Summary of information extraction methods for medical HSI.
\\n\\n
More than half of the publishers listed alongside IntechOpen (18 out of 30) are Social Science and Humanities publishers. IntechOpen is an exception to this as a leader in not only Open Access content but Open Access content across all scientific disciplines, including Physical Sciences, Engineering and Technology, Health Sciences, Life Science, and Social Sciences and Humanities.
\\n\\nOur breakdown of titles published demonstrates this with 47% PET, 31% HS, 18% LS, and 4% SSH books published.
\\n\\n“Even though ItechOpen has shown the potential of sci-tech books using an OA approach,” other publishers “have shown little interest in OA books.”
\\n\\nAdditionally, each book published by IntechOpen contains original content and research findings.
\\n\\nWe are honored to be among such prestigious publishers and we hope to continue to spearhead that growth in our quest to promote Open Access as a true pioneer in OA book publishing.
\\n\\n\\n\\n
\\n"}]',published:!0,mainMedia:null},components:[{type:"htmlEditorComponent",content:'
Simba Information has released its Open Access Book Publishing 2020 - 2024 report and has again identified IntechOpen as the world’s largest Open Access book publisher by title count.
\n\nSimba Information is a leading provider for market intelligence and forecasts in the media and publishing industry. The report, published every year, provides an overview and financial outlook for the global professional e-book publishing market.
\n\nIntechOpen, De Gruyter, and Frontiers are the largest OA book publishers by title count, with IntechOpen coming in at first place with 5,101 OA books published, a good 1,782 titles ahead of the nearest competitor.
\n\nSince the first Open Access Book Publishing report published in 2016, IntechOpen has held the top stop each year.
\n\n\n\nMore than half of the publishers listed alongside IntechOpen (18 out of 30) are Social Science and Humanities publishers. IntechOpen is an exception to this as a leader in not only Open Access content but Open Access content across all scientific disciplines, including Physical Sciences, Engineering and Technology, Health Sciences, Life Science, and Social Sciences and Humanities.
\n\nOur breakdown of titles published demonstrates this with 47% PET, 31% HS, 18% LS, and 4% SSH books published.
\n\n“Even though ItechOpen has shown the potential of sci-tech books using an OA approach,” other publishers “have shown little interest in OA books.”
\n\nAdditionally, each book published by IntechOpen contains original content and research findings.
\n\nWe are honored to be among such prestigious publishers and we hope to continue to spearhead that growth in our quest to promote Open Access as a true pioneer in OA book publishing.
\n\n\n\n
\n'}],latestNews:[{slug:"stanford-university-identifies-top-2-scientists-over-1-000-are-intechopen-authors-and-editors-20210122",title:"Stanford University Identifies Top 2% Scientists, Over 1,000 are IntechOpen Authors and Editors"},{slug:"intechopen-authors-included-in-the-highly-cited-researchers-list-for-2020-20210121",title:"IntechOpen Authors Included in the Highly Cited Researchers List for 2020"},{slug:"intechopen-maintains-position-as-the-world-s-largest-oa-book-publisher-20201218",title:"IntechOpen Maintains Position as the World’s Largest OA Book Publisher"},{slug:"all-intechopen-books-available-on-perlego-20201215",title:"All IntechOpen Books Available on Perlego"},{slug:"oiv-awards-recognizes-intechopen-s-editors-20201127",title:"OIV Awards Recognizes IntechOpen's Editors"},{slug:"intechopen-joins-crossref-s-initiative-for-open-abstracts-i4oa-to-boost-the-discovery-of-research-20201005",title:"IntechOpen joins Crossref's Initiative for Open Abstracts (I4OA) to Boost the Discovery of Research"},{slug:"intechopen-hits-milestone-5-000-open-access-books-published-20200908",title:"IntechOpen hits milestone: 5,000 Open Access books published!"},{slug:"intechopen-books-hosted-on-the-mathworks-book-program-20200819",title:"IntechOpen Books Hosted on the MathWorks Book Program"}]},book:{item:{type:"book",id:"3690",leadTitle:null,fullTitle:"Robotics and Automation in Construction",title:"Robotics and Automation in Construction",subtitle:null,reviewType:"peer-reviewed",abstract:"This book addresses several issues related to the introduction of automaton and robotics in the construction industry in a collection of 23 chapters. The chapters are grouped in 3 main sections according to the theme or the type of technology they treat. Section I is dedicated to describe and analyse the main research challenges of Robotics and Automation in Construction (RAC). The second section consists of 12 chapters and is dedicated to the technologies and new developments employed to automate processes in the construction industry. Among these we have examples of ICT technologies used for purposes such as construction visualisation systems, added value management systems, construction materials and elements tracking using multiple IDs devices. This section also deals with Sensorial Systems and software used in the construction to improve the performances of machines such as cranes, and in improving Human-Machine Interfaces (MMI). Authors adopted Mixed and Augmented Reality in the MMI to ease the construction operations. Section III is dedicated to describe case studies of RAC and comprises 8 chapters. Among the eight chapters the section presents a robotic excavator and a semi-automated façade cleaning system. The section also presents work dedicated to enhancing the force of the workers in construction through the use of Robotic-powered exoskeletons and body joint-adapted assistive units, which allow the handling of greater loads.",isbn:null,printIsbn:"978-953-7619-13-8",pdfIsbn:"978-953-51-5736-6",doi:"10.5772/86",price:139,priceEur:155,priceUsd:179,slug:"robotics_and_automation_in_construction",numberOfPages:414,isOpenForSubmission:!1,isInWos:1,hash:null,bookSignature:"Carlos Balaguer and Mohamed Abderrahim",publishedDate:"October 1st 2008",coverURL:"https://cdn.intechopen.com/books/images_new/3690.jpg",numberOfDownloads:138803,numberOfWosCitations:61,numberOfCrossrefCitations:48,numberOfDimensionsCitations:97,hasAltmetrics:1,numberOfTotalCitations:206,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:null,dateEndSecondStepPublish:null,dateEndThirdStepPublish:null,dateEndFourthStepPublish:null,dateEndFifthStepPublish:null,currentStepOfPublishingProcess:1,indexedIn:"1,2,3,4,5,6,7",editedByType:"Edited by",kuFlag:!1,editors:[{id:"81514",title:"Dr.",name:"Carlos",middleName:null,surname:"Balaguer",slug:"carlos-balaguer",fullName:"Carlos Balaguer",profilePictureURL:"https://mts.intechopen.com/storage/users/81514/images/system/81514.jpg",biography:"Carlos Balaguer received his Ph.D. in Automation from the Polytechnic University of Madrid (UPM), Spain in 1983. From 1983-1994 he was with the Department of Systems Engineering and Automation of the UPM as Associated Professor. Since 1996, he has been a Full Professor of the Robotics Lab at the University Carlos III of Madrid. He has been Director of the Department of Systems Engineering and Automation (2006-2007) and the vice-Rector for Research of the university in the period of 2007-2015.\nProf. Balaguer´s research has included, but not limited, humanoids robotics, robots' design and development, robot control, path & task planning, force-torque control, assistive and service robots, rehabilitation and medical robots, climbing robots, robotics and automation in construction, human-robot interaction.\nHe participates in numerous EU projects since 1989, like Eureka projects SAMCA, AMR y GEO; Esprit projects ROCCO and CEROS; Brite project FutureHome; IST project MATS; 6FP IP projects ManuBuild, I3CON, Tunconstruct; Strep project RobotCWE; 7FP project RoboSpect; and H2020 projects STAMS and BADGER (coordinator). He has published more than 200 papers in journals and conference proceedings, and several books in the field of robotics.\nHe is a member of IEEE and IFAC, and former President of IAARC (2001-2004). He participates in the European networks Euron and Clawar. Prof. Balaguer had been also an Associate Editor of IEEE Robotics & Automation magazine (2000-2005) and is member of the Editorial Board of Automation in Construction journal (Elsevier). He was the coordinator of the Spanish Robotic Network (2005-2009) and of the Madrid Community universities' consortium RoboCity2030 on Service Robots (2006-2018), and was the Spanish representative in the European platform EUROP (2006-2008). He is currently member of the euRobotics Board of Directors (2015 -). He is also Chairman of the Council for Science and Technology of the Community of Madrid (2016 -).\nHe received several awards, among them the best book Fundamentos de robotica edited by McGraw-Hill (1988), best paper of the ISARC'2003 in Eindhoven (The Netherlands), IMSERSO´s Award 2004 for assistive robots research, the Industrial Robot journal Innovation Award of the Clawar'2005 in London (UK), Tucker-Hasegawa Award 2006 in Tokyo (Japan) for a major contribution in the field of Robotics & Automation in Construction and FUE´s Award 2014 for AIRBUS-UC3M Joint R&D Center.\nHe was the General Chair of the IEEE-RAS Humanoids'2014 conference and is the General Chair of the IEEE/JRS IROS'2018 to be held in Madrid.",institutionString:null,position:null,outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"0",totalChapterViews:"0",totalEditedBooks:"1",institution:{name:"Carlos III University of Madrid",institutionURL:null,country:{name:"Spain"}}}],equalEditorOne:null,equalEditorTwo:null,equalEditorThree:null,coeditorOne:{id:"81512",title:"Dr.",name:"Mohamed",middleName:null,surname:"Abderrahim",slug:"mohamed-abderrahim",fullName:"Mohamed Abderrahim",profilePictureURL:"https://mts.intechopen.com/storage/users/81512/images/system/81512.jpg",biography:'Graduated in "Optics and Precision Mechanics" from Setif University, Algeria, and received the Ph.D. from the Mechanical Engineering Department of the University of Glasgow, Scotland, in 1996. 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He is currently the lead reseacher of the ASIROV and MEIGA-3 projects funded by the MICIN, and the HANDLE project funded by the EU within the 7th FP.\n\nFrom April 2003 to February 2008, he was a "Ramón y Cajal" fellow.\n\nHis general research interests include modelling, simulation and experimental validation of mechatronic systems with application to robotics, Man-Machine Interaction and Interfaces and subjects related to the Automation in the construction sector.\n\nOn the teaching level, he has been involved in teaching subjects such as Industrial Automation, CIM Laboratory, Programming and Computational Perception (computer vision).',institutionString:null,position:"Associate Professor",outsideEditionCount:0,totalCites:0,totalAuthoredChapters:"0",totalChapterViews:"0",totalEditedBooks:"0",institution:null},coeditorTwo:null,coeditorThree:null,coeditorFour:null,coeditorFive:null,topics:[{id:"1269",title:"Rapid Prototyping",slug:"rapid-prototyping"}],chapters:[{id:"5555",title:"Trends in Robotics and Automation in Construction",doi:"10.5772/5865",slug:"trends_in_robotics_and_automation_in_construction",totalDownloads:18069,totalCrossrefCites:14,totalDimensionsCites:33,signatures:"Carlos Balaguer and Mohamed Abderrahim",downloadPdfUrl:"/chapter/pdf-download/5555",previewPdfUrl:"/chapter/pdf-preview/5555",authors:[null],corrections:null},{id:"5556",title:"Construction Automation and Robotics",doi:"10.5772/5861",slug:"construction_automation_and_robotics",totalDownloads:9840,totalCrossrefCites:8,totalDimensionsCites:12,signatures:"Thomas Bock",downloadPdfUrl:"/chapter/pdf-download/5556",previewPdfUrl:"/chapter/pdf-preview/5556",authors:[null],corrections:null},{id:"5557",title:"Mechanising, Robotising and Automating Construction Processes",doi:"10.5772/5859",slug:"mechanising__robotising_and_automating_construction_processes",totalDownloads:5166,totalCrossrefCites:0,totalDimensionsCites:0,signatures:"Frans van Gassel and Ger Maas",downloadPdfUrl:"/chapter/pdf-download/5557",previewPdfUrl:"/chapter/pdf-preview/5557",authors:[null],corrections:null},{id:"5558",title:"Powerline Communication in Home-Building Automation Systems",doi:"10.5772/5860",slug:"powerline_communication_in_home-building_automation_systems",totalDownloads:17564,totalCrossrefCites:2,totalDimensionsCites:2,signatures:"Elena Mainardi and Marcello Bonfe",downloadPdfUrl:"/chapter/pdf-download/5558",previewPdfUrl:"/chapter/pdf-preview/5558",authors:[null],corrections:null},{id:"5559",title:"Towards n-D Construction Visualization: Cost Integration into 4D Models",doi:"10.5772/5857",slug:"towards_n-d_construction_visualization__cost_integration_into_4d_models",totalDownloads:3918,totalCrossrefCites:0,totalDimensionsCites:2,signatures:"Katherine A. 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\r\n\tGame theory is at the core of decision-making methods and technologies, its applications range from strategic studies, economics, management, finance to biology, anthropology, cognitive science, and even engineering. Large scale games using multiagent simulations have become a major part of the Social Sciences and the Life Sciences. On the other hand, computational game theory and multiagent technologies are deeply linked to artificial intelligence (AI) research, with applications to robotics and software agents. The Fourth Industrial Revolution is driving game theory to the center stage, in terms of the interaction between human agents and artificially intelligent agents, incorporated in different systems and devices. Machine learning applications to game theory, as well as multiagent simulations, are crucial for the success of human/AI and human/robot interactions as well as for robot and AI ethics research. The current book aims to provide the reader with the state-of-the-art game theory, dealing with both the established and the new frontiers, involving applications of game theory, the connection with AI and machine learning, multiagent simulation in large scale games and new directions in game theory, including experimental game theory and quantum game theory (now expanded by the possibility of cloud access to quantum computing resources).
",isbn:null,printIsbn:"979-953-307-X-X",pdfIsbn:null,doi:null,price:0,priceEur:0,priceUsd:0,slug:null,numberOfPages:0,isOpenForSubmission:!1,hash:"f07a9bd29c955daafd27203236672f72",bookSignature:"Prof. Carlos Pedro Gonçalves",publishedDate:null,coverURL:"https://cdn.intechopen.com/books/images_new/9228.jpg",keywords:"Cognitive Science, Reinforcement Learning, Deep Learning, Evolutionary Optimization, Nash Equilibria Learning, Multiagent Simulation, Computational Game Theory, Complex Systems Science, Social Simulation, Experimental Game Theory, Quantum Game Theory, Human/AI interaction",numberOfDownloads:null,numberOfWosCitations:0,numberOfCrossrefCitations:null,numberOfDimensionsCitations:null,numberOfTotalCitations:null,isAvailableForWebshopOrdering:!0,dateEndFirstStepPublish:"September 24th 2019",dateEndSecondStepPublish:"March 3rd 2020",dateEndThirdStepPublish:"May 2nd 2020",dateEndFourthStepPublish:"July 21st 2020",dateEndFifthStepPublish:"September 19th 2020",remainingDaysToSecondStep:"a year",secondStepPassed:!0,currentStepOfPublishingProcess:5,editedByType:null,kuFlag:!1,biosketch:null,coeditorOneBiosketch:null,coeditorTwoBiosketch:null,coeditorThreeBiosketch:null,coeditorFourBiosketch:null,coeditorFiveBiosketch:null,editors:[{id:"278948",title:"Prof.",name:"Carlos Pedro",middleName:null,surname:"Gonçalves",slug:"carlos-pedro-goncalves",fullName:"Carlos Pedro Gonçalves",profilePictureURL:"https://mts.intechopen.com/storage/users/278948/images/system/278948.jpg",biography:"Dr. Carlos Pedro Gonçalves is a University Professor and a researcher at the University of Lisbon. 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Although all these resources exist, the treatment planning is based on prior knowledge of the structures of the patient that can be obtained through any kind of medical images. Once the tumor has been diagnosed, appropriate treatment is indicated without, often, considering some factors that may influence treatment success, due the limitation of the medical images. Factors known as repair of sublethal DNA damage, cell repopulation, redistribution of cells, and reoxygenation are not considered [1].
Experimental data showed that oxygen is the most component that modified the radiation sensitivity and hypoxic cells that can be 2–3 times more resistant to ionizing radiation, which would imply administering doses higher than doses to achieve the same effect in oxygenated cells under normal conditions [2, 3, 4].
An important concept in clinical radiobiology is that the tumor may have subpopulations in hypoxic areas, thus leading to success of radiotherapy. Still, there are concepts related to acute or chronic hypoxic cells that may also alter treatment outcomes [5]. The low concentration of oxygen or hypoxia in the tumor tissues is a radiobiological phenomenon that has been observed since the beginning of the twentieth century [6].
The dependence of oxygen in tissue is related with the generation of free radicals, which came from interacting between the radiation energy and tissues. The quantity that measures the likelihood of this interacting is the cross section, which decreases when the beam energy increases [7]. Thus, few radicals will interact with the DNA of the tumor cell and consequently decreasing the chain reaction. This dependence is known as the oxygen effect that is ignored in the accuracy of ionization radiation treatments [8, 9], which is why hypoxia characterizes a tissue as radioresistant. Therefore, hypoxia and radiosensitivity are related to lower oxygen concentration rate; there will be higher survival cell rate, in postirradiation. On the other hand, there is an optimal oxygenation value wherewith the radiosensitivity increases [10]. Concentrations of oxygen in some tumors can be found in different regions in the same tumor complex. In this case, the tumor hypoxia may occur in a chronic or acute form. A form of oxygen concentration is due to the accelerated growth of the tumor in the most central parts, which are usually originated by the lack of adequate blood supply. In this way, in an axial section of one tumor, have concentric circles of regions of different oxygenation, whose central areas are necrotic [4]. One way to express the decreased radiosensibilty of cell, due to hypoxia, is through the parameter oxygen enhancement ratio (OER), which is defined as the amount of dose reduction required for cell of a given oxygenation level compared to cell with no oxygen to obtain the same effect [11].
One way to study the oxygen effect in tumors is through computational modeling. Thus, different modeling of oxygen effect has been proposed such as a voxel-based multiscale tumor response model [12]. The model used in this work was written in C++ simulating a virtual tumor with considering biological parameters as vascular fraction that is related to the oxygenation of the tumor.
Laura Antonovic and co-authors [13] used a treatment planning system TRiP [14] to simulated spherical tumors in silico based on a biological model of oxygen diffusion [15]. The beam used was carbon ion.
Another publication showed the use of a computational model for trans-vascular oxygen transport and blood vessel networks in tumors [16, 17].
The paper title Dose prescription and optimisation based on tumor hypoxia [18] proposed a method to prescribe dose distributions in radioresistant tumors.
The Monte Carlo HYP-RT model was used to simulate tumors considering the repopulation and reoxygenation for hypoxic head and neck tumors [19].
A 4D cellular model was applied to simulate head and neck cancer with oxygenation varying with vascularity and blood oxygenation [20].
An algorithm implemented on Geant4-DNA (codes based on Monte Carlo) was developed to show the effect of oxygen on DNA [21].
The Monte Carlo simulation, specifically the codes based on this method, can also be an effective dosimetric tool for the study of dose deposited. The dose–response from the codes shows an advantage of providing detailed studies in different conditions that involve procedures which are lengthy, complex, and expensive. The most commonly used Monte Carlo simulation codes in radiotherapy simulations are EGS, MCNP, and PENELOPE [22, 23, 24, 25, 26, 27, 28]. The quality of the results provided by the different codes is directly related to the accuracy of the implemented transport model and its data libraries associated with the cross section of the transported particles. Thus, the mixed charged particle transport algorithm, implemented by the penetration and energy loss of positron and electrons (PENELOPE) code [29], led to its intense use in radiotherapy [30, 31, 32, 33, 34, 35].
This chapter presents a study of dose distribution in simulated cranial tumor with different concentrations of oxygen [18, 36, 37, 38, 39] through the PENELOPE simulation code, which is based on the Monte Carlo method [40, 41]. The tumor with different concentrations of oxygen will be compared with one under normal oxygen conditions.
PENELOPE is a code used to simulate the transport of electrons, positrons, and photons considering interactions of photons and charged particles (such as the photoelectric effect, Rayleigh scattering, Compton scattering, production and annihilation of pairs, elastic and inelastic collisions), which are simulated in complex geometries and arbitrary materials.
In the PENELOPE package, there are subroutines written in FORTRAN distributed in various (open) source codes, applications, a database with characteristics of various materials, as well as application examples. The FORTRAN subroutines are organized into four basic files: PENELOPE.f, PENGEOM.f, PENVARED.f, and TIMER.f.
PENELOPE.f contains the simulated particle scattering and absorption subroutines, primary and secondary particle generation and storage, and particle transport management and simulation as a whole.
PENGEOM.f defines the structures, or geometries, to be simulated, which may consist of several homogeneous bodies, defined by a specified material and also by their limits in space. The bounding surfaces of the geometry bodies are described by quadratic functions. Through these functions surfaces such as planes, plane pairs, spheres, cylinders, cones, ellipsoids, parables, and hyperboloids can be defined.
For each body defined in the geometry file of a given simulation, a material index must be defined, corresponding to the material that will be a constituent of the body, having an agreement between the geometry file and the material file. In the material archive, the interaction data of the radiation with the material being used are shown in tables, as interaction coefficients for electrons and photons in energies from 1 eV to 1GeV. A material file is created using the subroutines of the MATERIAL.f and PENELOPE.f source codes. One of the advantages of PENELOPE is that it uses a recent database with the characteristics of various materials of interest in radiological physics [42] and current cross section libraries and other quantities required for particle transport [43].
The PENVARED.f source code contains subroutines that perform the variational reduction methods of the code, without increasing simulation time and neither the statistical uncertainty of the simulated results.
Finally, source code TIMER.f manages the simulation time.
The simulation algorithm is based on a model that combines numerical and analytical cross section data for the different types of interaction and is applied for initial energies from 1 keV to 1 GeV. Photons transport are simulated by the conventional or detailed, and for electron and positron are simulated using a mixed algorithm. Thus, for electrons and positrons, the PENELOPE code differs from other simulation codes by using a mixed algorithm that implements two simulation models: the detailed, for strong events, defined from angular deflection (scattering angle) or energy loss above a set value, and the condensate for weak interactions with angular deflection or energy loss less than the preset values. Condensed interactions are described by a multiple-scatter approximation consisting of transforming a given number of weak interactions into a single artificial event [44]. To develop a simulation with PENELOPE, the user must edit a FORTRAN file, user.f, with calls from the subroutines PENELOPE.f, PENGEOM.f, PENVARED.fe, and TIMER.f, providing overall simulation management and creating with these five FORTRAN files a user.exe file.
The simulation is started by running the user.exe file that reaches the user-supplied input information through the input.in file, geometry information through the geometry.geo file, and cross section information for the materials involved in the simulation through the material.mat file.
Another executable program comes together with PENELOPE package, the GEOVIEW.exe, which allows the visualization of the defined bodies and the materials that constitute a simulation geometry.
As some tumors have concentric circles of regions of low concentration of oxygenation, which are deprived of adequate blood supply, the evaluation of those regions becomes essential to guarantee the success of radiotherapy treatments [4]. The study evaluated the hypoxia effect in the dose distribution for simulated cranial tumor with different concentrations of oxygen [18, 36, 37, 38, 39] through the PENELOPE simulation code. The code allows the “construction” of tumors through the compound’s chemical composition, mass density, mean excitation energy, and energy and oscillator strength [45, 46]. The tumor with different concentrations of oxygen will be compared with one under normal oxygen conditions. The parameter OER was applied to express the decreased radiosensibilty of the tumor with hypoxia. The simulation of the dose distribution in tumors with hypoxia through PENELOPE code is based on the published by Alva-Sánchez [47].
The Monte Carlo code, PENELOPE®, version 2008 was used to achieve the main objective to simulate tumors with hypoxia. Since the code allows the “construction” of materials by the compound’s chemical composition, the soft tissue material from the code, number 262, was modified by adding different concentrations tumors with hypoxia, from knowledge that chemical compounds of the normal tissue are approximately equal to the tumor. The geometry of simulation used was a parallelepiped of 8 × 15 × 21 cm3 containing six identical spherical tumors of 1.2 cm radius, as shown in Figure 1 [47]. In that work 2 × 109 primary particles and 0.1mm2 pixel size and photon spectra at 6 MV [48], which was applied in the input file of the code, were used. The tumors were located before the buildup region for the 6 MV beam at 10 cm from the top of the phantom. The simulated material of the parallelepiped was a soft tissue, available in the code, while the tumors had different pressures of oxygen, from 5 to 70 mmHg. Simulation responses were obtained through the values average in the whole target or spherical tumors.
Geometric representation through of the PENELOPE code, for the simulation of six tumors (spheres) spaced within the parallelepiped, in the XY plane.
This geometry used to simulate the radiation conditions was 22 × 22 cm2 radiation field, 100 cm source-tumor distance, with a 6 MV energy beam. The obtained results from the simulation were analyzed in terms of deposited energy and values of OER relative to the pressure O2 in terms of mmHg, following the OER equation proposed for [55].
The second part of that work published [47] analyzed the oxygen effect in the dose distributions in simulated cranial tumors: one with different oxygen concentrations and the other with normal oxygenation [18, 36, 37, 38, 39]. A cylinder with 18 cm in diameter and 20 cm in height was simulated to represent the head of an adult, containing concentric spheres of radii of 0.5–1.2 cm that can represent the dimensions of a glioblastoma tumor. Due the characteristics of localization of this kind of tumor, the simulation tumors were centralized at 10 cm height, beyond the equilibrium range to charged particle for the energy used in this study. The bean incident was simulated in the direction to the phantom, parallel to the Z axis. In Figure 2 the geometry for radiation for a simulated tumor with different concentrations of oxygen from minor (radius sphere 0.5 cm) to greater is shown (radius sphere 1.2 cm).
Geometric representation of the PENELOPE code, for the simulation of a tumor (sphere) centralized in the center of the brain (cylinder), in the ZY plane.
The simulated material of the tumors and brain structures was soft tissue due to similar chemical compounds present. This material is available in the simulation code. In the spheres (tumors) these materials were modified with different concentrations of oxygen. The radiation conditions used were 1.2 × 1.2 cm radiation field, source-tumor distance of 100 cm, and photon spectra at 6 MV.
From the results obtained to the six spheres inserted in the parallelepiped (Figure 1), the deposited energy was plotted for each spherical tumor containing different pressures of oxygen as shown in Figure 3. Values of the OER were obtained through Eq. (1) and plotted for each pressure of oxygen, as shown in Figure 4.
Behavior and deposited energy for six identical spheres with different pressures of O2.
OER values relative to each of the six identical spheres with different pressures of O2.
The penmain file of the code generates an output file with generic information, such as number of simulated primary showers, secondary-particle generation probabilities, average deposited energies, and statistical error, etc. Each simulation was written in a separate file. The program computes and delivers the statistical uncertainties (3σ) of all evaluated quantities and distributions. Thus, for all obtained results, an error at least 3.58% was reported by the code used.
Figure 5a shows the dose distributions for a simulated tumor of 1.2 cm radius with different pressures of O2, and Figure 5b shows the same tumor of Figure 5a with normal oxygenation.
Dose distribution of the tumor of 7.24 cm3: (a) tumor 1, with different pressures O2, and (b) tumor 2, normal oxygenation.
These distributions were compared through a dose profile, as shown in Figure 6, along the center of the dose maps.
Dose relative profile of tumor 1 (with different pressures of O2) and tumor 2 (with normal oxygenation).
Statistical uncertainties at least 3.58% was reported by the code for all simulations. From the results shown in Figure 3, we can observe that the deposited energy have an approximately linear behavior with the increases in pressure until 50 mmHg of O2; from this pressure the deposited energy shows a constant trend for higher pressures than 60 mmHg of O2. This behavior was also equivalent to those presented in the literature [36, 49].
The obtained values of the OER relative to pressure of O2 shown in Figure 4 have a behavior similar to an increasing logarithm function as found in literature [50, 51, 52, 53, 54]. After the 60 mmHg of pressure of O2, the OER values have a trend to value constant. Figures 3 and 4 confirm the increasing of the deposited energy for tumors with a high concentration of oxygen, because of the oxygen effect that is disregarded in accuracy of the ionization radiation treatment [53, 55].
The dose distributions shown in Figure 5 visually show almost the same distribution, but in the field profile of both distributions, shown in Figure 6, a difference of 7.29% was found at a radial distance of 0.6 mm of the tumor. The code allowed evaluated the influences of effect of oxygen for tumors with hypoxia that is related with the outcome of treatment with radiotherapy. However, the hypoxic tumor cells are resistant to radiation [8]. From the comparisons of the dose distribution in the central plane of the phantom, it was observed that there are regions where the concentration of oxygen was lower (that of sphere of less radius), thus, the energy deposited was lower, unlike the spheres with higher oxygen concentrations.
Despite the fact that the code cannot simulate the physiological factor, which it can modulate a variety of normal developmental and metabolic processes that cause injury to the tumor cell, the present study of tumors with hypoxia plays an important role in dose distribution that can compromise the treatment outcomes and individual prognosis.
There are a number of simulation and numerical methods and codes that demonstrate the importance of the low concentration oxygen effect in response to ionizing radiation treatments. This chapter shows the work Study of the distribution of doses in tumors with hypoxia through the PENELOPE code which showed physical parameters with results similar to the literature through the PENELOPE-Monte Carlo code.
The authors thank professor Ph.D. Patricia Nicolucci for her orientation and suggestions for all the works, which are part of our doctorate work.
Hyperspectral imaging (HSI), also known as imaging spectroscopy, is a technology capable of sampling hundreds of narrow spectral bands across the electromagnetic spectrum through the use of an optical element that disperses the incoming radiation into certain wavelengths [1]. This technology combines the main features of two existing technologies: imaging and spectroscopy, making possible to exploit both the morphological features and the chemical composition of objects captured by a camera. The interaction between electromagnetic radiation and matter is distinctive for each material, therefore by using this technology it is possible to discriminate among different materials [2]. The characteristic spectral curve associated with a certain material is called spectral signature or spectral fingerprint, and through its analysis it is possible to differentiate among different materials or substances. The data structure used in HSI comprises both the spectral and spatial features from a given scene, and is referred to as hyperspectral (HS) cube. Figure 1 shows a graphical representation of an HS cube with an example of a spectral signature for the top-right pixel.
\nExample of a HS cube with an example of a spectral signature.
Although historically HSI has been applied to remote sensing [3], in recent years this technology has become a trending topic in different research fields such as food quality analysis [4, 5], military and security applications [6] or agriculture [7, 8], among many others [9]. HSI is also an emerging imaging modality in the medical field. It has been proven that the interaction between the electromagnetic radiation and matter carries useful information for diagnostic proposes [10]. As an alternative diagnostic tool, one of the strengths offered by HSI is being completely non-invasive and label-free. In medical research applications, this technology has been employed for more than twenty years in different areas such as the analysis of cancerous tissues in in-vivo and ex-vivo samples [11], digital and computational pathology [12], melanoma detection [13] or several gastroenterology diseases [14].
\nIn this chapter, a survey of the most common processing frameworks employed in the literature for information extraction in medical HSI will be presented. First, a brief introduction of the optical properties of biological tissues is provided. Second, the most common information extraction methods employed for HSI medical processing are described and discussed, including optical inverse modeling and machine learning methods. The last section summarizes the conclusions reached in this literature analysis.
\nThe interaction between light and biological tissues has been proven to be a useful tool to identify and classify several diseases. Absorption, refraction and scattering are the three different types of interaction that can be measured in biological tissues [15]. Light absorption measures the amount of light absorbed and transformed to energy by tissue molecules. Specific wavelengths of the spectrum will present absorption peaks related to the transitions between two energy levels in a molecule, which can provide tissue diagnostic information. Absorption is the inverse measurement of reflectance using HSI systems. The measurement of refraction and reflection of light is based on changes in speed and direction of the incident light into tissue. Particularly, hemoglobin (Hb) is the major component of the spectral signature between 450 and 600 nm of biological tissues, and spectral differences can be observed in the absorption/reflectance between oxygenated and deoxygenated Hb states [16]. A single absorbance peak is found at 560 nm in deoxygenated Hb, while two absorbance peaks are found at 540 and 580 nm in oxygenated Hb [17]. Figure 2 shows an example of these Hb signatures published in [18].
\nOxy-Hb (a) and deoxy-Hb (b) normalized absorption spectra, with Hb concentrations of 50 g/L and 68 g/L, respectively. The solid lines are experimentally measured, and the dotted black lines are the ideal. Oxy-Hb (c) and deoxy-Hb (d) measured and theoretical attenuation coefficients [18].
Regarding the measurement of light scattering, it is achieved when there is a spatial variation of the reflective index in the illuminated tissue. Scattering properties can be highly useful in diagnostic applications, since they provide different variations in tissue affected by a certain disease [19]. For example, the spectral range between 700 and 900 nm is related with the scattering dominant optical properties of collagen [20]. Also, the near-infrared spectral region is the scattering dominant region of fat, lipids, collagen, and water. Moreover, several tissues have fluorescence properties that can be revealed when such tissue is excited with certain wavelengths. As an example, ultraviolet light can be used to excite tissues, revealing the fluorescence emission of proteins and nucleic acids [21]. More details about biological tissue optical properties can be found in [19].
\nThere are two main types of medical HSI processing: optical inverse modeling and machine learning approaches. In this section, both methods will be presented in detail, showing their main characteristics, as well as their advantages and disadvantages.
\nIn optical inverse modeling techniques, a mathematical equation which models the interaction between the light and tissue is proposed, and the collected HS data is used to extract optical properties, such as the absorption or scattering of tissue. First, a physics-based model is proposed for the light propagation in tissues. Second, the HS data are used to extract optical properties from the proposed light propagation model. Although the number of studies which make use of this type of approach is limited, some researchers have used HS and light transport models in tissue to extract useful information for the detection of different diseases or conditions. Milanic et al. used Monte Carlo simulations of a light transport model in skin to extract information about the contents of melanin and blood saturation, with the goal of measuring cholesterol levels in human skin [22]. The same authors performed a similar processing analysis to skin HS data, but with the goal of detecting arthritis [23]. Claridge et al. demonstrated the utility of optical inverse modeling techniques for the estimation of the blood volume fraction of ex-vivo colon samples, showing statistically significant differences between the blood volume fraction of tumor and healthy conditions [24].
\nThe use of optical inverse modeling for information extraction in medical HSI presents some advantages and challenges. The main advantage is to count with an established physical-based model for correlating measured data, which are theoretically strong and contain tissue optical parameters that can be used for diagnostics. The main disadvantage of this approach is the possibility of bias in the model development and over-simplification of complex physical processes, which could result in suboptimal performance for information extraction.
\nMachine Learning (ML) methods are algorithms able to learn from data. ML algorithms enable solutions to difficult tasks which usually cannot be performed by a traditionally designed computer program [25]. There are different ML algorithms depending on the task they perform. In regression problems, a numerical variable is estimated from the data. In the context of medical HSI, Arimoto et al. used regression techniques to estimate the oxygen saturation map from human retina [26]. In classification problems, the objective is to assign a data sample to a fixed category. For example, Fabelo et al. used classification to identify normal tissue, tumor tissue, hypervascularized tissue and background in HS images from in-vivo human brain tissue [27]. The results of the classification of a medical HS image are usually represented as a classification map or heat map, where different colors are used for each class (Figure 3).
\nExample of classification and heat maps obtained through ML classification from (A) in-vivo brain tissue HS images [27] and (B) in-vitro H&E brain tissue HS images [28].
ML algorithms can be classified as supervised and unsupervised. In unsupervised algorithms, the goal is to cluster similar data samples in groups, extracting the information from data features. In supervised algorithms, the data is comprised of the data features and associated labels [29]. For example, in the example of Figure 3A, the data features consist of the spectra of each pixel of the HS image, and the labels are the different categories into which each pixel can be categorized, i.e. normal tissue, tumor tissue, hypervascularized tissue and background. The main goal of supervised algorithms is to use data and their labels to train a model which can be used to perform predictions about new data. ML techniques can be categorized as Feature Learning (FL) or Deep Learning (DL) methods. In FL approaches, the inputs of a supervised classifier are given by features extracted from the data. For example, in an image processing framework, such features may be related to shape, texture or color. On the contrary, DL approaches are devoted to use all the data as input to a supervised classifier, and the important features to perform the classification task are learned by the supervised classifier.
\nThere are challenges related with both types of ML approaches. On the one hand, in FL methods, the classification may be biased by which features are selected from the data for the classification, while the identification of features is performed automatically in a DL algorithm. On the other hand, DL methods usually require large amounts of data to succeed in the feature extraction and classification, while FL approaches may provide good performance with a limited dataset. Next, we provide a survey about the different ML approaches which are commonly used for HSI processing in medical applications.
\nIn this section, we describe the most common FL approaches which have been employed for processing medical HS data. This section is categorized in three main categories, namely pixel-wise classification, feature extraction and selection methods, and the usage of both the spatial and spectral information.
\nIn the HS literature, the concept of pixel-wise processing refers to the exclusive usage of the spectral information within an HS cube for extracting information from HS data. Recently, Ghamisi et al. performed a survey between the most commonly used classifiers in pixel-wise classification of HS images [30]. The most common classifiers used for the classification of HS images from a feature learning perspective are Support Vector Machines (SVMs), Random Forest (RF) and Multinomial Logistic Regression (MLR) based approaches.
\nSVM is a binary classification algorithm proposed by Vapnik [31]. The algorithm finds the optimal hyperplane that maximizes the margin between samples belonging to different classes. Although it was originally designed for linear classification, an SVM classifier can be used for nonlinear classification problems by using different kernels to map the data into a higher dimensional space. SVM has been shown to provide competitive classification performance on HS data even with a limited training sample size [32].
\nRF was firstly proposed by Breiman [33]. This algorithm consists of an ensemble of decision trees, where, in each decision tree, the training data are hierarchically partitioned into smaller homogeneous groups. In RF, different decision trees are generated from the training data, and the different classification results are combined by a voting process. The main advantage of RF is a reduced training time. RF has been successfully used for the classification of HS images [34].
\nFinally, MLR [35] approaches exploit the posterior class distributions of the training data for making predictions, and these methods have been successfully applied for the classification of HS images. The main advantages of MLR are fast computation for training and customizability, which allows modifications to the original algorithm to provide better generalization, e.g. sparsity constraints or multiple feature learning.
\nIn the context of medical HS classification, several authors have utilized the spectral information for the diagnosis of different diseases in a pixel-wise manner. The most commonly used pixel-wise classifier in medical HSI is SVM. In the context of surgical guidance, Akbari et al. processed HS images from the abdomen to detect intestinal ischemia [36]. For cancer detection, SVM and HSI have been used for the identification of gastric cancer [37], prostate cancer [38], tongue cancer [39], and skin cancer [40]. Although RF and MLR have been widely used for HS information extraction, their usage in medical HSI is limited. RF has been used for the detection of in-vivo oral cancer [41], while MLR has been considered for identification of ulcerative colitis in histological slides [42]. The main challenge in this field is to determine which pixel-wise classifier is more suitable for the classification of certain HS data. In this sense, some authors have performed comparisons of performance of different pixel-wise classifiers for the detection of brain cancer in histological slides [43], or the detection of the tumor margins in head and neck ex-vivo tissue [44]. Although SVM has been shown to outperform other classifiers, a deeper comparison between different classifiers should be urgently performed to definitively demonstrate which pixel-wise classifier performs better with HSI across multiple applications.
\nHS data are characterized by a high dimensionality. For this reason, instead of exploiting the complete spectral signature for image analysis, one trend in HSI processing is the use of Dimensionality Reduction (DR) methods. These methods are devoted to reduce dimensionality of the original data while preserving the most relevant information [45]. DR methods have been extensively used for HS image processing. There are two main types of DR approaches: feature extraction and feature selection methods.
\nOn the one hand, in feature extraction methods, a transformation is applied to the data to generate a new representation with lower dimensionality, but similar information content. The most studied DR algorithm for HSI is Principal Component Analysis (PCA). The goal of PCA [46] is searching for a linear transformation of the data by using orthogonal projections which minimize the covariance matrix of the original data. On the other hand, several data transformation approaches have been proposed for dimensionality reduction, such as wavelet transformations [47], different orthogonal projection approaches, or the exploitation of manifold embedding [48].
\nNevertheless, in feature extraction methods the data are transformed, and thus the physical information about specific wavelengths is lost, which means that the provided interaction between light and tissue cannot be analyzed, which may affect certain applications. For this reason, feature selection methods are devoted to find the most relevant features from the original data by keeping the most relevant information. In the context of HSI, feature selection methods are also known as band selection methods, which also seek to identify the most relevant spectral features for a certain application. There are several types of band selection methods. In this chapter, we only describe the most prominent methods used in medical HSI. In a large-dissimilarity criteria approach, the goal is to select the most dissimilar spectral bands. Conversely, in a low-correlation criterion, the spectral bands showing low correlation between each other are selected. An example of this kind of algorithm is Maximum Relevance Minimum Redundancy (mRMR). In search-based methods, the band selection is performed by solving an optimization problem driven by a given optimization function. These algorithms search for the best bands to solve such optimization problem. Some search-based methods used in HSI are Genetic Algorithm (GA) [49] or Particle Swarm Optimization (PSO) [50]. Further details about more sophisticated band selection techniques can be found in [51].
\nIn the context of medical HSI, feature extraction methods are used both as standalone methods and as a preprocessing stage before further data analysis. The former approach is to enhance the visualization of data, while the latter reduces the complexity of the data for being processed by other machine learning approaches. As an example of the direct application of PCA for tissue visualization enhancement, Zuzak et al. applied PCA to abdominal HS images in order to enhance the visualization of biliary trees using in-vivo samples [52]. Also, Wilson et al. demonstrated the ability of HSI for melanin detection in histological unstained specimens of melanocytic lesions in the skin and the eye using PCA and false-color representations of data [53]. PCA has been used for extracting the most important features of HS data prior to classification in different applications, such as the detection of in-vivo oral cancer [54], prostate cancer in histological slides [55], the identification of white blood cells in blood smear slides [56] or the intraoperative delineation of brain tumors [57]. Another example of the utility of feature extraction methods was demonstrated by Hadoux et al., where relevant differences between the retinal spectral data from patients with Alzheimer and healthy patients were found after applying an orthogonal projection of data [58]. Such differences in the spectral signature from different disease states were not possible using the raw spectral signature of tissue. Beyond PCA and orthogonal projection methods, Ravi et al. proposed a modification of the t-Distributed Stochastic Neighbor Embedding feature extraction algorithm, a non-linear dimensionality reduction technique, prior to the identification of tumor tissue within in-vivo brain samples [59]. Other feature extraction methods used in medical HSI prior to classification are the use of wavelet transformation for the detection of prostate cancer in mice models [60], or the use of Fourier Series coefficients for breast cancer detection [61].
\nThe use of band selection methods for medical HSI applications is not as extended as in other fields, such as remote sensing. However, some researchers have successfully exploited different band selection methods in HSI. Goto et al. used the Mahalanobis distance to determine the optimal wavelengths for gastric cancer, correctly identifying normal and tumor mucosa [62]. Additionally, mRMR has been used for the identification of the most relevant bands for ex-vivo breast cancer detection [61], and for in-vivo head and neck cancer [63]. Finally, Martinez-Vega et al. proposed a search-based method based on different optimization algorithms for the identification of the most relevant wavelengths for brain tumor detection within in-vivo HS images [64]. The optimization function was the pixel-wise classification performance metrics obtained by an SVM classifier. The results demonstrated that a GA optimization slightly improves tumor identification compared to the full-spectra counterpart.
\nBoth feature selection and feature extraction methods aim to reduce the dimensionality of HS data while retaining the most important information. Successful application of these techniques leads to reduced computational time, which is required in applications such as surgical guidance. Nevertheless, for biomedical HS applications, there are some relevant advantages of using band selection methods instead of feature extraction methods. The first advantage is that the information about the concrete wavelengths that are used is retained. This fact allows further analysis about the physical response of different tissues to specific wavelengths. The second advantage of band selection methods is the possibility of developing custom HS cameras which only captures the most relevant spectral channels for a given application. Such reduced-band cameras would be able to acquire HS video, which would be also convenient for some surgical guidance applications.
\nAlthough the aforementioned data processing methods rely on the spectral information, a HS cube is a 3D data structure containing both the spatial and the spectral information of a scene. In a recent review manuscript, He et al. provided a survey about different spatial-spectral techniques which have been used for the classification of HSI [65]. The inclusion of both spectral and spatial information is motivated by the limitations found in the spectral data. First, the high dimensionality of spectral data together with a limited dataset can lead to the curse of dimensionality. This phenomenon offers more detailed information about the captured scene, but it also contains redundant information and increases the computational time required to process the data [4]. Second, the high variability shown in the spectral data due to different lighting conditions, instrumentation noise, or other phenomena, makes the classification based only on the spectral information a challenge. In addition, high intra-class and low inter-class variability of the spectral signatures produces difficulties in the differentiation between classes. This problem is particularly challenging in biomedical data, where data originate from multiple patients. For these reasons, researchers within the HSI processing community have successfully improved the classification of pixel-wise approaches by the utilization of spatial and spectral features from HS images.
\nIn [65], the authors proposed a classification of spatial-spectral approaches in three main types, depending on how the spatial information is integrated in the processing framework. In pre-processing approaches, spatial and spectral features are extracted from the HS cube, and then such features are used for the classification. In integrated classification, both spatial and spectral features are used to train the classifier. Finally, in post-processing approaches, the spatial information is employed to refine the results of a pixel-wise processing of the HS cube.
\nIn the context of medical HSI processing, most of the spatial-spectral approaches have been focused in pre-processing and post-processing schemes. Some pre-processing approaches are the following. In leukemia detection in blood smear slides, Wang et al. evaluated the usage of three types of inputs for a supervised classifier: spatial features, spectral features, and spatial-spectral features. The results of this study suggest that the exploitation of both the spatial and the spectral features significantly improves the quality of the classification [66]. Similarly, Li et al. evaluated the feasibility of utilizing HSI for Red Blood Cell (RBC) counting. After conducting the RBC counting using uniquely spatial or spectral features of blood cells, the authors found an improvement in the under-counting and over-counting rates when they performed the image analysis using both types of features together [67]. Ortega et al. make use of the spatial information of the HS data by performing superpixel segmentation [68]. In post-processing approaches, Fabelo et al. proposed the incorporation of the spatial information to the SVM pixel-wise classification by using a K-nearest neighbors spatial filter which makes use of a one-dimensional representation of the HS cube extracted using PCA for the identification of in-vivo brain tumor [57].
\nDeep Learning is a family of machine learning algorithms that learn abstract features to best represent and make predictions about new data that is presented. More specifically, neural networks (NNs) consist of consecutive layers of neurons that have non-linear activations that connect the input data, extract features, and connect to logical outputs representing the classes of labels to provide prediction probabilities. Neural networks can have various dimensionalities, which largely depends on the size and dimensions of the input data. For example, utilizing only spectral signature information, a 1-D NN can extract features with fully-connected layers or 1-D convolutions. However, HS cameras acquire spatial information and spectral signatures simultaneously. Therefore, to exploit both sets of features, pseudo 3-D HS data can be input directly into a 2D-CNN and extract spatial features with learned convolutional kernels in the spatial domain, and these filters are connected across the entire spectral domain of the HS data. Lastly, 3D-CNN can utilize the full pseudo 3D HS data as input and extract spatial-spectral features with 3D convolutional kernels. There are numerous approaches, but these methods require more computational processing as more features and dimensions are involved.
\nThe most widely used approach is 2D-CNNs. Aggressive brain tumors, such as glioblastoma, often require surgical resection for treatment, and surgeons often implement multiple imaging modalities, including fluorescence, to aid in this very challenging task. In a pilot study to aid brain surgeons with label-free HSI, Fabelo et al. compared both 2D-CNN and 1D-DNN, considering spectral-only and spectral-spatial classification using DL [69]. In HSI digital histology, Ortega et al. detected glioblastoma brain cancer in digital slides using a patch-based 2D-CNN approach [70]. Additionally, Halicek et al. has employed very deep 2D-CNNs for classification, specifically the widely-used Inception v4 model (Figure 4) implemented in a sliding patch-based approach for head and neck squamous cancer [71] and thyroid and salivary gland cancers [72]. For comparing 2D-CNN and 3D-CNNs, in [73] Halicek et al. explored spatial-spectral convolutions in 3D CNNs with 3D convolutional kernels to 2D approaches. Although data were limited to only 12 patients, the preliminary results suggest 3D convolutions outperformed 2D convolutions for CNN design at the cost of computational power and speed.
\nSchematic diagram of the modified inception v4 CNN architecture. The CNN was customized to operate on the 25 × 25 × 91 patch-size selected. The receptive field size and number of convolutional filters is shown at bottom of each inception block. The convolutional kernel size used for convolutions is shown in italics inside each convolution box. Squeeze-and-excitation modules were added to the CNN to increase performance [72].
Another desired application of DL for HSI is semantic segmentation, which allows the entire scene to be classified altogether from spectral-spatial features in the entire scene. Semantic segmentation does not require image reconstruction like patch-based 2D-CNN approaches. The most commonly used method is the U-Net, as first used in HSI by Trajanovski et al. for tongue cancer detection with a 2D input data using all HS channels for semantic segmentation of ex-vivo specimens [74]. Additionally, Kho et al. used ex-vivo specimens from patients with breast cancer and applied a standard U-net with 2D input HS data using all spectral channels for semantic segmentation [75].
\nMore recently, several modern DL approaches with origins in computer-vision have been applied to medical HSI experimentally. In [76], a generative adversarial network (GAN) was applied to use DL to learn the association of RGB images and HS images to learn the ability to generate HS digital histology images from standard RGB digital histology images of breast cancer. Another modern approach is long-short-term-memory (LSTM) and recurrent neural networks (RNN) which can utilize spatial-spectral and time-based inputs to operate in real-time video approaches. In [77], RNNs are compared to and outperform 2D- and 3D-CNN methods for in-vivo cancer detection with the goal of real-time video endoscopy.
\nThe use of DL for HS processing is currently a hot topic in the research community in different fields. The main advantage of DL approaches in HSI is their capability to exploit jointly the spatial and the spectral information for image processing tasks. Currently, researchers are experimenting with different DL architectures in order to find the most appropriate DL model for HSI [78]. In the context of medical HSI, the use of DL in medical HS have shown good performance in different applications, but its usage is still limited compared to other ML approaches. The main reason is the limited number of data due to the novelty of the technology. More publicly available datasets with a large number of patients are required in order to definitively establish an adequate comparative of DL and traditional ML techniques.
\nIn this book chapter, we provide a survey about the most common processing frameworks for information extraction in medical HSI. First, we show the main motivations on the usage of HS technology for biomedical data: the interaction between the light and tissue provides useful information for diagnostic applications. Second, we survey the most common approaches for HSI processing in the medical field: inverse optical modeling and machine learning approaches.
\nWithin the ML approaches, we show there is a big variety in the methods which are used, mainly in two different types: traditional machine learning approaches based handcrafted features and recent DL techniques. Even within each subfield, the variety of options to extract information in medical HSI is still wide.
\nIn Table 1 we provide a summary of the applications of the different methods which have been described in this book chapter. Such table relates the main information extraction methods and the biomedical applications of HSI. Further literature revision about the different biomedical HSI applications are out of the scope of this chapter. However, we recommend readers who are interested in further information about the usage of HSI for different biomedical applications to refer the different literature reviews in this context mentioned in the introduction section.
\nInformation extraction method | \nAlgorithm | \nApplication | \nRef. | \n|
---|---|---|---|---|
Optical inverse modeling | \nLight transport models and Monte Carlo Simulations | \nCholesterol identification in skin | \n[22] | \n|
Arthritis identification in skin | \n[23] | \n|||
Blood volume fraction estimation in colon cancer samples | \n[24] | \n|||
Feature learning | \nPixel-wise classification | \nSVM | \nIntestinal ischemia identification | \n[36] | \n
Gastric cancer detection | \n[37] | \n|||
Prostate cancer | \n[38] | \n|||
Tongue cancer | \n[39] | \n|||
Skin cancer | \n[40] | \n|||
RF | \nIn-vivo oral cancer | \n[41] | \n||
MLR | \nUlcerative colitis in histological slides | \n[42] | \n||
SVM, RF | \nBrain cancer in histological slides | \n[43] | \n||
SVM, RF, LDA | \nHead and neck tumor | \n[44] | \n||
Feature extraction and feature selection | \nPCA | \nBiliary trees visualization enhancement | \n[52] | \n|
PCA and false color | \nMelanocytic lesions visualization | \n[53] | \n||
PCA and supervised classification | \nDetection of in-vivo oral cancer | \n[54] | \n||
Prostate cancer in histological slides | \n[55] | \n|||
The identification of white blood cells in blood smear slides | \n[56] | \n|||
Intraoperative brain tumor delineation | \n[57] | \n|||
Orthogonal projections | \nRetina analysis for Alzheimer’s detection | \n[58] | \n||
t-SNE and supervised classification | \nIn-vivo brain tumor detection | \n[59] | \n||
Wavelet transformation and supervised classification | \nProstate cancer in mice models | \n[60] | \n||
Fourier series and supervised classification | \nBreast cancer detection | \n[61] | \n||
Band selection with Mahalanobis distance | \nGastric cancer identification | \n[62] | \n||
Band selection with mRMR | \nEx-vivo breast cancer detection | \n[61] | \n||
In-vivo head and neck cancer | \n[63] | \n|||
Band selection with optimization techniques | \nIn-vivo brain tumor detection ‡ | \n[64] | \n||
Spatial-spectral classification | \nSpatial and spectral features in supervised classification | \nLeukemia detection in blood smear | \n[66] | \n|
Red blood cell counting | \n[67] | \n|||
Superpixel segmentation and supervised classification | \nBrain tumor detection in histological slides | \n[68] | \n||
Supervised classification and K-NN spatial filtering | \nIn-vivo brain tumor detection‡\n | \n[27] | \n||
Deep learning | \n2D-CNN and 1D-DNN | \nIn-vivo brain tumor detection‡\n | \n[69] | \n|
2D-CNN (Inception v4) | \nHead and neck cancer | \n[71] | \n||
Salivary gland cancer | \n[72] | \n|||
2D-CNN and 3D-CNN | \nHead and neck cancer | \n[73] | \n||
2D-CNN (U-Net) | \nTongue cancer detection | \n[74] | \n||
Breast cancer | \n[75] | \n|||
GAN | \nHS image generation from RGB | \n[76] | \n||
RNNs, 2D-CNN and 3D-CNN | \nHead and neck cancer detection | \n[77] | \n
Summary of information extraction methods for medical HSI.
Publicly available datasets are marked with ‡.
The main challenge in HS medical image processing is to determine which processing framework is the most appropriate for clinical applications. Nowadays, the current trend for researchers working with medical HS data is to collect their own data, and then propose a processing framework to address a certain problem. Normally such processing frameworks are customized for their particular applications. In order to reach an agreement by the research community on the most successful information extraction methods for HSI, there is the need of further investigations with comparisons among the most promising processing approaches. To this end, the availability of large public datasets would help. However, although there is no general processing framework, the different information extraction techniques together with HS medical data have demonstrated several advantages for biomedical applications.
\nThis research was supported in part by the Canary Islands Government through the ACIISI (Canarian Agency for Research, Innovation and the Information Society), ITHACA project under Grant Agreement ProID2017010164 and by the Spanish Government through PLATINO project (TEC2017-86722-C4-4-R). This research was supported in part by the Cancer Prevention and Research Institute of Texas (CPRIT) grant RP190588 and the U.S. National Institutes of Health (NIH) grants (R01CA156775, R01CA204254, R01HL140325, and R21CA231911). This work was completed while Samuel Ortega was beneficiary of a pre-doctoral grant given by the “Agencia Canaria de Investigacion, Innovacion y Sociedad de la Información (ACIISI)” of the “Conserjería de Economía, Industria, Comercio y Conocimiento” of the “Gobierno de Canarias,” which is part-financed by the European Social Fund (FSE) (POC 2014-2020, Eje 3 Tema Prioritario 74 (85%)).
\nThe authors declare that there are no conflicts of interest related to this chapter.
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