Open access peer-reviewed chapter

Systematic Identification of the Xylophilus Group in the Genus Bursaphelenchus

By Jianfeng Gu

Submitted: November 2nd 2017Reviewed: April 9th 2018Published: August 29th 2018

DOI: 10.5772/intechopen.77096

Downloaded: 542

Abstract

The pine wood nematode (PWN) Bursaphelenchus xylophilus (Steiner & Buhrer, 1934) Nickle, 1970 is the agent responsible for pine wilt disease (PWD). This nematode has been killing native pine trees (Pinus densiflora, P. thunbergii, P. luchuensis) in Japan since the early twentieth century. It is the number one forest pest in Japan and has been spread to China, Korea, Portugal, and Spain. The nematode is native to North America (Canada, USA, Mexico) and is thought to have been carried to Japan at the beginning of the twentieth century on timber exports. Up to now, the genus Bursaphelenchus Fuchs, 1937 comprises nearly 120 species (14 groups). Around 14 species very similar to B. xylophilus are put together and named the xylophilus group. This chapter presents the grouping history, subspecies or genetic types in species of the xylophilus group, and an identification key for 14 species of the xylophilus group, ITS-RFLP identification, and other molecular identification methods are also discussed.

Keywords

  • morphology
  • molecular
  • ITS-RFLP
  • DNA barcoding

1. Introduction

Pine wilt disease (PWD), which is caused by pine wood nematode (PWN), Bursaphelenchus xylophilus(Steiner & Buhrer [6]) Nickle [1], has been devastating Japanese pine forests since the beginning of the twentieth century. For many years, the mass mortality of pine trees was supposed by attacks of beetles. Until 1971, Bursaphelenchussp. was demonstrated as the causal agent of PWD by inoculation tests on Pinusspp. [2], and subsequently the nematode was described as Bursaphelenchus lignicolus[3]. After that, the PWN was first reported in the United States in 1979 [4]. Extensive surveys revealed the widespread distribution of the nematode throughout the country [5], but no epidemic was found, and the disease occurred only on a few exotic pine species. The PWN was later proven to be the same species as the one described in Florida in 1934 [6], the name was then changed from B. lignicolusto B. xylophilus[7], and it has been indigenous to North America [8].

Later, the disease has spread into China in 1982, Korea in 1988, Mexico in 1993, Portugal in 1999, and Spain in 2011 [9], and it is now still a potential threat to pine forests worldwide.

In nature, B. xylophilusis spread from tree to tree through the activity of adult stages of wood-inhabiting longhorn beetles of the genus Monochamus(Coleoptera: Cerambycidae) for short distance. This transmits the nematode either to the shoots of living trees during maturation feeding either by sex or by oviposition of females. But human activity is responsible for the long-distance spread. It is widely accepted that national and international trade of pine logs and related packaging wood is the causal of PWN spreading, so national and international regulations (e.g., ISPM 15: FAO, 2003, revised 2009) were accompanied by intensive sampling and laboratory investigations for the presence of PWD in imported wood worldwide in order to significantly reduce the risk of the pest’s spread. So, it is important to identify B. xylophilusto manage its further spreading and conduct early eradication plan.

Before 2000, there were only other two closely related species: B. fraudulentusRühm [10] and B. mucronatusMamiya and Enda [11] (B. kolymensisKorenchenko [12] was later considered as being synonymous with B. mucronatus). For a long time, in diagnostic protocol of B. xylophilus, it was morphologically compared with only B. mucronatusand B. fraudulentus, many PCR-based methods also used only these three species samples.

Since 2000, with further study of packaging wood and phoretic insects, more Bursaphelenchusspecies were discovered. Now, there are 110–120 known species in this genus [9] and 14 species in the xylophilusgroup. B. xylophilus(Steiner & Buhrer [6]) Nickle [1]; B. fraudulentusRühm [10] (J. B. Goodey, 1960); B. mucronatusMamiya and Enda [11]; B. conicaudatusKanzaki et al. [13]; B. baujardiWalia, Negi et al. [14]; B. luxuriosaeKanzaki and Futai [15]; B. douiBraasch et al. [16]; B. singaporensisZhang et al. [17]; B. macromucronatusGu et al. [18]; B. populiTomalak and Filipiak [19]; B. paraluxuriosaeGu et al. [20]; B. firmaeKanzaki et al. [21]; B. koreanusGu et al. [22]; and B. gillaniiSchönfeld et al. [23].

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2. Grouping history

Giblin and Kaya [24] first separated five groups within Bursaphelenchusmainly according to spicule morphology; the xylophilusgroup contains three species, namely, B. xylophilus, B. mucronatus, and B. fraudulentus, all have large, paired, arcuate spicules with a sharply pointed rostrum, and a disk-like expansion, cucullus, and females of this group have a vulval flap (Table 1). Braasch [25] studied the morphological relationship between European Bursaphelenchusspecies in order to provide key characters for their taxonomic identification. She considered the number of incisures in the lateral field as a basic grouping feature, together with other features like spicule shape, number and position of caudal papillae, presence and size of a vulval flap, and the shape of female tail. Among the 28 conifer-inhabiting European species, she proposed eight groups. The xylophilusgroup (B. xylophilus, B. mucronatus, and B. fraudulentus) can easily be separated from all other species by the presence of four incisures, the typical shape of spicules, the special position of the caudal papillae, and the large vulval flap of females.

Table 1.

Main morphological characters of the xylophilusgroup.

Ryss [26] considered that those characters like lateral lines, number and position of caudal papillae, and vulval flap are available for only some of the nominal species; thereby, their utility is limited. So, he studied 75 valid species of the genus Bursaphelenchusknown that time. Only based on spicule structure, he sorted this genus into six groups: hunti, aberrans, eidmanni, borealis, xylophilus, and piniperdaegroups. For the xylophilusgroup, its spicule is characterized by capitulum flattened anteriorly, small condylus, dorsal contour of the lamina distinctly angular in last third, and cucullus usually present (except in B. crenati). He listed ten species: B. xylophilus, B. abruptus, B. baujardi, B. conicaudatus, B. crenati, B. eroshenkii, B. fraudulentus, B. kolymensis, B. luxuriosae, and B. mucronatus. Later study showed that B. abruptus, B. crenati, and B. eroshenkiiwere definitely different from the xylophilusgroup [27]. B. crenatihas a different position of the caudal papillae (the double pair in front of the bursa is missing), the presence of a vulval flap is questionable, and the spicules do not show a cucullus. Additionally, it is transmitted by a bark beetle, a scenario not typical for the xylophilus group. B. eroshenkiihas five incisures in the lateral field, only five caudal papillae (seven in the xylophilusgroup) and no vulval flap [28]. The spicule shape of B. abruptusis not typical.

Braasch [29] stated that the xylophilusgroup of the genus Bursaphelenchuscan be clearly distinguished from other species of the genus by the presence of four lateral lines, the presence of a vulval flap in females, a characteristic shape of the male spicules, and the arrangement of the seven caudal papillae. An identification key of the nine species of the xylophilusgroup was presented, and B. kolymensiswas considered to be the European type of B. mucronatus.

Later, with the development of the molecular methods, especially sequencing technique, more Bursaphelenchussequences are available in the GenBank. Based on morphological characters and phylogenetic analysis [27], the genus is divided into eight groups with four incisures in the lateral field (xylophilus, okinawaensis, africanus, fungivorus, cocophilus, kevini, tokyoensisand sexdentatigroups), four groups with three incisures (eggersi, eremus, hofmanni, and leonigroups), and two groups with two incisures (abietinusand sinensisgroups). Most of the groups are well separated by both morphological and molecular studies.

3. Subspecies or genetic types in species of the xylophilusgroup

Bursaphelenchus mucronatusMamiya and Enda [11] was first found from pine trees in Japan. Braasch [30] reported for the first time B. mucronatusin timber imports from Siberia and in forest trees in Germany. These populations (later on named “European genotype” or “European type”) had shown morphological and morphometric deviations from Japanese B. mucronatusisolate. Separate species status for Japanese and European B. mucronatuswas postulated on the basis of sequence differences of an amplified fragment of the heat shock 70A gene [31]. However, successful mating experiments of a European B. mucronatuswith a Japanese isolate argued against this idea [32].

Braasch et al. [33] proposed the two Bursaphelenchus mucronatustypes to be subspecies. The European type is named B. mucronatus kolymensis, and the East Asian type is named B. mucronatus mucronatus. The earlier described Bursaphelenchus kolymensiscorresponds to B. mucronatus kolymensisin morphological characters. The two subspecies show morphological differences in the shape of female tail, length of mucro, position of excretory pore, and also small differences in spicule shape. They can be distinguished by their ITS-RFLP patterns based on restriction fragments obtained with enzymes RsaI and HaeIII. Based on sequence analysis of ribosomal ITS1/ITS2, LSU D2/D3, and mitochondrial COI regions, a clear subdivision of the two isolate groups (subspecies) has been confirmed.

Since the report of a mucronate (“M”) form of B. xylophilusdetected from balsam fir (Abies balsamea) in Minnesota and Wisconsin, USA [34], uncertainty in morphological distinction of B. xylophilusfrom related species became evident. For a long time, it is morphological and molecular characters are not clear. Gu et al. [35] made a morphological and molecular study based on five isolates of “M” form of Bursaphelenchus xylophilus, together with the round-tailed (“R”) form of B. xylophilusand B. mucronatus(both subspecies), and founded that the spicules of these species (types or forms) are similar. The “M” form of B. xylophilusis distinguished from the “R” form of B. xylophilusby a distinct mucro at the female tail end. It differs from the B. mucronatus kolymensisby slightly shorter female tail mucro and position of excretory pore. It is distinguished from B. mucronatus mucronatusby female tail shape and shorter female tail mucro. The conventional five restriction endonucleases (RsaI, HaeIII, MspI, HinfI, and AluI) used for obtaining ITS-RFLP patterns of Bursaphelenchusspecies cannot distinguish the “M” and “R” form of B. xylophilus, but the two forms can be differentiated by the use of two additional restriction endonucleases (Hpy188 I and HhaI). The molecular phylogenetic analysis based on the sequences of D2D3 LSU rDNA, ITS1/2 region, and mtCOI revealed that the “M” form of B. xylophilusis genetically closest to the “R” form of B. xylophilus, and that their sequence divergence is small.

4. Morphological characters of the xylophilusgroup

According to Braasch et al. [27], the xylophilusgroup is characterized by four lateral lines; seven caudal papillae; conspicuous P4, P3, and P4 papillae adjacent to each other (double pair) just anterior to bursa; spicules long, slender, and semicircular with angular lamina in posterior third; capitulum fattened with small condylus and distinct rostrum; cucullus present (for B. fraudulentusand B. paraluxuriosae, spicule cucullus is not clearly visible); and large vulval flap.

But lateral lines and caudal papillae are not easy to be seen sometimes, so typical male spicule shape and female vulval flap should be the main grouping characters [35]. In all known Bursaphelenchusspecies, only B. masseyi, B. trypophloei, and B. abruptusmay be confused with B. xylophilusgroup. All their females have a vulval flap, but their spicules are not typical. B. trypophloeiand B. masseyidiffer in having relatively short rostrum, and the angular contour of the dorsal lamina is usually indistinct. B. abruptusdiffers in different ventral curvatures of the spicules.

5. Morphological identification of B. xylophiluswith a key

Usually, R form of B. xylophilusis distinguished from other species by cylindrical female tail with bluntly rounded terminus, without mucro, or in some cases, some females will show a mucro, which is less than 2 μm.

But the mucro character of the R form of B. xylophilusis not always stable; it depends on different hosts and environmental situations. Braasch [36] reported that when an R form B. xylophilusisolate (US15) was re-extracted from trees 3 months after inoculation experiment, 35% of females were round-tailed, 8% had conical tails, and 17% had a distinct mucro (up to 4–5 μm), whereas 40% had a very small mucro of 1 μm length. Zheng et al. [37] reported that an R form B. xylophiluswas detected from a pine tree in Ningbo, China; all females had a distinct mucro, ranging from 0.5 to 2.9 μm (mean 1.7 μm), but the mucro disappeared after culturing on B. fuckeliana. Gu et al. [35] also reported an R form B. xylophilusisolate (4049); about half of the females detected from packaging wood had a round tail, and the other half showed a very small mucro about 0.5–1 μm long. But after culturing on B. fuckelianafor 1 month, more than half of females showed a mucro of about specimens, a mucro of less than 0.5 μm long, or no mucro. However, after being cultured on Pestalotiopsissp., apart from some round-tailed females, most females had a bluntly pointed tail terminus (Figure 1).

Figure 1.

Light photomicrographs of female tails of “R” form ofBursaphelenchus xylophilus(isolate 4049) in different situations: A–D, detected from the packaging wood; E–H, after culturing onB. fuckeliana; and I–L, after culturing onPestalotiopsissp. (scale bars = 10 μm).

Typical R form of B. xylophiluscan be distinguished from other species of the xylophilusgroup by the female tail shape. B. populisometimes also shows a cylindrical female tail without mucro, but they can be separated by the vulval flap ventrally bent with its distal half sunken in a conspicuous, sharp depression. Identification of the M form of B. xylophilusis more difficult. Females in mucronate populations generally show a mucro on the female tail end, on average 2.2–3.0 μm long (1.5–4.2 μm). Its mucro shape does not change even after culturing for many years. The M form of B. xylophilusis morphologically most similar to the B. mucronatus kolymensis. It is distinguished from it by slightly shorter mucro on female tail (mean 2.2–3.0 μm vs.3.0–5.0 μm) and the position of excretory pore. Up to now, M form of B. xylophilushas only been reported in North America, and its report in China and Taiwan is still questionable. Due to a certain variation in characters between populations and different hosts and environmental situations, it is essential to perform molecular test in case of doubt.

The following dichotomous key of species of the xylophilusgroup is based on the female tail shape (conical or cylindrical, with or without mucro, and mucro length), vulval flap shape (straight or bent), and spicule size and shape (with or without cucullus).

1.(a) Posterior to the vulvaB. populi
(b) Vulval flap bent and to the vulva not clear2
2.(a) Spicule cucullus not clearly expanded3
(b) Spicule cucullus expanded4
3.(a) Female tail cylindrical, c’ = 2.7–3.4, mucro presentB. fraudulentus
(b) Female tail conical, c’ = 4–5, without mucroB. paraluxuriosae
4.(a) Average c’ > 4, female tail conical5
(b) Average c’ < 4, female tail cylindrical, subcylindrical, or conical9
5.(a) Female tail without mucro6
(b) Female tail with mucro8
6.(a) Spicule length along the curved median line 27–30 μmB. luxuriosae
(b) Spicule length along the curved median line more than 35 μm7
7.(a) Spicule length along the curved median line 35–44 μm, condylus set off from dorsal spicule lineB. koreanus
(b) Spicule length along the curved median line 41–48 μm, condylus continuous with the dorsal spicule lineB. singaporeinsis
8.(a) Stylet with small knob, excretory pore ranging from median bulb to hemizonid, c’ = 3.6–5B. conicaudatus
(b) Stylet without small knob, excretory pore at the position of median bulb, c’ = 3–4B. baujardi
9.(a) Spicule length in chord 34~44 μm, the middle part nearly straightB. doui
(b) Spicule length in chord <34 μm, the middle part slightly ventrally curved10
10.(a) Female tail cylindrical, terminus broadly rounded, without mucro (some females may possess a short process at the tail terminus, usually less than 2 μmB. xylophilus(R form)
(b) Female tail cylindrical, subcylindrical, or conical, terminus with mucro, more than 2 μm11
11.(a) Mucro usually continuous with tail12
(b) Mucro usually offset from tail15
12.(a) Spicule condylus dorsally not offset, body slim (a > 40)B. mucronatus mucronatus
(b) Spicule condylus dorsally offset, body stout (a < 40)13
13.(a) Female mucro terminus pointed14
(b) Female mucro terminus bluntly pointedB. firmae
14.(a) Female tail straightB. macromucronatus
(b) Female tail slightly bent, dorsally stronger bent than ventrallyB. gillanii
15.(a) Mucro mean length more than 4 μmB. mucronatus kolymensis
(b) Mucro mean length less than 3 μmB. xylophilus(M form)

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6. Identification of the xylophilusgroup species with ITS-RFLP method

Application of ITS-RFLP analysis to Bursaphelenchusspecies identification was first described in 1998 [38, 39]. In this technique, a region of ribosomal DNA (rDNA), containing the internal transcribed spacer regions ITS1 and ITS2, is amplified by PCR method with forward primer F194 5’-CGTAACAAGGTAGCTGTAG-3′ (Ferris et al.) and reverse primer 5368 5’-TTTCACTCGCCGTTACTAAGG-3′ (Vrain) [40, 41], and, subsequently, the PCR products were digested with five restriction endonucleases AluI, HaeIII, HinfI, MspI, and RsaI to get the restriction fragment length polymorphisms. Using the same set of five restriction enzymes, species-specific ITS-RFLP reference patterns were compiled for 11 Bursaphelenchusspecies in 1999 [42] and extended to 26 species in 2005 [43]. The technique has proven to be a valuable tool in identification of nematodes isolated from imported wood in quarantine control or forest surveys [44, 45, 46, 47]. Wolfgang et al. (2009) produced ITS-RFLP reference profiles of 44 Bursaphelenchusspecies [48], including two intraspecific types in each of B. mucronatusand B. leoni. Though in the case of B. corneolus, B. lini(later identified as Devibursaphelenchus lini), B. singaporensis, B. sexdentati, and B. doui[49], additional bands in the patterns of certain isolates or individual nematodes were observed which may be explained by ITS sequence microheterogeneity, i.e., the presence of ITS sequence variants within the number of rDNA tandem repeats, but they did not seriously impair identification of species based on the overall reference patterns. ITS-RFLP analysis has proven valuable not only for differentiation of the pathogenic pine wood nematode, B. xylophilus, from related species but also useful in other Bursaphelenchusidentifications. In many recent descriptions of new Bursaphelenchusspecies, ITS-RFLP profiles have been used as additional species identification criteria.

The abovementioned traditional ITS-RFLP method cannot separate M and R form of B. xylophilus, but according to Gu et al. [33], the two forms can be differentiated by the use of two additional restriction endonucleases (Hpy188I and HhaI).

7. Other molecular identification methods

Besides RFLP method, many species-specific PCR and real-time PCR methods were developed for B. xylophilusidentification [50, 51, 52, 53, 54, 55, 56, 57, 58]. By real-time PCR [59] or loop-mediated isothermal amplification (LAMP) methods [60], B. xylophiluscan be detected directly from wood. But we should notice that those methods were developed years ago, now more species in the xylophilusgroup are known, and the results may be questionable. And when molecular tests are used for quarantine purposes to detect B. xylophilusin wood products, it is essential to recognize that both live and dead nematodes can be detected by these tests.

More recently, Ye et al. [60] developed a real-time PCR assay for PWN identification [61]. Based on DNA sequence analysis on the ribosomal DNA small subunit, large subunit D2/D3, internal transcribed spacer (ITS), and mitochondrial DNA cytochrome oxidase subunit one on the aphelenchid species, they developed a rapid and accurate PWN identification method targeting the ITS-1. A total of 97 nematode populations were used to evaluate the specificity and sensitivity of this assay, including 45 populations of B. xylophilus; 36 populations of 21 other species of Bursaphelenchuswhich belong to the abietinus, cocophilus, eggersi, fungivorus, hofmanni, kevini, leoni, sexdentati, and xylophilusgroups and one unassigned group from a total of 13 groups in the genus Bursaphelenchus; 15 populations of Aphelenchoides besseyi, A. fragariae, Aphelenchoidesspecies, and Aphelenchus avenae; and one population of mixed nematode species from a soil sample. This assay proved to be specific to B. xylophilusonly and was sensitive to a single nematode specimen regardless of the life stages present. This approach provides rapid species identification necessary to comply with the zero-tolerance export regulations.

Nucleic acid sequencing methods have undergone tremendous advances over the past decade. Now, many 18S, ITS, and 28S gene sequences have been determined for Bursaphelenchusspecies, and they are deposited in the GenBank database (http://www.ncbi.nlm.nih.gov/). In general, the comparison of those genes with reference data using sequence and phylogenetic analysis allows classification of nematode samples and establishing identification. Determinations of clades to which samples belong and the level of the interspecific variation are two approaches used together for molecular identification.

DNA sequencing method has been used widely in the last decade. But this method is not standard: different target genes and different primers are used, and sequences are analyzed with different methods in different labs.

DNA barcoding is a generic diagnostic method that uses a short standardized genetic marker in an organism’s DNA to aid species identification. An organism is identified by finding the closest matching reference record in a database containing large amounts of barcode sequence data. The first genetic marker to be described as a “barcode” was the mitochondrial cytochrome c oxidase I (COI) gene which is used for species identification in the animal kingdom [62]. According to Quarantine Barcoding Of Life (QBOL) project financed by the Seventh Framework Program of the European Union (www.q-bank.eu), first, a 1600 bp fragment of the small subunit (SSU) 18S rDNA gene can be PCR amplified and sequenced using primers 988F, 1912R, 1813F, and 2646R [63]. The obtained sequence data is used for identification to the genus and sometimes to species level. However, in some cases the SSU does not contain sufficient variation for identification to the species level, and additional sequences of the LSU (28S) rDNA or COI gene may be required to confirm the identification.

He and Gu [64] evaluated the applicability of 28S, 18S, and ITS loci as candidate DNA barcode markers for the xylophilusgroup of the genus Bursaphelenchus; they demonstrated that the average intraspecific divergences of 28S (not distinguishing two subspecies of B. mucronatus), 28S (distinguishing two subspecies of B. mucronatus), 18S, and ITS were 0.0071, 0.0030, 0.0007, and 0.0043, respectively, and, for interspecific divergences, were 0.0476, 0.0454, 0.0052, and 0.1556, respectively. The genetic distances between intraspecific and interspecific divergences of 28S and 18S loci showed some overlapping, but ITS loci had some degree of barcoding gap. The NJ trees from 28S and ITS loci with reliable bootstrap value could effectively separate 14 species of the B. xylophilusgroup into an independent branch. Furthermore, 28S locus could identify two subspecies of B. mucronatuswell. The NJ tree of 18S locus demonstrated that B. gillanii, B. firmae, and B. mucronatuswere mixed and difficult to be separated each other. In conclusion, 28S and ITS loci were suggested as candidate barcode genes for the B. xylophilusgroup due to their larger barcoding gap and higher species resolution.

When sequencing is more easy, quick, and cheap, and more sequences are available in the database, DNA barcoding will be the best way for species identification for genus Bursaphelenchus, even for other genera in the future.

8. Conclusion

After devastating a vast area of pine forests in Asian countries, the pine wilt disease was spread into European forests in 1999 and was causing a worldwide concern. To date, about 120 species of the genus Bursaphelenchushave been described, and 14 groups is suggested. About 14 species very similar to B. xylophilusare put together and named the xylophilusgroup. The xylophilusgroup is characterized by four lateral lines; seven caudal papillae; conspicuous P4, P3, and P4 papillae adjacent to each other (double pair) just anterior to bursa; spicules long, slender, and semicircular with angular lamina in posterior third; capitulum fattened with small condylus and distinct rostrum; cucullus present or not clearly visible; and large vulval flap. Subspecies (B. mucronatus kolymensisand B. mucronatus mucronatus) and two genetic types (“M” form and “R” form of B. xylophilus) exist in the group, and the mucro character of B. xylophilusis not always stable, which depends on different hosts and environmental situations, making identification complicated. Usually, R form of B. xylophilusis distinguished from other species by cylindrical female tail with bluntly rounded terminus, without mucro, or in some cases, some females will show a mucro, which is less than 2 μm. Due to a certain variation in characters between populations and different hosts and environmental situations, it is essential to perform molecular test in case of doubt. ITS-RFLP identification and other molecular identification methods are also discussed; DNA barcoding by using the 28S and ITS loci will be a reliable and convenient method in the future.

Acknowledgments

The research was supported by the State Key Research and Development Plan (2016YFC1202104), Ningbo Science and Technology Innovation Team (2015C110018), and General Administration of Quality Supervision, Inspection and Quarantine of the People’s Republic of China (AQSIQ) Science Program (2016IK168).

© 2018 The Author(s). Licensee IntechOpen. This chapter is distributed under the terms of the Creative Commons Attribution 3.0 License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Jianfeng Gu (August 29th 2018). Systematic Identification of the Xylophilus Group in the Genus Bursaphelenchus, Advances in Plant Pathology, Josphert Ngui Kimatu, IntechOpen, DOI: 10.5772/intechopen.77096. Available from:

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