJMc091737. author reply 1808'},{id:"B137",body:'Minnow YVT, Harijan RK, Schramm VL. A resistant mutant of plasmodium falciparum purine nucleoside phosphorylase uses wild-type neighbors to maintain parasite survival. The Journal of Biological Chemistry. 2021;296:100342. DOI: 10.1016/j.jbc.2021.100342'}],footnotes:[],contributors:[{corresp:null,contributorFullName:"Yacoba V.T. Minnow",address:null,affiliation:'
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Drugs have been associated with the development of delirium in the geriatric population and may be considered the most easily reversible trigger. Polypharmacy, prescription of deliriogenic, anticholinergic and potentially inappropriate drugs are contributing factors for the occurrence of the disturb. Furthermore, changes in pharmacokinetic and pharmacodynamic parameters, which are intrinsic of the aged process, may contribute for cognitive impairment. Identification and reversal of clinical conditions associated with delirium are the first step to treat the disturbance, as well as mitigation of environmental factors and the exposition to deliriogenic drugs. Current evidence does not support the prescription of antipsychotics and benzodiazepines for the treatment of delirium. However, the judicious use of first- or second-generation antipsychotics can be considered in severe cases. Multi-component non-pharmacological, software-based intervention to identify medications that could contribute to delirium, predictive models, tools, training of health professionals and active actions of pharmacovigilance may contribute to the screening, prevention, and management of delirium in older people. 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She is an editor for six international journals and a member of several financed projects by Fundação para a Ciência e Tecnologia (FCT), Instituto de Salud Carlos III, Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), and Quadro de Referência Estratégico Nacional (QREN).",institutionString:"University of Aveiro",institution:{name:"University of Aveiro",institutionURL:null,country:{name:"Portugal"}}},{id:"229554",title:"Prof.",name:"Leonardo Régis Leira",surname:"Pereira",slug:"leonardo-regis-leira-pereira",fullName:"Leonardo Régis Leira Pereira",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"320401",title:"Ph.D.",name:"Tânia",surname:"Magalhães Silva",slug:"tania-magalhaes-silva",fullName:"Tânia Magalhães Silva",position:null,profilePictureURL:"https://mts.intechopen.com/storage/users/320401/images/system/320401.jpg",biography:"Dr. Tânia Magalhães Silva is a biochemist with a Ph.D. in Biochemistry, with a specialization in Molecular/Cell Biology, from the University of Coimbra, Portugal, and Lund University, Sweden. She has postdocs in Microbiology and Immunology of Infection, and Cell Division, both from the Institute for Molecular and Cellular Biology (IBMC)/i3S, Porto University, Portugal. Dr. Silva was Assistant Professor of Biochemistry and Microbiology at ESSNorte–CVP, Oliveira de Azeméis, and Cell Culture Laboratory Assistant Professor at Lund University. She is currently a junior researcher at iBiMED, Aveiro University, with expertise in biomedical/health sciences, pharmacoepidemiology, clinical research, and public health. She has published more than twelve papers in indexed journals and two book chapters. She has also presented more than thirty oral/poster communications at national and international conferences. 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In her master\\'s degree, worked in the areas of Pharmaceutical Assistance, Primary Health Care and Family Health. In her doctorate, she implemented a pharmaceutical care service at the Allogeneic Hematopoietic Stem Cell Transplantation Unit of the General Hospital - Ribeirão Preto Medical School and served as a volunteer pharmacist preceptor of the internship course in Clinical Pharmacy. Currently, she teaches undergraduate courses in pharmacy, nursing, psychology and nutrition at Barão de Mauá University Centre (pharmaceutical care, pharmacology and psychopharmacology) and postgraduate courses. She is also a collaborator researcher at the Research Center for Pharmaceutical Assistance and Clinical Pharmacy at FCFRP-USP.",institutionString:null,institution:null},{id:"334509",title:"Dr.",name:"Ariane",surname:"Zanetti",slug:"ariane-zanetti",fullName:"Ariane Zanetti",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"334511",title:"Dr.",name:"Vinícius",surname:"Detoni Lopes",slug:"vinicius-detoni-lopes",fullName:"Vinícius Detoni Lopes",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"334512",title:"Dr.",name:"Alan",surname:"Maicon de Oliveira",slug:"alan-maicon-de-oliveira",fullName:"Alan Maicon de Oliveira",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"334514",title:"Dr.",name:"Lucas",surname:"Borges Pereira",slug:"lucas-borges-pereira",fullName:"Lucas Borges Pereira",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null},{id:"341510",title:"Dr.",name:"Thalita",surname:"Zago de Oliveira",slug:"thalita-zago-de-oliveira",fullName:"Thalita Zago de Oliveira",position:null,profilePictureURL:"//cdnintech.com/web/frontend/www/assets/author.svg",biography:null,institutionString:null,institution:null}]},generic:{page:{slug:"OA-publishing-fees",title:"Open Access Publishing Fees",intro:"
The Open Access model is applied to all of our publications and is designed to eliminate subscriptions and pay-per-view fees. This approach ensures free, immediate access to full text versions of your research.
As a gold Open Access publisher, an Open Access Publishing Fee is payable on acceptance following peer review of the manuscript. In return, we provide high quality publishing services and exclusive benefits for all contributors. IntechOpen is the trusted publishing partner of over 140,000 international scientists and researchers.
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4,000 GBP Compacts Monograph - Short Form
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850 GBP Journal Article (Across Portfolio)
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Services included are:
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English language copyediting and proofreading, including the correction of grammatical, spelling, and other common errors
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XML Typesetting and pagination - web (PDF, HTML) and print files preparation
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Discoverability - electronic citation and linking via DOI
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Permanent and unrestricted online access to your work
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What isn't covered by the Open Access Publishing Fee?
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If your manuscript:
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\\n\\t
Exceeds the number of pages defined by the publishing guidelines, an additional fee per page may be required
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If a manuscript requires Heavy Editing or Language Polishing, this will incur additional fees.
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Your Author Service Manager will inform you of any items not covered by the OAPF and provide exact information regarding those additional costs before proceeding.
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Open Access Funding
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To explore funding opportunities and learn more about how you can finance your IntechOpen publication, go to our Open Access Funding page. IntechOpen offers expert assistance to all of its Authors. We can support you in approaching funding bodies and institutions in relation to publishing fees by providing information about compliance with the Open Access policies of your funder or institution. We can also assist with communicating the benefits of Open Access in order to support and strengthen your funding request and provide personal guidance through your application process. You can contact us at funders@intechopen.com for further details or assistance.
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For Authors who are still unable to obtain funding from their institutions or research funding bodies for individual projects, IntechOpen does offer the possibility of applying for a Waiver to offset some or all processing feed. Details regarding our Waiver Policy can be found here.
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Added Value of Publishing with IntechOpen
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Choosing to publish with IntechOpen ensures the following benefits:
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Indexing and listing across major repositories, see details ...
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Long-term archiving
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Visibility on the world's strongest OA platform
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Live Performance Metrics to track readership and the impact of your chapter
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Dissemination and Promotion
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Benefits of Publishing with IntechOpen
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Proven world leader in Open Access book publishing with over 10 years experience
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+5,700 OA books published
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Most competitive prices in the market
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Fully compliant with OA funding requirements
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Optimized processes that assure your research is made available to the scientific community without delay
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Personal support during every step of the publication process
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+184,650 citations in Web of Science databases
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Currently strongest OA platform with over 175 million downloads
As a gold Open Access publisher, an Open Access Publishing Fee is payable on acceptance following peer review of the manuscript. In return, we provide high quality publishing services and exclusive benefits for all contributors. IntechOpen is the trusted publishing partner of over 140,000 international scientists and researchers.
\n\n
The Open Access Publishing Fee (OAPF) is payable only after your book chapter, monograph or journal article is accepted for publication.
\n\n
OAPF Publishing Options
\n\n
\n\t
1,400 GBP Chapter - Edited Volume
\n\t
850 GBP Chapter - Book Series Topic (Annual Volume)
\n\t
10,000 GBP Monograph - Long Form
\n\t
4,000 GBP Compacts Monograph - Short Form
\n\t
850 GBP Journal Article (Across Portfolio)
\n
\n\n
During the launching phase journals do not charge an APC, rather they will be funded by IntechOpen.
\n\n
*These prices do not include Value-Added Tax (VAT). Residents of European Union countries need to add VAT based on the specific rate in their country of residence. Institutions and companies registered as VAT taxable entities in their own EU member state will not pay VAT as long as provision of the VAT registration number is made during the application process. This is made possible by the EU reverse charge method.
\n\n
Services included are:
\n\n
\n\t
An online manuscript tracking system to facilitate your work
\n\t
Personal contact and support throughout the publishing process from your dedicated Author Service Manager
\n\t
Assurance that your manuscript meets the highest publishing standards
\n\t
English language copyediting and proofreading, including the correction of grammatical, spelling, and other common errors
\n\t
XML Typesetting and pagination - web (PDF, HTML) and print files preparation
\n\t
Discoverability - electronic citation and linking via DOI
\n\t
Permanent and unrestricted online access to your work
\n
\n\n
What isn't covered by the Open Access Publishing Fee?
\n\n
If your manuscript:
\n\n
\n\t
Exceeds the number of pages defined by the publishing guidelines, an additional fee per page may be required
\n\t
If a manuscript requires Heavy Editing or Language Polishing, this will incur additional fees.
\n
\n\n
Your Author Service Manager will inform you of any items not covered by the OAPF and provide exact information regarding those additional costs before proceeding.
\n\n
Open Access Funding
\n\n
To explore funding opportunities and learn more about how you can finance your IntechOpen publication, go to our Open Access Funding page. IntechOpen offers expert assistance to all of its Authors. We can support you in approaching funding bodies and institutions in relation to publishing fees by providing information about compliance with the Open Access policies of your funder or institution. We can also assist with communicating the benefits of Open Access in order to support and strengthen your funding request and provide personal guidance through your application process. You can contact us at funders@intechopen.com for further details or assistance.
\n\n
For Authors who are still unable to obtain funding from their institutions or research funding bodies for individual projects, IntechOpen does offer the possibility of applying for a Waiver to offset some or all processing feed. Details regarding our Waiver Policy can be found here.
\n\n
Added Value of Publishing with IntechOpen
\n\n
Choosing to publish with IntechOpen ensures the following benefits:
\n\n
\n\t
Indexing and listing across major repositories, see details ...
\n\t
Long-term archiving
\n\t
Visibility on the world's strongest OA platform
\n\t
Live Performance Metrics to track readership and the impact of your chapter
\n\t
Dissemination and Promotion
\n
\n\n
Benefits of Publishing with IntechOpen
\n\n
\n\t
Proven world leader in Open Access book publishing with over 10 years experience
\n\t
+5,700 OA books published
\n\t
Most competitive prices in the market
\n\t
Fully compliant with OA funding requirements
\n\t
Optimized processes that assure your research is made available to the scientific community without delay
\n\t
Personal support during every step of the publication process
\n\t
+184,650 citations in Web of Science databases
\n\t
Currently strongest OA platform with over 175 million downloads
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In particular, ecologists require data collected at appropriate spatial and temporal resolutions to describe ecological processes. For these reasons, we are witnessing the proliferation of UAV-based remote sensing techniques because they provide new perspectives on ecological phenomena that would otherwise be difficult to study. Therefore, we propose a brief review regarding the emerging applications of low-cost aerial platforms in the field of environmental sciences such as assessment of vegetation dynamics and forests biodiversity, wildlife research and management, map changes in freshwater marshes, river habitat mapping, and conservation and monitoring programs. In addition, we describe two applications of habitat mapping from UAS-based imagery, along the Central Mediterranean coasts, as study cases: (1) The upper limit of a Posidonia oceanica meadow was mapped to detect impacted areas, (2) high-resolution orthomosaic was used for supporting underwater visual census data in order to visualize juvenile fish densities and microhabitat use in four shallow coastal nurseries.",book:{id:"5847",slug:"aerial-robots-aerodynamics-control-and-applications",title:"Aerial Robots",fullTitle:"Aerial Robots - Aerodynamics, Control and Applications"},signatures:"Daniele Ventura, Andrea Bonifazi, Maria Flavia Gravina and Gian\nDomenico Ardizzone",authors:[{id:"198366",title:"Ph.D.",name:"Daniele",middleName:null,surname:"Ventura",slug:"daniele-ventura",fullName:"Daniele Ventura"},{id:"205321",title:"Mr.",name:"Andrea",middleName:null,surname:"Bonifazi",slug:"andrea-bonifazi",fullName:"Andrea Bonifazi"},{id:"205335",title:"Dr.",name:"Maria Flavia",middleName:null,surname:"Gravina",slug:"maria-flavia-gravina",fullName:"Maria Flavia Gravina"},{id:"205336",title:"Prof.",name:"Giandomenico",middleName:null,surname:"Ardizzone",slug:"giandomenico-ardizzone",fullName:"Giandomenico Ardizzone"}]},{id:"54685",doi:"10.5772/67915",title:"Underwater Optical Wireless Communication Systems: A Concise Review",slug:"underwater-optical-wireless-communication-systems-a-concise-review",totalDownloads:2339,totalCrossrefCites:16,totalDimensionsCites:17,abstract:"Underwater optical wireless communications (UOWC) have gained a considerable interest during the last years as an alternative means for broadband inexpensive submarine communications. UOWC present numerous similarities compared to free space optical (FSO) communications or laser satellite links mainly due to the fact that they employ optical wavelengths to transfer secure information between dedicated point‐to‐point links. By using suitable wavelengths, high data rates can be attained. Some recent works showed that broadband links can be achieved over moderate ranges. Transmissions of several Mbps have been realized in laboratory experiments by employing a simulated aquatic medium with scattering characteristics similar to oceanic waters. It was also demonstrated that UOWC networks are feasible to operate at high data rates for medium distances up to a hundred meters. However, it is not currently available as an industrial product and mainly test‐bed measurements in water test tanks have been reported so far. Therefore, extensive research is expected in the near future, which is necessary in order to further reveal the “hidden” abilities of optical spectrum to transfer broadband signals at higher distances. The present work summarizes the recent advances in channel modeling and system analysis and design in the area of UOWC.",book:{id:"5801",slug:"turbulence-modelling-approaches-current-state-development-prospects-applications",title:"Turbulence Modelling Approaches",fullTitle:"Turbulence Modelling Approaches - Current State, Development Prospects, Applications"},signatures:"Lydia K. Gkoura, George D. Roumelas, Hector E. Nistazakis, Harilaos\nG. Sandalidis, Alexander Vavoulas, Andreas D. Tsigopoulos and\nGeorge S. Tombras",authors:[{id:"19522",title:"Prof.",name:"George S.",middleName:null,surname:"Tombras",slug:"george-s.-tombras",fullName:"George S. Tombras"},{id:"23386",title:"Prof.",name:"Hector",middleName:"E.",surname:"Nistazakis",slug:"hector-nistazakis",fullName:"Hector Nistazakis"},{id:"171669",title:"Ms.",name:"Lydia",middleName:null,surname:"Gkoura",slug:"lydia-gkoura",fullName:"Lydia Gkoura"},{id:"171670",title:"Prof.",name:"Andreas",middleName:null,surname:"Tsigopoulos",slug:"andreas-tsigopoulos",fullName:"Andreas Tsigopoulos"},{id:"171672",title:"Dr.",name:"Alexander",middleName:null,surname:"Vavoulas",slug:"alexander-vavoulas",fullName:"Alexander Vavoulas"},{id:"199221",title:"MSc.",name:"George D.",middleName:null,surname:"Roumelas",slug:"george-d.-roumelas",fullName:"George D. Roumelas"},{id:"199222",title:"Prof.",name:"H.G.",middleName:null,surname:"Sandalidis",slug:"h.g.-sandalidis",fullName:"H.G. Sandalidis"}]},{id:"66116",doi:"10.5772/intechopen.84982",title:"High Entropy Alloys for Aerospace Applications",slug:"high-entropy-alloys-for-aerospace-applications",totalDownloads:1697,totalCrossrefCites:9,totalDimensionsCites:14,abstract:"In the aerospace industry, materials used as modern engine components must be able to withstand extreme operating temperatures, creep, fatigue crack growth and translational movements of parts at high speed. Therefore, the parts produced must be lightweight and have good elevated-temperature strength, fatigue, resistant to chemical degradation, wear and oxidation resistance. High entropy alloys (HEAs) characterize the cutting edge of high-performance materials. These alloys are materials with complex compositions of multiple elements and striking characteristics in contrast to conventional alloys; their high configuration entropy mixing is more stable at elevated temperatures. This attribute allows suitable alloying elements to increase the properties of the materials based on four core effects , which gives tremendous possibilities as potential structural materials in jet engine applications. Researchers fabricate most of these materials using formative manufacturing technologies; arc melting. However, the challenges of heating the elements together have the tendency to form hypoeutectic that separates itself from the rest of the elements and defects reported are introduced during the casting process. Nevertheless, Laser Engineering Net Shaping (LENS™) and Selective Laser Melting (SLM); a powder-based laser additive manufacturing process offers versatility, accuracy in geometry and fabrication of three-dimensional dense structures layer by layer avoiding production errors.",book:{id:"8558",slug:"aerodynamics",title:"Aerodynamics",fullTitle:"Aerodynamics"},signatures:"Modupeola Dada, Patricia Popoola, Samson Adeosun and Ntombi Mathe",authors:[{id:"169258",title:"Dr.",name:"Patricia",middleName:null,surname:"Popoola",slug:"patricia-popoola",fullName:"Patricia Popoola"},{id:"285697",title:"M.Sc.",name:"Modupeola",middleName:null,surname:"Dada",slug:"modupeola-dada",fullName:"Modupeola Dada"},{id:"292368",title:"Dr.",name:"Samson",middleName:null,surname:"Adeosun",slug:"samson-adeosun",fullName:"Samson Adeosun"},{id:"292369",title:"Dr.",name:"Ntombi",middleName:null,surname:"Mathe",slug:"ntombi-mathe",fullName:"Ntombi Mathe"}]},{id:"55155",doi:"10.5772/67918",title:"Numerical Analysis of Laminar‐Turbulent Bifurcation Scenarios in Kelvin‐Helmholtz and Rayleigh‐Taylor Instabilities for Compressible Flow",slug:"numerical-analysis-of-laminar-turbulent-bifurcation-scenarios-in-kelvin-helmholtz-and-rayleigh-taylo",totalDownloads:1734,totalCrossrefCites:5,totalDimensionsCites:8,abstract:"In the chapter, we are focused on laminar-turbulent transition in compressible flows triggered by Kelvin-Helmholtz (KH) and Rayleigh-Taylor (RT) instabilities. Compressible flow equations in conservation form are considered. We bring forth the characteristic feature of supersonic flow from the dynamical system point of view. Namely, we show analytically and confirm numerically that the phase space is separated into independent subspaces by the systems of stationary shock waves. Floquet theory analysis is applied to the linearized problem using matrix-free implicitly restarted Arnoldi method. All numerical methods are designed for CPU and multiGPU architecture using MPI across GPUs. Some benchmark data and features of development are presented. We show that KH for symmetric 2D perturbations undergoes cycle bifurcation scenarios with many chaotic cycle threads, each thread being a Feigenbaum-Sharkovskiy-Magnitskii (FShM) cascade. With the break of the symmetry, a 3D instability develops rapidly, and the bifurcations includes Landau-Hopf scenario with computationally stable 4D torus. For each torus, there exist threads of cycles that can develop chaotic regimes, so the flow is more complicated and difficult to study. Thus, we present laminar-turbulent development of compressible RT and KH instabilities as the bifurcations scenarios.",book:{id:"5801",slug:"turbulence-modelling-approaches-current-state-development-prospects-applications",title:"Turbulence Modelling Approaches",fullTitle:"Turbulence Modelling Approaches - Current State, Development Prospects, Applications"},signatures:"Nikolay Mihaylovitch Evstigneev and Nikolai Alexandrovitch\nMagnitskii",authors:[{id:"96107",title:"Prof.",name:"Nikolai A.",middleName:"Alexandrovich",surname:"Magnitskii",slug:"nikolai-a.-magnitskii",fullName:"Nikolai A. Magnitskii"},{id:"151627",title:"Dr.",name:"N. M.",middleName:null,surname:"Evstigneev",slug:"n.-m.-evstigneev",fullName:"N. M. Evstigneev"}]},{id:"55909",doi:"10.5772/intechopen.69396",title:"Computational Aeroelasticity of Flying Robots with Flexible Wings",slug:"computational-aeroelasticity-of-flying-robots-with-flexible-wings",totalDownloads:2002,totalCrossrefCites:3,totalDimensionsCites:7,abstract:"A computational co‐simulation framework for flying robots with flexible wings is presented. The authors combine a nonlinear aerodynamic model based on an extended version of the unsteady vortex‐lattice method with a nonlinear structural model based on a segregated formulation of Lagrange’s equations obtained with the Floating Frame of Reference formalism. The structural model construction allows for hybrid combinations of different models typically used with multibody systems such as models based on rigid‐body dynamics, assumed‐modes techniques, and finite‐element methods. The aerodynamic model includes a simulation of leading‐edge separation for large angles of attack. The governing differential‐algebraic equations are solved simultaneously and interactively to obtain the structural response and the flow in the time domain. The integration is based on the fourth‐order predictor‐corrector method of Hamming with a procedure to stabilize the iteration. The findings are found to capture known nonlinear behavior of flapping-wing systems. The developed framework should be relevant for conducting aeroelastic studies on a wide variety of air vehicle systems.",book:{id:"5847",slug:"aerial-robots-aerodynamics-control-and-applications",title:"Aerial Robots",fullTitle:"Aerial Robots - Aerodynamics, Control and Applications"},signatures:"Sergio Preidikman, Bruno Antonio Roccia, Marcos Leonardo\nVerstraete, Marcelo Federico Valdez, Dean T. Mook and Balakumar\nBalachandran",authors:[{id:"201035",title:"Dr.",name:"Sergio",middleName:null,surname:"Preidikman",slug:"sergio-preidikman",fullName:"Sergio Preidikman"},{id:"201037",title:"Dr.",name:"Bruno A.",middleName:null,surname:"Roccia",slug:"bruno-a.-roccia",fullName:"Bruno A. Roccia"},{id:"201038",title:"Dr.",name:"Marcos L.",middleName:null,surname:"Verstraete",slug:"marcos-l.-verstraete",fullName:"Marcos L. Verstraete"},{id:"201039",title:"Dr.",name:"Marcelo F.",middleName:null,surname:"Valdéz",slug:"marcelo-f.-valdez",fullName:"Marcelo F. Valdéz"},{id:"201040",title:"Dr.",name:"Balakumar",middleName:null,surname:"Balachandran",slug:"balakumar-balachandran",fullName:"Balakumar Balachandran"},{id:"201041",title:"Dr.",name:"Dean T.",middleName:null,surname:"Mook",slug:"dean-t.-mook",fullName:"Dean T. Mook"}]}],mostDownloadedChaptersLast30Days:[{id:"69603",title:"Introduction to Satellite Attitude Control",slug:"introduction-to-satellite-attitude-control",totalDownloads:1382,totalCrossrefCites:1,totalDimensionsCites:1,abstract:"This chapter will introduce the space environment satellites must operate in, the motion they make in orbit, and their orientation while in orbit. The forces acting on the spacecraft will be considered, along with the implications of conservation of energy. The fundamentals of orbital mechanics will be presented, so common orbits can be visualized and discussed in terms of the six classical orbital elements. Perturbations impacting the orbit are covered for a better understanding of how orbits change over time. The inertial frame of reference will be defined and then transformed into body coordinates of the satellite using the direction cosine matrix and quaternions to describe the attitude of the spacecraft. A variety of modern attitude control techniques will be developed in the following chapters.",book:{id:"7761",slug:"advances-in-spacecraft-attitude-control",title:"Advances in Spacecraft Attitude Control",fullTitle:"Advances in Spacecraft Attitude Control"},signatures:"Henry Travis",authors:[{id:"290765",title:"Mr.",name:"Henry",middleName:null,surname:"Travis",slug:"henry-travis",fullName:"Henry Travis"}]},{id:"56312",title:"Design and Development of Aerial Robotic Systems for Sampling Operations in Industrial Environment",slug:"design-and-development-of-aerial-robotic-systems-for-sampling-operations-in-industrial-environment",totalDownloads:1480,totalCrossrefCites:0,totalDimensionsCites:0,abstract:"This chapter describes the development of an autonomous fluid sampling system for outdoor facilities, and the localization solution to be used. The automated sampling system will be based on collaborative robotics, with a team of a UAV and a UGV platform travelling through a plant to collect water samples. The architecture of the system is described, as well as the hardware present in the UAV and the different software frameworks used. A visual simultaneous localization and mapping (SLAM) technique is proposed to deal with the localization problem, based on authors’ previous works, including several innovations: a new method to initialize the scale using unreliable global positioning system (GPS) measurements, integration of attitude and heading reference system (AHRS) measurements into the recursive state estimation, and a new technique to track features during the delayed feature initialization process. These procedures greatly enhance the robustness and usability of the SLAM technique as they remove the requirement of assisted scale initialization, and they reduce the computational effort to initialize features. To conclude, results from experiments performed with simulated data and real data captured with a prototype UAV are presented and discussed.",book:{id:"5847",slug:"aerial-robots-aerodynamics-control-and-applications",title:"Aerial Robots",fullTitle:"Aerial Robots - Aerodynamics, Control and Applications"},signatures:"Rodrigo Munguia, Edmundo Guerra, Sarquis Urzua, Yolanda Bolea\nand Antoni Grau",authors:[{id:"13038",title:"Prof.",name:"Antoni",middleName:null,surname:"Grau",slug:"antoni-grau",fullName:"Antoni Grau"},{id:"18024",title:"Dr.",name:"Yolanda",middleName:null,surname:"Bolea",slug:"yolanda-bolea",fullName:"Yolanda Bolea"},{id:"163432",title:"Dr.",name:"Rodrigo",middleName:null,surname:"Munguia",slug:"rodrigo-munguia",fullName:"Rodrigo Munguia"},{id:"165970",title:"Ph.D. Student",name:"Edmundo",middleName:null,surname:"Guerra",slug:"edmundo-guerra",fullName:"Edmundo Guerra"},{id:"201103",title:"Mr.",name:"Sarquis",middleName:null,surname:"Urzua",slug:"sarquis-urzua",fullName:"Sarquis Urzua"}]},{id:"55140",title:"Interface Instability and Turbulent Mixing",slug:"interface-instability-and-turbulent-mixing",totalDownloads:1721,totalCrossrefCites:0,totalDimensionsCites:1,abstract:"Richtmyer‐Meshkov instability and turbulent mixing are fundamental problems of multi‐materials interface dynamics, which mainly focuses on the growth of perturbation on the interface and mixing of different materials. It is very important in many applications such as inertial confinement fusion, high‐speed combustion, supernova, etc. In this chapter, we will gain advances in understanding this problem by numerical investigations, including the numerical method and program we used, the verification and validation of numerical method and program, the growth laws and mechanics of turbulent mixing, the effects of initial conditions, the dynamic behavior, and some new phenomenon for Richtmyer‐Meshkov instability and turbulent mixing.",book:{id:"5801",slug:"turbulence-modelling-approaches-current-state-development-prospects-applications",title:"Turbulence Modelling Approaches",fullTitle:"Turbulence Modelling Approaches - Current State, Development Prospects, Applications"},signatures:"Jingsong Bai and Tao Wang",authors:[{id:"199258",title:"Mr.",name:"Tao",middleName:null,surname:"Wang",slug:"tao-wang",fullName:"Tao Wang"},{id:"199259",title:"Prof.",name:"Jingsong",middleName:null,surname:"Bai",slug:"jingsong-bai",fullName:"Jingsong Bai"}]},{id:"66116",title:"High Entropy Alloys for Aerospace Applications",slug:"high-entropy-alloys-for-aerospace-applications",totalDownloads:1696,totalCrossrefCites:9,totalDimensionsCites:14,abstract:"In the aerospace industry, materials used as modern engine components must be able to withstand extreme operating temperatures, creep, fatigue crack growth and translational movements of parts at high speed. Therefore, the parts produced must be lightweight and have good elevated-temperature strength, fatigue, resistant to chemical degradation, wear and oxidation resistance. High entropy alloys (HEAs) characterize the cutting edge of high-performance materials. These alloys are materials with complex compositions of multiple elements and striking characteristics in contrast to conventional alloys; their high configuration entropy mixing is more stable at elevated temperatures. This attribute allows suitable alloying elements to increase the properties of the materials based on four core effects , which gives tremendous possibilities as potential structural materials in jet engine applications. Researchers fabricate most of these materials using formative manufacturing technologies; arc melting. However, the challenges of heating the elements together have the tendency to form hypoeutectic that separates itself from the rest of the elements and defects reported are introduced during the casting process. Nevertheless, Laser Engineering Net Shaping (LENS™) and Selective Laser Melting (SLM); a powder-based laser additive manufacturing process offers versatility, accuracy in geometry and fabrication of three-dimensional dense structures layer by layer avoiding production errors.",book:{id:"8558",slug:"aerodynamics",title:"Aerodynamics",fullTitle:"Aerodynamics"},signatures:"Modupeola Dada, Patricia Popoola, Samson Adeosun and Ntombi Mathe",authors:[{id:"169258",title:"Dr.",name:"Patricia",middleName:null,surname:"Popoola",slug:"patricia-popoola",fullName:"Patricia Popoola"},{id:"285697",title:"M.Sc.",name:"Modupeola",middleName:null,surname:"Dada",slug:"modupeola-dada",fullName:"Modupeola Dada"},{id:"292368",title:"Dr.",name:"Samson",middleName:null,surname:"Adeosun",slug:"samson-adeosun",fullName:"Samson Adeosun"},{id:"292369",title:"Dr.",name:"Ntombi",middleName:null,surname:"Mathe",slug:"ntombi-mathe",fullName:"Ntombi Mathe"}]},{id:"55173",title:"Statistical Modeling for the Energy-Containing Structure of Turbulent Flows",slug:"statistical-modeling-for-the-energy-containing-structure-of-turbulent-flows",totalDownloads:1381,totalCrossrefCites:0,totalDimensionsCites:0,abstract:"The development of statistical theory for the energy-containing structure of turbulent flows, taking the phenomenon of internal intermittency into account, is proposed, and new differential equations for conditional means of turbulent and nonturbulent fluid flow are established. Based on this fact, a new principle of constructing mathematical models is formulated as the method of autonomous statistical modeling of turbulent flows, ASMTurb method. Testing of the method is attained on the example of constructing a mathematical model for the conditional means of turbulent fluid flow in a turbulent mixing layer of co-current streams. Test results showed excellent agreements between the predictions of the ASMTurb model and known experimental data.",book:{id:"5801",slug:"turbulence-modelling-approaches-current-state-development-prospects-applications",title:"Turbulence Modelling Approaches",fullTitle:"Turbulence Modelling Approaches - Current State, Development Prospects, Applications"},signatures:"Yuriy Nuzhnov",authors:[{id:"198896",title:"Dr.",name:"Yuriy",middleName:null,surname:"Nuzhnov",slug:"yuriy-nuzhnov",fullName:"Yuriy Nuzhnov"}]}],onlineFirstChaptersFilter:{topicId:"682",limit:6,offset:0},onlineFirstChaptersCollection:[],onlineFirstChaptersTotal:0},preDownload:{success:null,errors:{}},subscriptionForm:{success:null,errors:{}},aboutIntechopen:{},privacyPolicy:{},peerReviewing:{},howOpenAccessPublishingWithIntechopenWorks:{},sponsorshipBooks:{sponsorshipBooks:[],offset:0,limit:8,total:null},allSeries:{pteSeriesList:[{id:"14",title:"Artificial Intelligence",numberOfPublishedBooks:9,numberOfPublishedChapters:90,numberOfOpenTopics:6,numberOfUpcomingTopics:0,issn:"2633-1403",doi:"10.5772/intechopen.79920",isOpenForSubmission:!0},{id:"7",title:"Biomedical Engineering",numberOfPublishedBooks:12,numberOfPublishedChapters:108,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2631-5343",doi:"10.5772/intechopen.71985",isOpenForSubmission:!0}],lsSeriesList:[{id:"11",title:"Biochemistry",numberOfPublishedBooks:33,numberOfPublishedChapters:330,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2632-0983",doi:"10.5772/intechopen.72877",isOpenForSubmission:!0},{id:"25",title:"Environmental Sciences",numberOfPublishedBooks:1,numberOfPublishedChapters:19,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2754-6713",doi:"10.5772/intechopen.100362",isOpenForSubmission:!0},{id:"10",title:"Physiology",numberOfPublishedBooks:14,numberOfPublishedChapters:145,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2631-8261",doi:"10.5772/intechopen.72796",isOpenForSubmission:!0}],hsSeriesList:[{id:"3",title:"Dentistry",numberOfPublishedBooks:9,numberOfPublishedChapters:141,numberOfOpenTopics:2,numberOfUpcomingTopics:0,issn:"2631-6218",doi:"10.5772/intechopen.71199",isOpenForSubmission:!0},{id:"6",title:"Infectious Diseases",numberOfPublishedBooks:13,numberOfPublishedChapters:124,numberOfOpenTopics:4,numberOfUpcomingTopics:0,issn:"2631-6188",doi:"10.5772/intechopen.71852",isOpenForSubmission:!0},{id:"13",title:"Veterinary Medicine and Science",numberOfPublishedBooks:11,numberOfPublishedChapters:112,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2632-0517",doi:"10.5772/intechopen.73681",isOpenForSubmission:!0}],sshSeriesList:[{id:"22",title:"Business, Management and Economics",numberOfPublishedBooks:1,numberOfPublishedChapters:22,numberOfOpenTopics:3,numberOfUpcomingTopics:0,issn:"2753-894X",doi:"10.5772/intechopen.100359",isOpenForSubmission:!0},{id:"23",title:"Education and Human Development",numberOfPublishedBooks:0,numberOfPublishedChapters:11,numberOfOpenTopics:1,numberOfUpcomingTopics:1,issn:null,doi:"10.5772/intechopen.100360",isOpenForSubmission:!0},{id:"24",title:"Sustainable Development",numberOfPublishedBooks:1,numberOfPublishedChapters:19,numberOfOpenTopics:5,numberOfUpcomingTopics:0,issn:"2753-6580",doi:"10.5772/intechopen.100361",isOpenForSubmission:!0}],testimonialsList:[{id:"13",text:"The collaboration with and support of the technical staff of IntechOpen is fantastic. The whole process of submitting an article and editing of the submitted article goes extremely smooth and fast, the number of reads and downloads of chapters is high, and the contributions are also frequently cited.",author:{id:"55578",name:"Antonio",surname:"Jurado-Navas",institutionString:null,profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bRisIQAS/Profile_Picture_1626166543950",slug:"antonio-jurado-navas",institution:{id:"720",name:"University of Malaga",country:{id:null,name:"Spain"}}}},{id:"6",text:"It is great to work with the IntechOpen to produce a worthwhile collection of research that also becomes a great educational resource and guide for future research endeavors.",author:{id:"259298",name:"Edward",surname:"Narayan",institutionString:null,profilePictureURL:"https://mts.intechopen.com/storage/users/259298/images/system/259298.jpeg",slug:"edward-narayan",institution:{id:"3",name:"University of Queensland",country:{id:null,name:"Australia"}}}}]},series:{item:{id:"24",title:"Sustainable Development",doi:"10.5772/intechopen.100361",issn:"2753-6580",scope:"
\r\n\tTransforming our World: the 2030 Agenda for Sustainable Development endorsed by United Nations and 193 Member States, came into effect on Jan 1, 2016, to guide decision making and actions to the year 2030 and beyond. Central to this Agenda are 17 Goals, 169 associated targets and over 230 indicators that are reviewed annually. The vision envisaged in the implementation of the SDGs is centered on the five Ps: People, Planet, Prosperity, Peace and Partnership. This call for renewed focused efforts ensure we have a safe and healthy planet for current and future generations.
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\r\n\tThis Series focuses on covering research and applied research involving the five Ps through the following topics:
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\r\n\t1. Sustainable Economy and Fair Society that relates to SDG 1 on No Poverty, SDG 2 on Zero Hunger, SDG 8 on Decent Work and Economic Growth, SDG 10 on Reduced Inequalities, SDG 12 on Responsible Consumption and Production, and SDG 17 Partnership for the Goals
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\r\n\t2. Health and Wellbeing focusing on SDG 3 on Good Health and Wellbeing and SDG 6 on Clean Water and Sanitation
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\r\n\t3. Inclusivity and Social Equality involving SDG 4 on Quality Education, SDG 5 on Gender Equality, and SDG 16 on Peace, Justice and Strong Institutions
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\r\n\t4. Climate Change and Environmental Sustainability comprising SDG 13 on Climate Action, SDG 14 on Life Below Water, and SDG 15 on Life on Land
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\r\n\t5. Urban Planning and Environmental Management embracing SDG 7 on Affordable Clean Energy, SDG 9 on Industry, Innovation and Infrastructure, and SDG 11 on Sustainable Cities and Communities.
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\r\n\tThe series also seeks to support the use of cross cutting SDGs, as many of the goals listed above, targets and indicators are all interconnected to impact our lives and the decisions we make on a daily basis, making them impossible to tie to a single topic.
",coverUrl:"https://cdn.intechopen.com/series/covers/24.jpg",latestPublicationDate:"August 2nd, 2022",hasOnlineFirst:!0,numberOfPublishedBooks:1,editor:{id:"262440",title:"Prof.",name:"Usha",middleName:null,surname:"Iyer-Raniga",slug:"usha-iyer-raniga",fullName:"Usha Iyer-Raniga",profilePictureURL:"https://s3.us-east-1.amazonaws.com/intech-files/0030O00002bRYSXQA4/Profile_Picture_2022-02-28T13:55:36.jpeg",biography:"Usha Iyer-Raniga is a professor in the School of Property and Construction Management at RMIT University. Usha co-leads the One Planet Network’s Sustainable Buildings and Construction Programme (SBC), a United Nations 10 Year Framework of Programmes on Sustainable Consumption and Production (UN 10FYP SCP) aligned with Sustainable Development Goal 12. The work also directly impacts SDG 11 on Sustainable Cities and Communities. She completed her undergraduate degree as an architect before obtaining her Masters degree from Canada and her Doctorate in Australia. Usha has been a keynote speaker as well as an invited speaker at national and international conferences, seminars and workshops. Her teaching experience includes teaching in Asian countries. She has advised Austrade, APEC, national, state and local governments. She serves as a reviewer and a member of the scientific committee for national and international refereed journals and refereed conferences. She is on the editorial board for refereed journals and has worked on Special Issues. Usha has served and continues to serve on the Boards of several not-for-profit organisations and she has also served as panel judge for a number of awards including the Premiers Sustainability Award in Victoria and the International Green Gown Awards. Usha has published over 100 publications, including research and consulting reports. Her publications cover a wide range of scientific and technical research publications that include edited books, book chapters, refereed journals, refereed conference papers and reports for local, state and federal government clients. She has also produced podcasts for various organisations and participated in media interviews. She has received state, national and international funding worth over USD $25 million. Usha has been awarded the Quarterly Franklin Membership by London Journals Press (UK). Her biography has been included in the Marquis Who's Who in the World® 2018, 2016 (33rd Edition), along with approximately 55,000 of the most accomplished men and women from around the world, including luminaries as U.N. Secretary-General Ban Ki-moon. 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\r\n\tThe era of antibiotics led us to the illusion that the problem of bacterial infection is over. However, bacterial flexibility and adaptation mechanisms allow them to survive and grow in extreme conditions. The best example is the formation of a sophisticated society of bacteria defined as a biofilm. Understanding the mechanism of bacterial biofilm formation has changed our perception of the development of bacterial infection but successfully eradicating biofilm remains a challenge. Considering the above, it is not surprising that bacteria remain a major public health threat despite the development of many groups of antibiotics. Additionally, increasing prevalence of acquired antibiotic resistance forces us to realize that we are far from controlling the development of bacterial infections. On the other hand, many infections are endogenous and result from an unbalanced relationship between the host and the microorganism. The increasing use of immunosuppressants, such as chemotherapy or organ transplantation, increases the incidence of patients highly susceptible to bacterial infections in the population.
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\r\n\tThis topic will focus on the current challenges and advantages in the diagnosis and treatment of bacterial infections. We will discuss the host-microbiota relationship, the treatment of chronic infections due to biofilm formation, and the development of new diagnostic tools to rapidly distinguish between colonization and probable infection.
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Special attention should be given to endemic fungal infections, identification of important clinical fungal infections advanced in yeasts, filamentous fungal infections, skin mycobiome and fungal genomes, and immunity to fungal infections.\r\nIn addition, endemic fungal diseases or uncommon fungal infections caused by Mucor irregularis, dermatophytosis, Malassezia, cryptococcosis, chromoblastomycosis, coccidiosis, blastomycosis, histoplasmosis, sporotrichosis, and other fungi, should be monitored. \r\nThis topic includes the research progress on the etiology and pathogenesis of fungal infections, new methods of isolation and identification, rapid detection, drug sensitivity testing, new antifungal drugs, schemes and case series reports. 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Many parasitic diseases are classified as neglected tropical diseases because they have received minimal funding over recent years and, in many cases, are under-reported despite the critical role they play in morbidity and mortality among human and animal hosts. The current topic, Parasitic Infectious Diseases, in the Infectious Diseases Series aims to publish studies on the systematics, epidemiology, molecular biology, genomics, pathogenesis, genetics, and clinical significance of parasitic diseases from blood borne to intestinal parasites as well as zoonotic parasites. We hope to cover all aspects of parasitic diseases to provide current and relevant research data on these very important diseases. In the current atmosphere of the Coronavirus pandemic, communities around the world, particularly those in different underdeveloped areas, are faced with the growing challenges of the high burden of parasitic diseases. At the same time, they are faced with the Covid-19 pandemic leading to what some authors have called potential syndemics that might worsen the outcome of such infections. Therefore, it is important to conduct studies that examine parasitic infections in the context of the coronavirus pandemic for the benefit of all communities to help foster more informed decisions for the betterment of human and animal health.",coverUrl:"https://cdn.intechopen.com/series_topics/covers/5.jpg",keywords:"Blood Borne Parasites, Intestinal Parasites, Protozoa, Helminths, Arthropods, Water Born Parasites, Epidemiology, Molecular Biology, Systematics, Genomics, Proteomics, Ecology"},{id:"6",title:"Viral Infectious Diseases",scope:"The Viral Infectious Diseases Book Series aims to provide a comprehensive overview of recent research trends and discoveries in various viral infectious diseases emerging around the globe. The emergence of any viral disease is hard to anticipate, which often contributes to death. 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