3d-orbital parameters cik’s of Cu2+. Significant ones in thick lines
1. Introduction
There are two ways to the analysis of electron density distribution (EDD) measured by X-ray diffraction. Multipole refinement (Stewart, 1969, 1973; Hansen & Coppens, 1978) expresses EDD as a linear combination of spherical harmonics. Using the determined functions, EDD is analyzed with Bader topological analysis (Bader, 1994). The concept of critical points of Bader theory defines the characters of chemical bonds. However, it does not give atomic orbital (AO) and its electron population, except for orbitals in high symmetry crystal fields where AO's are defined by theory. The other is based on quantum-mechanical orbital-models and gives the physical quantities just mentioned. The objective of this chapter is to introduce one of the second methods, the X-ray atomic orbital analysis (XAO) (Tanaka et al., 2008; hereinafter referred to as
XAO is closely related to the electron population analysis (Stewart, 1969; Coppens et al., 1971). However, it was abandoned since the orthonormal relationships between orbital functions caused severe parameter interactions in conventional least-squares refinements. Later, the method incorporating the ortho-normal relationships between AO or MO (molecular orbital) was formulated by employing Lagrange’s unknown multiplier method (Tanaka, 1988; hereinafter referred to as
The AO-based EDD refinement has been started from 3d-transition metal complexes with so high crystal symmetry that the AO's are known by the crystal field theory. Spin states of the metals in perovskites, KCoF3 and KMnF3 (Kijima et al., 1981, 1983) and KFeF3 (Miyata et al., 1983) were determined to be high spin. On the other hand, mixed orbitals of
These investigations revealed that the anharmonic vibration (AHV) of atoms could not be ignored, since significant peaks still remained after removing the
Since the ratio of the number of bonding electrons to those in the unit cell becomes smaller as the atomic number increases, very accurate structure factors are necessary for X-ray EDD investigations of rare-earth compounds. Thus, the EDD analysis based on chemical-bond theories had not been done when we started the study on CeB6. Actually, the ratio in CeB6 is 1/88, which demands us to measure structure factors with the accuracy less than 1 %. Rare-earth crystals are usually very hard and good resulting in enhanced extinction and multiple diffraction (MD). Therefore, MD was investigated using the method by Tanaka & Saito (1975) in which an effective way to detect MD and correct for it were proposed. It introduced the time-lag between the relevant reflections, which usually do not occur at exactly the same time, to the method by Moon and Shull (1964). The effect of MD was demonstrated through the study of PtP2 (Tanaka, et al., 1994) by measuring intensities avoiding MD and compared to those measured at the bisecting positions.
The frontier investigations aiming to measure 4f-EDD were done for CeB6 (Sato, 1985) at 100 and 298 K and for nonaaqualanthanoids (Ln:La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Yb and Lu) (Chatterjee at al. 1988). Significant peaks were found around these rare-earth atoms on the residual density maps. However, the aspherical features of 4f-EDD were not analyzed quantitatively by the X-ray scattering factors calculated with AO's in a crystal field. The first
2. Basic formalism of XAO
2.1. AO's in crystal fields
The i-th AO,
where
where
2.2. Least-squares method incorporating ortho-normal condition
In a non-linear least-squares refinement, mathematical and physical relationships between parameters should be taken into account to avoid parameter interaction. The conventional one used in X-ray crystallography was improved to obtain AO/MO by taking into account the orthonormal relationship between wave functions (Tanaka, 1988),
where
where
For definition of v see eqs. (10a) to (10d) of II. Putting
Putting λij’=(1+δij)λij/2, Q is differentiated to give,
where
where
where m runs from 1 to M. The other elements
2.3. Electron density and structure factors
The electron density
where
where
is calculated as an average in space and time of exp(ik∙u) by assuming each atom vibrates independently from each other.
where
where
2.4. Anharmonic vibration (AHV)
Gaussian probability density functions (p.d.f.) of atoms are Fourier transformed to give harmonic ADP. Gram-Charier (G-C) formalism is widely used to introduce AHV. However, it expresses aspherical EDDs both from orbital functions and AHV, as shown clearly by Mallinson et al. (1988). Thus, it may not be adequate for accurate EDD researches. The method based on Boltzmann statistics (Dawson et al. 1967, Willis, 1969) was employed,
where
where i, j, k, l run from 1 to 3 and ‘ means they are permutable. There are 10 cubic and 15 quartic terms. Potential expansion terminates at the quadratic terms in the harmonic ADP.
By assuming the sum of the third and the fourth terms in (18) is much smaller than
3. Experimental
3.1. Multiple diffraction (MD)
MD occurs when two or more reflections are on the Ewald sphere. When the incident beam with wave length
b
Secondary reflections only around the surface of the Ewald sphere are searched using eqs. (19) to (21). Integers
The change of intensity by MD was first formulated by Moon & Shull (1964). Primary and secondary beams usually come on the Ewald sphere with an angle-lag Δε. Using Δε The formalism was modified for a spherical crystal with a radius
Subscripts
The EDD analyses of compounds with metals and rare-earth elements need accurate measurements of structure factors, however MD affects the measured intensity seriously since
4. XAO analysis for crystals in the O h crystal field
4.1. 3d, 4f and 5d orbitals in the O h crystal field
In the present chapter EDD investigations on the first-transition metal complexes and rare earth compounds in
4.2. 3d -EDDand spin states in KCoF3, KMnF3 and KFeF3
The peak due to 3d electrons was first reported for [Co(NH3)6][Co(CN)6] (Iwata & Saito, 1975) around the Co atom in
5. Experimental AO determination
When symmetries of crystal fields are low,
5.1. Jahn-Teller distortion in KCuF3 and mixed d x 2 − y 2 and d z 2 orbital
In KCuF3 each F- ion between Cu2+ ions (3d9) shifts from the centre by Jahn-Teller effect. It makes short Cu-Fs, medium Cu-Fm, parallel to
The peaks on
5.2. 3d orbitals in 1 ¯ crystal field of Cu(daco)2(NO3)2
The Cu2+ ion (3d9) of Cu(daco)2(NO3)2(daco: 1,5-diazacyclooctane) is on the centre of symmetry and forms a coordination plane with the four N atoms in daco (Hoshino, et al., 1989). Difference densities on and perpendicular to the Cu-N4 plane after the spherical-atom refinement are shown in Fig. 5(a) and (b). Negative four peaks in Fig. 5 (a) near Cu2+ correspond to a 3d-hole. However, the peaks do not locate on the Cu-N bonds. Since the crystal field of the Cu atom is Ci, d-orbitals of Cu2+ are expressed as a linear combination of
When G-C formalism was applied to an iron complex, it removed the peaks equally well as the multipole refinement did (Mallinson, et al., 1988). Our AHV analysis is based on the classical thermodynamics and does not have such a problem, though the p.d.f. function
6. 4f-EDD in rare-earth hexa-borides
4f-EDD analysis has become more and more important since many rare-earth compounds with interesting physical properties, such as high-temperature super conductors, have been found. The EDD of rare-earth hexa-borides were investigated since they are famous for their properties related to the Kondo effect.
6.1. XAO analysis of CeB6
Ce and B atoms are at the body-centre and on the edges of the cubic unit cell with the B6 regular octahedra at the corners as shown in Fig. 7. Ce is in an
Spin-orbit interaction was introduced into the XAO analysis. Four-fold degenerate 4f5/2Γ8 orbitals were taken from Table 4 (b) of
where
6.1.1. XAO analysis of CeB6 below room temperature
After spherical-atom refinement for ions, Ce3+ and B0.5-, the populations of the orbitals were refined keeping the sum of them equal to that of nuclear charges. When populations of them exceeded one/two or became negative, they were fixed to one/two or zero. In our program
Electron accumulation at
The XAO analysis of CeB6 was applied to the weak-field model. The crystal structure, EDD, electron populations, expansion/contraction parameters and AHV parameters were quite consistent with each other at different temperatures. Therefore, the 4f-EDD is concluded to be measured and analyzed successfully.6.1.2. 4f population inversion and fully occupied 5d states at 430 K
The electron population at 298 K exhibited slightly occupied
Why are
Why does
6.1.3. Electron configuration at 340 and 535 K
In order to confirm the
6.2. XAO analysis of SmB6
SmB6 formally has five 4f electrons. In order to extend XAO analysis to multi 4f-electron system, EDD of SmB6 was measured at 100, 165, 230 and 298 K (Funahashi, et al., 2010). It is interesting to see how physical properties as a Kondo insulator are explained by the XAO analysis. The shadow in the difference density at 230 K in Fig. 14 specifies roughly the area of
The electron configuration in Table 3 is correlated to the physical properties of SmB6 as follows: (a) SmB6 is a Kondo insulator. Its electric resistivity increases gradually like semiconductors below room temperature and begins to increase steeply below 30 K with a decrease in temperature. It also begins to increase like metals above room temperature (Ueda & Onuki, 1998).
7. Bright future for X-ray crystallography
EDD investigation was limited up to 3
CeB6 is a possible quantum-material to emit UV light when electrons in 5d5/2Γ8 could be transferred to 4f5/2Γ8, as the investigation at 430 K revealed. The d-f transition is a permitted one by quantum mechanics. Since the 5d-occupation is found in the ground state of CeB6, some external force is necessary to make the transition occur. A electron populations in CeB6 and SmB6 found by the XAO analysis demostrate the importance of the EDD analysis based on quantum-mechanical orbitals.
As discussed in 5.3, the aspherical properties of EDD and AHV are separated better by the method based on classical Boltzmann statistics than the G-C method. However, recent development of neutron diffraction will make it possible to get intrinsic ADP's and use them as known parameters in X-ray EDD analyses. It will improve XAO analysis of rare-earth complexes and makes the XMO analysis surer and easier.
The accuracy of X-ray structure-factor measurements has been improved so much that every crystallographer will investigate EDD easily as a part of their X-ray structure analysis. The top-up operation with constant incident beam intensity at SR facilities has improved the accuracy of the structure factor measurements from 1 % to 0.1 %. Future of X-ray diffraction is bright.
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